TCONS_00070485-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070485-protein
Unique NameTCONS_00070485-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070485-protein ID=TCONS_00070485-protein|Name=TCONS_00070485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp
MVLYSLFEHAAGYAIFKVNATEEIGALLPEVQESVTDLERFGRLVKLVAF
SPFKNAANALENINSISEGMVHEDLKAFLEANIPTGKKKSKVALGISDAK
IGGVIQEACNIQCEYGQTVSEILRGVRLHFHKMIQGLTAETSGKAQLGLG
HSYSRAKVKFNVHRVDNMIIQTIALVDQLDKDINTFSMRIREWYSYHFPE
LVKIVNDNYLYAKLAQYIKSRKELTEEKLEGLEEIVMDEAKAKAIYVASK
SSMGMDISPIDLINIESFANRVIGLVEYRQKLHAYLTSKMNQVAPNLQAL
IGDLVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTKGKTPKYG
LIFHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFTESPSNLFGKKMHE
QVDDRLKFYETGEAPMKNEDAMMEVLEELKSLAEETTGLTNSEKKKKKKK
KKAKEEDDDENEEPAQENGHVETSEKKKKKKKRKAEEVEEEAEEADEQPK
KKKKNKDKSMVESDDINTTVDELVPKKKKKKKSKTENEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043883XLOC_043883Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070485TCONS_00070485Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012976NOSIC
IPR015943WD40/YVTN_repeat-like_dom
IPR002687Nop_dom
IPR012974NOP5_N
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 471..505
NoneNo IPR availableCOILSCoilCoilcoord: 439..463
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..539
IPR012976NOSICSMARTSM00931NOSIC_2coord: 168..220
e-value: 6.1E-29
score: 112.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 99..539
e-value: 6.3E-4
score: 17.8
IPR002687Nop domainPFAMPF01798Nopcoord: 175..407
e-value: 2.5E-87
score: 292.0
IPR002687Nop domainPROSITEPS51358NOPcoord: 293..411
score: 39.071
IPR002687Nop domainSUPERFAMILY89124Nop domaincoord: 161..410
IPR012974NOP5, N-terminalPFAMPF08156NOP5NTcoord: 4..69
e-value: 1.3E-22
score: 79.8

Blast
[Close]
BLAST of TCONS_00070485-protein vs. Swiss-Prot (Human)
Match: NOP56 (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 633.639 bits (1633), Expect = 0.000e+0
Identity = 298/437 (68.19%), Postives = 359/437 (82.15%), Query Frame = 0 
Query:    1 MVLYSLFEHAAGYAIFKVNATEEIGALLPEVQESVTDLERFGRLVKLVAFSPFKNAANALENINSISEGMVHEDLKAFLEANIPTGKKKSKVALGISDAKIGGVIQEACNIQCEYGQTVSEILRGVRLHFHKMIQGLTAETSGKAQLGLGHSYSRAKVKFNVHRVDNMIIQTIALVDQLDKDINTFSMRIREWYSYHFPELVKIVNDNYLYAKLAQYIKSRKELTEEKLEGLEEIVMDEAKAKAIYVASKSSMGMDISPIDLINIESFANRVIGLVEYRQKLHAYLTSKMNQVAPNLQALIGDLVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTKGKTPKYGLIFHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFTESPSNLFGKKMHEQVDDRLKFYETGEAPMKNEDAMMEVLEELKSLAEETT 437
            ++L+ LFEHA GYA+  +   EEI  L P+V+ESV +L +F  +V+LVAF PF ++  ALEN N++SEG+VHEDL+  LE ++P+  KK KV LG+ D KIG  IQE     C+ G  ++EILRGVRLHFH +++GLT  ++ KAQLGLGHSYSRAKVKFNV+RVDNMIIQ+I+L+DQLDKDINTFSMR+REWY YHFPELVKI+NDN  Y +LAQ+I +R+EL E+KLE LEE+ MD AKAKAI  AS+SSMGMDIS IDLINIESF++RV+ L EYRQ LH YL SKM+QVAP+L ALIG+ VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKT+G TPKYGLIFHS+FIGRA AKNKGRISRYLANKCSIASRIDCF+E P+++FG+K+ EQV++RL FYETGE P KN D M E + + +  A E T
Sbjct:    2 VLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASSQVALENANAVSEGVVHEDLRLLLETHLPS--KKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEIT 436
The following BLAST results are available for this feature:
BLAST of TCONS_00070485-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOP560.000e+068.19Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1... [more]
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