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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003348 ID=TCONS_00003348|Name=TCONS_00003348|organism=Clytia hemisphaerica|type=transcript|length=4398bpRun BLAST on NCBI protein sequence of TCONS_00003348-protein >TCONS_00003348-protein ID=TCONS_00003348-protein|Name=TCONS_00003348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=859bp MEVEVGIKNSIWNDGISKFIKTPEPFPVHNHLIDTKIYAAIGENELLHTRRun BLAST on NCBI transcript from alignment at sc0000026:589494..635258- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003348 ID=TCONS_00003348|Name=TCONS_00003348|organism=Clytia hemisphaerica|type=transcript|length=45765bp|location=Sequence derived from alignment at sc0000026:589494..635258- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:589494..635258- >TCONS_00003348 ID=TCONS_00003348|Name=TCONS_00003348|organism=Clytia hemisphaerica|type=CDS|length=56760bp|location=Sequence derived from alignment at sc0000026:589494..635258- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00003348 vs. Swiss-Prot (Human)
Match: PCDP1 (Cilia- and flagella-associated protein 221 OS=Homo sapiens GN=CFAP221 PE=1 SV=2) HSP 1 Score: 374.785 bits (961), Expect = 3.145e-111 Identity = 250/782 (31.97%), Postives = 408/782 (52.17%), Query Frame = 2
Query: 188 VHNHLIDTKIYAAIGENELLHTRPSSIHFRGFQVGKKYTQKLRIVNASSECQRMLIVPPSSSNFQIQYQKKDS-LVPGMYLEVDVIFTPKTNEYQQDAIRIHSQTSSNLIVPIHAYLQINISSTFPSKINFRPTVVGQKSQKKIPLNNPTSVDFDFHVSFAEKHTSFVVEPSSGVIPANGHVLITLTYNPTEYCTSCAKLQVIVAQFNNQPHFCSLMGSSVPGLASKKKLEVLPEQVSEKILDPRTISPLERTRAKKKVADNTFK--SAKTTSQKT--IVKDGIQFSTNLNNTNAVNHVLMQKAGQMKAKELREVIRRKTEDDIEKEGGSHQMKEAVFEHLVGRNIAEEQRNQLRWCVRIGERDLEESTQSRVFNSRQQAEQEFQVFRRDGNLEAECNRSTTQTLTNQRIIRSANQH-ADATPTFDLYLNNEWDRRHRVLTKFIQATRKVIIRNRAKNNIQQL-TLHLDSWRR--GNFQSAISQKPKYDTNKELEIVEDVNT---VFNQENIKSFSFPEYQDPDKKTDMAIDALGSFDMSSTSVKVKRRIETYKLKVPQQYKTLSYSKHHLTNSVRKYIPKSFARTLRVGAESEIIQSDHGTTLNAPLTADRTTLDDIEPQSVTVKFSVPTKFLEPNVYHPLHIFNPLPGVQGHAQKMLYSEVDDDHKLC--PLVPRMTSNSNGE-------------DVVPGVMDWKKFPSQALMSISLPTLANCYLPRWSDPFGEDLCSSQTPSLMTSLPPDDVMDIDEHDEEYEEARIVPTLDMIRHEF 2452
V NHL+++K+YA + N+++ RP IHF G+QV K++ Q L +VN S+E R+ I+PP + F+I Y +K+ LVPG+ L V V F+P Y D IR+H + L+VPIHAY +N S FPS IN ++G+ IPL VDF+F+++ + H +F +EP+SG+IPANG + +T+ + P +Y T+ K+Q+ ++QFN+QP+ C G+ P +A LP + E++ T+S +K + F AK QK I ++F +L+N AV VL Q+ G++K KELREV+ + TE I K + QMKEA+FE V ++I EE N L+W V +G+ + + + Q+A ++++ R D L+ E R T+ ++++R++R+ + + PTFD +NN W R R +F Q RKV+I+ R N + + + +S R G + +I+Q+ + I +D T + + + F+FP+ P ++A D LG + S+ V++K+ + L+VPQ YK Y + S Y P+ AR L+ GAE E+ TT+ A D TT + ++ + P Y PL++FNP PG+ + Y+E D+ LC P + +G D++PG+M WK F Q+L+ SLP + + D F + P+++ +LP +D ++ E + + ++ T +MI+ EF
Sbjct: 39 VPNHLLESKVYAKLVNNKVIQARPGIIHFGGYQVEKQHQQILHLVNVSNEDTRVHILPPQTKYFEINYVRKEHHLVPGLSLTVTVTFSPDEWRYYYDCIRVHCKGDDTLLVPIHAYPVMN-SLDFPSFINLSNVLLGESKTYVIPLQCSCPVDFEFYITLIQSHQAFAIEPTSGIIPANGKMTVTIKFTPFQYGTAQIKMQLWISQFNSQPYECVFTGTCYPNMA-------LPLEEFERL---NTLSKKVNVPPEKAMMHINFHRPPAKPKPQKVKEIEYQNLRFPVDLSNPFAVATVLNQEPGKLKIKELREVLDQGTE--ISK---TRQMKEALFEQKVRQDIHEEMENHLKWQVHLGKDPMSFKLKKELTEEWQKACAKYKLDRGDPILDEEFQRLKTE-VSHKRVVRNQEEKIKEFHPTFDPLINNTWLSRSRAQKRFQQVARKVMIQGRLFNMLSAVREMDKESILRKIGQAKQSIAQEANFFKFFLRRISQDDYTSRFSVSPKEVLPFAFPDCSPPQDSNELAPDGLGLVPIKSSEVQIKQSYSFFNLQVPQLYKIKRYQPFSVHKSSTSYRPQKLARALKQGAEDEV------TTITALPKQDSTT--QLSGKTSVLSMKPPEALAMSLDYDPLYVFNPNPGLFAVMHPLTYAETLIDYHLCSHPKYKFTKESRHGSSIPVTQKQFLHHTDIIPGIMHWKSF--QSLVLSSLPDPSKMETTKSCDSFNSFMLPIDVPAILDALPEEDRLETVERELCEQNVEVMLTPEMIKVEF 793 The following BLAST results are available for this feature:
BLAST of TCONS_00003348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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