TCONS_00070306-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070306-protein
Unique Name	TCONS_00070306-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	289

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070306-protein ID=TCONS_00070306-protein|Name=TCONS_00070306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MFKYLTLPLLLAVLLLPTSLVFVGRVSAQEDAVEDEVVAEEGEDSKVEAE
DEEPAAEETSPTGKDAEDEEEQVGGVRMTSDAVTSVLFPDYPEKDLPAGK
PLHLLVGLQNKGEKEFTIQTIDASFRYPQDYNYFIQNFTAISYNSVVEPG
SEATFRYSFFPHESYGGRPFGLTILMFFKDTDGNQYGAGVFNETVTLKEL
DENFDGETFFLYVLLVAVALLVVFGINYVVSNKFKRSSSKPKTETGTTND
KNDVDYDWLPKTTTDFKASPRRQSPRQRRVKRSTGSGEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043782	XLOC_043782	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070306	TCONS_00070306	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005595	TRAP_alpha

Vocabulary: **Cellular Component**
Term	Definition
GO:0005789	endoplasmic reticulum membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005595	Translocon-associated protein (TRAP), alpha subunit	PFAM	PF03896	TRAP_alpha	coord: 10..286 e-value: 4.1E-92 score: 308.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..289

Blast

[Close]

BLAST of TCONS_00070306-protein vs. Swiss-Prot (Human)
Match: SSRA (Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 5.704e-64
Identity = 124/281 (44.13%), Postives = 175/281 (62.28%), Query Frame = 0

Query:   15 LLPTSLVFVG----RVSAQEDAVEDEVVAEEGEDSKVEAEDEEPAAEETSPTGKDAEDEEEQVGG-VRMTSDAVTSVLFPDYPEKDLPAGKPLHLLVGLQNKGEKEFTIQTIDASFRYPQDYNYFIQNFTAISYNSVVEPGSEATFRYSFFPHESYGGRPFGLTILMFFKDTDGNQYGAGVFNETVTLKELDENFDGETFFLYVLLVAVALLVVFGINYVVSNKFKRSSSKPKTETGTTNDKNDVDYDWLPKTTTD--FKASPRRQSPRQRRVKRSTGSGE 288
            + P +++F G     ++  +D  EDE   E  EDS +E ED+E   EE  PT    + EEE V G    +  A T++LF     +D PA   +  LVG  NKG ++F ++++DASFRYPQDY ++IQNFTA+  N+VV P  +ATF YSF P E  GGRPFGL I + +KD +GN +   VFN+TVT+ E ++  DGET F+Y+ L  + LLV+ G++ ++ ++ KR     K E GT++ +NDVD  W+P+ T +   KASPRR  PR+R  KRS GS E
Sbjct:   14 VFPATVLFRGGPRGLLAVAQDLTEDE---ETVEDSIIEDEDDEAEVEEDEPTDLVEDKEEEDVSGEPEASPSADTTILF--VKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESR-KRKRPIQKVEMGTSS-QNDVDMSWIPQETLNQINKASPRR-LPRKRAQKRSVGSDE 286

The following BLAST results are available for this feature:

BLAST of TCONS_00070306-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070306-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SSRA	5.704e-64	44.13	Translocon-associated protein subunit alpha OS=Hom...	[more]

You are here

TCONS_00070306-protein (polypeptide) - C. hemisphaerica