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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003350 ID=TCONS_00003350|Name=TCONS_00003350|organism=Clytia hemisphaerica|type=transcript|length=2585bpRun BLAST on NCBI protein sequence of TCONS_00003350-protein >TCONS_00003350-protein ID=TCONS_00003350-protein|Name=TCONS_00003350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp MKFMSTSAQHLRMEQRVVEAGRHQLKYFDKLKKEFNLIRSLYLACHGRVQRun BLAST on NCBI transcript from alignment at sc0000026:638006..680271- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003350 ID=TCONS_00003350|Name=TCONS_00003350|organism=Clytia hemisphaerica|type=transcript|length=42266bp|location=Sequence derived from alignment at sc0000026:638006..680271- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000026:638006..680271- >TCONS_00003350 ID=TCONS_00003350|Name=TCONS_00003350|organism=Clytia hemisphaerica|type=CDS|length=11448bp|location=Sequence derived from alignment at sc0000026:638006..680271- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003350 vs. Swiss-Prot (Human)
Match: SHPRH (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2) HSP 1 Score: 296.204 bits (757), Expect = 8.071e-84 Identity = 185/499 (37.07%), Postives = 265/499 (53.11%), Query Frame = 2
Query: 20 VLDGLFELVKQPSKEVIQGTAECCLRPAAGIKAPI--CVFCSLNKEIDYYELCLHANSRXXXXXXXXXXXXXFRGE---------------TQLDVFMKFMSTSAQHLRMEQRVVEAGRHQLKYFDKLKKEFNLIRSLYLACHGRVQAIDELEMCISRLRFPTHYEEMTEGFCEARNDIVRLGEVSQTRYALLSDRVTASEELKLKNGQMAYLQNLAKVQEDNNGS-NPEPCPICVFPLGSEWAVMTCGHSVCCKCMTTL--QKRSNYKRAAIQCPMCRAQSKLTAISIVTAKPAAVKSTDTDRASSDSNDDILDANISVQGNFSTKIEAVVRRILWIQIEQPKAKTLVFSTWTNVLKVISQALSVNNVEFKSLAGAHPKQFERFLTFFKENEICNVLLLPLHSGAKGLNIIEASHLILTEPALNPSDELQAVGRVHRIGQDKETYVHRFFVRDTVEEKMYHLFKPKSTQGENTLENE-----LTVDDVVNLIQKTQDE 1441
V + + L PS+ VI+ C LRPA + P+ CVFC ++ YE L +N+ + T E G ++ + MK + + A+ R + V+ G + F+ KKE+ L+ ++A RV A+DEL M RLR E I+ EV Q R LL+D+ A+ +L+ K GQ+ YL NL K Q+ +G NPEPCPIC LG +WAV+TCGH C +C++ + Q R++I+C +CR + IS V A + D I V+G+ STK+EAVVR ++ IQ+ P AK LVFSTW +VL +IS+AL+ NN+EF ++ K F+ L+ FK + N+LLLPLH+G+ GL IIEA+H++L EP LNP+ ELQA+GRVHRIGQ K T VHRF ++ T+EE+M + K N+ LTV D+ +L K +E
Sbjct: 1207 VREAVKNLEGPPSRNVIESATVCHLRPA---RLPLNCCVFCKADELFTEYESKLFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPN---PPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKANQEED----------------IPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRV--KTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTVADLADLFTKETEE 1681 The following BLAST results are available for this feature:
BLAST of TCONS_00003350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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