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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000114 ID=TCONS_00000114|Name=TCONS_00000114|organism=Clytia hemisphaerica|type=transcript|length=581bp
TGAACAACGGAAAATATTATATATTCTGGGCAATTGATAACCAATTACAA
AACGATGTTGAAGTACCAGGATGGGGGACTGTTTACACCGACATCCAAGT
TTTGGTTACCGCTAAAGGATCGAATGTAGTGTCTGGTAAAATGAAAGAAC
TTAAGTTCCAACCTTCAAAAGGAATTACTTATAACAGtggattgttacaa
gaaatcaTTCCAAAATGGGGAAAATCATGGCTCATAAAAGTCTCATTCAA
AGTTGTAAAGCAACCAATAGAGAAATGgaattgtatttttcatttcgtaA
AAGATGGAGGCTACTTTAACCGTCTACCGACAATGTACTTCAAATCTGAC
ACAAACGAAGTACAATTTGTACTTTGCCAAGACCCTACAAATCGTAATCT
TTGCCTAAATACCTTCCTACCGTCATTTGTTTTAAATACAAAATATGATT
TCGAAATCAAACATCAATTGGAAGGAAATGGATATTATATGTCTGTTTAC
ATCAATGGCGTACTAGAAAAACGTGACGTTACTTTTACCAACCCGGGAGT
TTACGAGAATGTTGAAGTGTATATTGGACCA Run BLAST on NCBI transcript from alignment at sc0000001:2150344..2156560+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000114 ID=TCONS_00000114|Name=TCONS_00000114|organism=Clytia hemisphaerica|type=transcript|length=6217bp|location=Sequence derived from alignment at sc0000001:2150344..2156560+ (Clytia hemisphaerica)
TGAACAACGGAAAATATTATATATTCTGGGCAATTGATAACCAATTACAA
AACGATGTTGAAGTACCAGGATGGGGGACTGTTTACACCGACATCCAAGT
TTTGGTTACCGCTAAAGGATCGAATGTAGTGTCTGGTAAAATGAAAGAAC
TTAAGTTCCAACCTTCAAAAGGTAAAAATAATTCtattacagtatgtggc
ccccaaaacggcgatcaaatttgaaatttctctcatatctagaggaaaag
agattttacaaaaatttttgctgcatgaaaacctttaacatNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNcaactgaaactgaaaatattaagcttt
aaagatatttttctcctatattttgcaaaaaaatgacagaatttgccgtt
tttgctgattcagcgaaaatttttatttttataatgttattttttgttat
aaactattaactcaaggtgataggaatagaattccaagattttttgcttt
ttctgatatttagaatttttggttttgtcaatgctgattcagggctccaa
aatactggttgaccttcaagatgctatatcttttacccagcctctaaagt
cacagatttacattttctgaacggcattaggtgtagaaagtttcctatac
cccttattttcaatatccaagggagctagagtgagttatatgcaattttt
atctaattttagttttaaaatatattctttagacgcaaatttgttatttt
gaatccgtctcaaaccagcaaaaacatgctcatttttaagtataaccatc
attctttcaaaataaaccaaaatcgtttaattctgataaatctacaagtc
agaatcttcatttgaatgaaaacctccgttttgggggccgtctccgtttt
gggggccatatactgtatgaAGAATCCTGATAGCNtctcgaaaaactata
tagaagacttttaaacgggtatagccgatttcattacctaactcgagata
attcacgcagaagatgctatttatggtcaattttgcccaaagtgtggcga
aaagtggaacttgcgcatgaaatatctcgagttaggtaatggAAATCAGC
gataaccgtttaaaagtcttctatatagtttttcgagtttcagctagatc
ttatttttttcctacaaacagcctgtatttttgtaacacgaccacactat
acAGTATGTGCCACTCtcctgaccatagtcggaaaaatagtcggaaaatt
gattttagtatttgaacataaaagttctattttagattctttaacacttt
taacaaagaacgTTATTAAAGAACGTTAATGACGTTacgaactttaaaaa
gacgttaataatatgttgcatcaccttcttttataaaaagtgctaagttt
taatgggtaattaacctttttgtttcgaagttttttcaaactgtcggcaa
agaattgaaccgttttaaatttttcggaaaatttttcaaaattaatgcat
caaaagttatgttatggttgtttttctataaaaaattgggatggaaaatt
ggtcaaaaagcacgattttcaagattttgaatcgaataagcttttaaaaa
aattttccgaaaaactaattttagttcgataaaataaactaagctcttca
aagttgaaatactcttctgaGCAagagtcttcattttcttctttatcaat
tttttttcattgcgattcttaaattttcagactcacagatggttggccta
acagaaaatgtataacatgtcaaatTTTCTCCGCTACATTAATACAAATT
AATACAATAtcttcagtacagcccgaaaaaaccggtcgttattgtatttg
ttaaccgtttccttaagcttcgattgatttttagcgctttatctaGGAAA
AATAgtgaaataaagcgaaaaaaaaaagcgaaaagagataaaaaattgtt
ataatttctgagtcagtaataacaagcaacatgctgaatgaacctaccta
atgattaacatcagttgaaaataagaaaaaagtgacaataattgtacaaa
aattcagaatggaaaaaaNNacgaaaatcacttaaaccattcagacccaa
aaaaccttttaagctgtttttggcccaaatttgcccaaaaaaaatttcct
taaaaatctggctccgtcacattgtgggcattgtcattttgcatcattgt
gcaaaaaatcagaaaaaaattatgagtcaacattgagaagctatattttc
ttatttggttaaaaggaatttccccaaaatacgaaaatccgtcttttaac
cctattcgtactagggggtggggggctctttctgttcggaggtcaaactc
ttgctaatagctcctgaaataatagagcttttgccgtgaaattttctgta
aattcctaacttttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCacaaaattgacacttttccaata
caaatttattttcattgtcaaatatatcgtttaaaccgtaatttattgaa
tatttagaataaaataagcattttaaacgcaggcaatttttttctaaagc
atTTGTTAGAacacaatagctatttataagaacaaaggaaattttcggtt
tttgctcactttaggcatgagtgacgtcatcaaaaaaaatttttgtcaaa
agttaccttgcgtcacaaggatcttgtgtgccaaatttcatccaaaaaga
cacactagatcaaaagttaaggggtggtacaggaaaagccccccccccta
gttctgaaccgcccctaaaagcctaagttgaatagggttaaggcgaataa
gaattttccaggaaaaaacacttaagccattctttaaagaatcttgccct
ccatctttgtacaaaatatcagaaaaaagtaatgacaggattttgcacaa
agtccaaaaaaccctatttttaggtagtttttggcccaaatttgcccaaa
tattatttttttcgaaaatcgggctccgtcacattttaggcattgccatt
ttgcatcattgtgcaaaaaatcagaaaaaaataatgattcaactttgaga
aaagctatattttcttatttggttaaagggagtttccccaaaatacgaaa
atccgttttttaaggcgaataagaattttccgggaaaaaccacttcagcc
attctttagagaatcttgccctccatcttNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatcagaaa
aaagtaatgacagaattttgcacaaagtccaaaaaaccctatttttaggt
agtttttggcccaaatttgcccaaataaattttttctcaaaactcgggct
ccgtcacgttctgggcattgccattttgcatcattgtgcaaaaaatcaga
aaaaactaatgagccaatcctgagaaaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaacgcattgttcattttcctttgaaaaagtgacgtca
caatgaattttcctaacgacgggcaactctggacagtgtaggcccgtcgt
catgcgaaatgaaacaatgaattgcgcaaaaagccgtgtagctcgcttcg
aaaaagtaaccggttaacaataggcaaaaatgcatattttgaatgtggca
aatattaaaaattcactatggtcagagcccttaagggtaccttttttgga
tttccaaagtcccgctaagggtcggaaaaatctgTAAGTAGCGTAGACAT
TTATGGAAGAGTGCTGGTTTTTAAAACACTGCAATACACAGGATGCGAAA
TTAAAGTCTGAAAataaatcacgcttttactcgaaatttttatgtgcttg
ttacatgacatttctgattggttcaaatttattgacactaataaagttat
cagctgtaagttgtaaagcaagtaacataaaatcacgtgaacgttttcga
gtaatcacatgttttgactaaACTGATATCAtgttgcaacccgtgtatta
gctattcataatataaaagaATTATTAGTGTGTCATAAAATCTGAATtcc
tcttgtctacgctactgactCCCCAAGATACTTGAAAACCTAAATCTAAA
GAACCGCAAGCCACGTGGGTCCGTTAAACTTACAACCTcgagttttttta
attcaaagggagaatcaaaatggtttgagaTAATTGGCcagcataaaatt
tctttgGTCCAGAGTAAAGCCTTCTATTGTATTTTTGTCTAACTATTTCT
CAAAGCGGAGATAtcccaatttgaaatttctaaaaatgggtTCCTTTACA
GTTCTTAGGTCAAAATTCTATTTGTTTTCTTACTAAAATTCAAAACTTGT
AACTTGGATTTTTGGaccccgattttcgaaaatagcaaaaatattttgag
attttaatgATGAAACTAGAAGGAATTCACacgccaaatatctcaaacca
tttAATAACCCTTTTAACTTTGAActtataaagcattaaaaactaTTTCT
TTTATAGGAATTACTTATAACAGtggattgttacaagaaatcaTTCCAAA
ATGGGGAAAATCATGGCTCATAAAAGTCTCATTCAAAGTTGTAAAGCAAC
CAATAGAGAAATGgaattgtatttttcatttcgtaAAAGATGGAGGCTAC
TTTAACCGTCTACCGACAATGTACTTCAAATCTGACACAAACGAAGTACA
ATTTGTACTTTGCCAAGACCCTACAAATCGTAATCTTTGCCTAAATACCT
TCCTACCGTCATTTGTTTTAAATACAAAATATGATTTCGAAATCAAACAT
CAATTGGAAGGAAATGGATATTATATGTCTGTTTACATCAATGGCGTACT
AGAAAAACGTGACGTTACTTTTACCAACCCGGGAGTTTACGAGAATGTTG
AAGTGTATATTGGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000114-exon-sc0000001-1491911889:2150344..2150514 | TCONS_00000114-exon-sc0000001-1491911889:2150344..2150514 | Clytia hemisphaerica | exon |
| TCONS_00000114-exon-sc0000001-1510915933:2150344..2150514 | TCONS_00000114-exon-sc0000001-1510915933:2150344..2150514 | Clytia hemisphaerica | exon |
| TCONS_00000114-exon-sc0000001-1575043694:2150344..2150514 | TCONS_00000114-exon-sc0000001-1575043694:2150344..2150514 | Clytia hemisphaerica | exon |
| TCONS_00000114-exon-sc0000001-1491911889:2156151..2156560 | TCONS_00000114-exon-sc0000001-1491911889:2156151..2156560 | Clytia hemisphaerica | exon |
| TCONS_00000114-exon-sc0000001-1510915933:2156151..2156560 | TCONS_00000114-exon-sc0000001-1510915933:2156151..2156560 | Clytia hemisphaerica | exon |
| TCONS_00000114-exon-sc0000001-1575043694:2156151..2156560 | TCONS_00000114-exon-sc0000001-1575043694:2156151..2156560 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2150344..2156560 + |
Blast
The following BLAST results are available for this feature:
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