TCONS_00003551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003551
Unique NameTCONS_00003551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003551 ID=TCONS_00003551|Name=TCONS_00003551|organism=Clytia hemisphaerica|type=transcript|length=1395bp
AGGACCACCACGTGACGGCTACTCCACATGTACACCACCCACAGCCACAA
GCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCGTTAACCAACAACA
AGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCCCATCACCAACATG
CGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAATCAACCACAACAG
ACACAACCACATTATATTACAAGACCGGTATATCGAACGCAATCATATCC
TTCCGCTGGCACGCCAATCGAGATGCAAAACAATTCACCCATATTGAGTA
ACCCAACATCGGTGTATCCGAGTGCAGCAGCGGGTTATGTACAGAATCAA
CCGCAGATGTTTGTACTGAACACGCAACAGTACCAGCAGCAGGTTCGTCT
TAAGATGATGCAAGGTCAACAAGGACAACCTTATATGACGGCGCCTCACC
CTTCCGCCATCCGTTTCATCAATCCAGCACAGCGCATGCCCAATACCGCC
AATTTCCACCCACAAGATAACAATGCGACCATCGCATCAAGTTATATATT
ACAAGCGACACCTCATTCTGTGGCCACACCCCACCAAACGATGGCGGCTT
CCTACCAACAACATCAAACGCCCTCTTCTCCCGCCACAGGGGGCGCCGGT
TCAGTGGTGGTCTCACAACATTACGTACCGTCCCACCATCAGCAATACGT
TATGAATAACCAAAATACAAATTATCAACATGTTGCGCACTCAATGCATT
CACAAGGGAACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCAA
CGACCATCAGTATACACAGCGGGTGGACAACCTCATCATCAGCAACAACA
CCAACAACCGNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCGG
GTGGACAACCTCATCATCAACAACAACACCAACAACCGTTCGTCGTTATA
CCACAACCCTTTCATCACCCAGGCCAAGGAGGGTTGATTCAGCCGAACTT
TCAACAGGGAAATTAGAAAAGTGAACAcataaaaaacatagaaaatggTT
CAATGGTATGCTTACGTGGGGATGTTCAAGCGTTCAGTTTTTGCAAATga
agaaaacacaaaaaaatagaaagcaAATTCACGTCGGGGAAATGCTCCGA
ATCAAGGTTGAGAGAAGAAAAAAGAGACGAGATTACTAGTCTATGATTAC
AGATAGAATTGATAGATATTTTCTCTTCGGGAAACGATACAAACTTTGTA
TTTTAtacgaaaaatatttagcaaAGAATAAGATTTTATGCATCCAGGAT
GTGACAATGCCAAAGCAAtgtcttttcaaaaattggataaaaagatattt
tgatgagataataaaaagaaagaattcagaaatgaaataaaatta
Run BLAST on NCBI

transcript from alignment at sc0000030:242142..247226+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003551 ID=TCONS_00003551|Name=TCONS_00003551|organism=Clytia hemisphaerica|type=transcript|length=5085bp|location=Sequence derived from alignment at sc0000030:242142..247226+ (Clytia hemisphaerica)
AGGACCACCACGTGACGGCTACTCCACATGTACACCACCCACAGCCACAA
GCGTCGCATCAATACATTGCAGCAACGCCCGGCGGCGTTAACCAACAACA
AGTTGTGATTGCCGCCCACCATCAACAAGCAGCCGCCCATCACCAACATG
CGCCGCAAGTGGGTCCACAGGAAGTTATTCAGCCTAATCAACCACAACAG
ACACAACCACATTATATTACAAGACCGGTATATCGAACGCAATCATGTAA
gaatttctgttttgttttgttttaaacttttttttgttactACAGGTGGT
AAACTTTAAAACTTATTAAGGATATAATGATCTCAAAAATGTGAAACAGT
GTTAATAGATgcttgaatttcaaagaaataaacaaaCACTCTTCATTCGG
ACTATGTTTCGCGAGATTTAATTTCGAAAACAAATCTCGCGAAATTGCAC
GAGATCACTGACAATGCTATTTTTAACGTTTCATGGGTCACTTTATGCAA
AATTTTGGTTGACGCAAAAATTTGTCTAATTAAAGTATCTTTGATCTAAT
AAAAGTTCGAGTTCACGGAGAGTTTTTAGTTCGACGGGAATTAGATGGAT
CGAACAAAGTTTGATGAATGAGTATATATAGACTCAatacattcaatatt
tttcctttttctaaaCAGATCCTTCCGCTGGCACGCCAATCGAGATGCAA
AACAATTCACCCATATTGAGTAACCCAACATCGGTGTATCCGAGTGCAGC
AGCGGGTTATGTACAGAATCAACCGCAGATGTTTGTACTGAACACGCAAC
AGTACCAGCAGCAGGTTCGTCTTAAGGTAGACTACACATAACTTTTTGAT
TAATGATTAATAGGATAAGATTCCTTGGATTTCTTGAAATCAAGTCCCGA
TGGAGATTTGAAATGATTTTATCAAGAATTCTgtgaaaaatagtgaaaaa
ctactaaaaactactaaaatagaagaaaaaatgaaaattgagatCTTCTA
GAGAGGAAAATATTGAGCCTACTCTTCTTTCGGAAAGTTagctttgtttt
ttgtaaacaaaggagAGATTTCCATGTGTAAAAAAGGTAAACTTGGTACT
TTTCTAAGTTGTTAAAGTCCGTTCACTTTATGCGTGCGCTAATTCTTGTT
TTACACTTGCTTActaacatattatataccgttgaaaagataattcagag
cgctttaatttttggggaaaatgattcaaaaaaaaatacaaaataaagat
aaaaaatggAGAAGAAGAAAGATTTTTATCCTTTGTTTGTaggaacttca
tttttggtacaGAGGTACTTTGAAGCCTCCTGATTTCAGCTatataataa
ttatttttctctcAAAGTTCCTGCATCGAGCCCCTAGAAGGTAGCTCGTT
CGAGTcgaaaaatgttataaaaatggATTAATACTTTAGTTCGACTTACA
TAAAGATTCAACTTGTTCAAATTCGAATAAGAGAGGTTTGACAGTATTTA
CTTTTGCATCTTTCAGATGATGCAAGGTCAACAAGGACAACCTTATATGA
CGGCGCCTCACCCTTCCGCCATCCGTTTCATCAATCCAGCACAGCGCATG
CCCAATACCGCCAATTTCCACCCACAAGATAACAATGCGACCATCGCATC
AAGTTATATATTACAAGGTAAGGTCcacattttaaacaattttgaacaga
aatatttttacagcCTCGCAAGCCATATCTTGAGTGCTTACACACTAAAA
GGACGNTTTAAACAATTTTGAAcagaaatatttttacagcCTCGCAAGCC
ATATCTTGAGTGCTTACACACTAAAAAGACACCTCTGTATTCTCAAATAT
GTCATCGAAACGAACTTAAACATTTTCTCTTTTAGCGACACCTCATTCTG
TGGCCACACCCCACCAAACGATGGCGGCTTCCTACCAACAACATCAAACG
CCCTCTTCTCCCGCCACAGGGGGCGCCGGTTCAGTGGTGGTCTCACAACA
TTACGTACCGTCCCACCATCAGCAATACGTTATGAATAACCAAAATACAA
ATTATCAACATGTTGCGCACTCAATGCATTCACAAGGTAAACTTTACTCT
ATACTTGTATTTCCATCCTTAAGTTGCTGGGAAGAACTGATTCTAGAGAA
ATTCGGTCCCGGAAATATCACCCTACCCGGAAATCTCCTTTCGGGGAAAA
TTTCCAGGGTCTGATTGAACTTCTGTCACCGGCAGAAGTAAAGTGGACTC
TAAGAATTTTCCATAAGATGCTTTTTATGATTCGAATCTCTATGACATTC
CACCAAATTAGATTACACGCTCTGAGTCCGAATTAAgcaaaattaaaggt
tttgtcttGATTGAAAGGTCCgatgatgctgatgtagtaaaaacaagtgc
gacaagattagaaaaggttttgaaaaaacgaaaatacattgaattaaaaa
atttttcttcaaaaaaagggATTTTTACTGATACTCTTCCGAATGTTTCA
TCTTAtattataatcaaaacattcggtTGTAAATCTgctcgaaatcaact
ttgctattcttttgtttacaaaagcaataaaatgtgaggtcacatctcga
aacaactttcgatctttcacttgtttgcagAATATCGTTGCGTAAAAAAA
GTAGCTTAAATTTATCTGACTCAGCTTGAAGACACTGCAtaaaataagct
ccttttattcccgTAAAGAGCCTTTAAGCATGTACTTAGCATCAGCTTTA
CCAACAAAATTTACACCACGCCTCTAAAAACGTGTATTCCTGTTTAGGGA
ACCCAGCGGCGGCAGCAGCGGCAACGGCCGTGTACCAGCAACGACCATCA
GTATACACAGCGGGTGGACAACCTCATCATCAGCAACAACACCAACAACC
GNCGGCCGTGTACCAGCAACGACCATCAGTATACACAGCGGGTGGACAAC
CTCATCATCAACAACAACACCAACAACCGTTCGTCGTTATACCACAACCC
TTTCATCACCCAGGTAACCGAAAACTCTTTGTGGAGATTTGTCAGTTTTG
AATTGAACTTAGCATTGATGAAGCCAGTTTTTACAAGGCCAAGATACGGC
TGACGGCATTATAGCGTTATCGgcgctttaatgatttttatgtacggaat
tttaagtttgccttgaaaaacaGATATTCactcacaacttaccatcagat
tttaccaagtgactgaatcaatctggcttagatCTCTAGGCTAGCATTAG
GCTATTGCCATTATTGATGGGTTtcgataagataagataagataaaaagc
TGAAATGGAAAAAGAGGACAAGGTTAGATTGAGAGATTATTAGTTCTGTG
AAATAAAAAGACGAAAACACATTATCTCGGCTCCCATTTTTATCAGTATT
ACTGCTGTTTTTCCAACTTTAAGGTAGAGAAAAACTGAGGCATTTTCGTC
TTAGGTAACTGAAAATTCAGCATCTTAAAGGTTTCCCGAGTATATAGCCA
ACGGTGCCNGTCAGTTTTGAATTGAACTTAGCATTGATGTAGCCCGAGTA
TATAGCCAACGGTGCTTAATTATGATAacctttcttctttctttctcagG
CCAAGGAGGGTTGATTCAGCCGAACTTTCAACAGGGAAATTAGAAAAGTG
AACAcataaaaaacatagaaaatggTTCAATGGTAAGCtggtttattttt
cattcgACATCTTATCGGGTTGAGGTTTTGCGGGTCATTTCAAACCATTC
ATTTGGCTGTTAGGTTTTGAAACATTCTattttattaaaggttttgtttt
taaataagagtgatatcgtttgcttactcatcaattttaatttaaaagct
ttttcacattggattgacacggatgtgtaGCAAGATGAtcagaaagaggg
aaagaaaaacatttttttgtttataccagcacaatataacaataggcaga
cactgtcctgattagacaggagacccgtcctgtatttttataatctgatg
tatacggGACGGGTATGACCTGCGAGGCACAaatctgcctcaaaaaattt
acagtggaaAATTCGAAATTAGCGCTGCTGTCCTCactaaaacaaaaacc
aaatttcggaagttgcgctttctctaagaaagtgtgaccagcaaaagaat
aacaaaatttgattggctatgttttcaaccgttattaggatctgggaaat
tcaaactctcaggccataccatgctatatatttcgcctcaaattgttctt
ataaaacccACCCTTTTTCACAGACCCAGTAAgatattccattgttttca
agtcaaaaaaatccAGTAGGGATAGAAAGTAGCATATTGATGAtttgttt
atttaattattttcagtggggtcAAGAGCGGTGTATACTTTGCCAtttgg
ggacgatattttagccaatttttttcagtggaaggggtcccaccgggtct
gtgagaaaaggGGTGTTATAAAGATAGTGTGTATAGCAAAGATTTGGTGC
ATATGCACAGGGGGTAGATGTACCTGTCATGATGTTTACACGTTtgtcat
aagaacatccaaaattttccaagctttcgaatgttcttaacatgttctta
ttttcaccattttgtgaccatttttatcAATGTTCCTAATAAATAGTTGT
Cagcaaagcctcaaaatgttcttaacttgtacttgatatttttgccatcg
aaacTTTTAAATGATTTTACTTCTGCATTTCTCTATTTTGTGTAGGTATG
CTTACGTGGGGATGTTCAAGCGTTCAGTTTTTGCAAATgaagaaaacaca
aaaaaatagaaagcaAATTCACGTCGGGGAAATGCTCCGAATCAAGGTTG
AGAGAAGAAAAAAGAGACGAGATTACTAGTCTATGATTACAGATAGAATT
GATAGATATTTTCTCTTCGGGAAACGATACAAACTTTGTATTTTAtacga
aaaatatttagcaaAGAATAAGATTTTATGCATCCAGGATGTGACAATGC
CAAAGCAAtgtcttttcaaaaattggataaaaagatattttgatgagata
ataaaaagaaagaattcagaaatgaaataaaatta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001982XLOC_001982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003551-exon-sc0000030-1491911889:242142..242387TCONS_00003551-exon-sc0000030-1491911889:242142..242387Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1510915933:242142..242387TCONS_00003551-exon-sc0000030-1510915933:242142..242387Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1575043694:242142..242387TCONS_00003551-exon-sc0000030-1575043694:242142..242387Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1491911889:242810..242967TCONS_00003551-exon-sc0000030-1491911889:242810..242967Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1510915933:242810..242967TCONS_00003551-exon-sc0000030-1510915933:242810..242967Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1575043694:242810..242967TCONS_00003551-exon-sc0000030-1575043694:242810..242967Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1491911889:243658..243808TCONS_00003551-exon-sc0000030-1491911889:243658..243808Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1510915933:243658..243808TCONS_00003551-exon-sc0000030-1510915933:243658..243808Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1575043694:243658..243808TCONS_00003551-exon-sc0000030-1575043694:243658..243808Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1491911889:244027..244227TCONS_00003551-exon-sc0000030-1491911889:244027..244227Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1510915933:244027..244227TCONS_00003551-exon-sc0000030-1510915933:244027..244227Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1575043694:244027..244227TCONS_00003551-exon-sc0000030-1575043694:244027..244227Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1491911889:244939..245154TCONS_00003551-exon-sc0000030-1491911889:244939..245154Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1510915933:244939..245154TCONS_00003551-exon-sc0000030-1510915933:244939..245154Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1575043694:244939..245154TCONS_00003551-exon-sc0000030-1575043694:244939..245154Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1491911889:245741..245823TCONS_00003551-exon-sc0000030-1491911889:245741..245823Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1510915933:245741..245823TCONS_00003551-exon-sc0000030-1510915933:245741..245823Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1575043694:245741..245823TCONS_00003551-exon-sc0000030-1575043694:245741..245823Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1491911889:246887..247226TCONS_00003551-exon-sc0000030-1491911889:246887..247226Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1510915933:246887..247226TCONS_00003551-exon-sc0000030-1510915933:246887..247226Clytia hemisphaericaexon
TCONS_00003551-exon-sc0000030-1575043694:246887..247226TCONS_00003551-exon-sc0000030-1575043694:246887..247226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:242142..247226 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.0108	45.5514	46.4312	49.9502	25.4834	18.8685	32.5432	33.9254	23.7816	36.3127	24.8491	18.4818	20.6177	18.5145	19.8974	24.5407	43.4552	35.8993	11.89	16.0627	26.5251	26.5096	32.2208	34.2136	24.8984	23.2377	28.2477	20.9243	39.6028	41.6833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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