TCONS_00003804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003804
Unique NameTCONS_00003804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003804 ID=TCONS_00003804|Name=TCONS_00003804|organism=Clytia hemisphaerica|type=transcript|length=514bp
TATGGTTTGCTGAAAAAAATGGTTCAATCAAATAACCCcatattcattat
tttgtgttTCTTCTTCACGATTCTTTACATCACACATGCTGAAAATGTTA
AAGTTATCCACCCTGTCGACCAAAACATTGTAACCTTCCCATCCGAAAGC
ACACCTGATTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTCAAATT
GGAAGATAATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAAATTCT
CGTCAGatttgaaattgatcaaaagtGTGAAGTTGGAACCTTCCGATGAA
GATATATCAAAATGTGGAGACGTCTTGGAGAAATGTCAGAATAATATTTT
ATCGTTGGTGATTGGTGAGAATGAACACGTGCATGCTTGTGGCACTTACG
CTAAACAACCAGGATGTTGGACGTTCGATCAAGACTTGAAAGAAGTCAGT
GTCAAGAAATACAGGTTTCTTCCAACCCTCTCCAACACCAACCTGACCGT
CATGTATACAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00003804-protein

>TCONS_00003804-protein ID=TCONS_00003804-protein|Name=TCONS_00003804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
YGLLKKMVQSNNPIFIILCFFFTILYITHAENVKVIHPVDQNIVTFPSES
TPDFKDKISQVKTIVKLEDNSIVIGAVNMLAKFSSDLKLIKSVKLEPSDE
DISKCGDVLEKCQNNILSLVIGENEHVHACGTYAKQPGCWTFDQDLKEVS
VKKYRFLPTLSNTNLTVMYTG
Run BLAST on NCBI

transcript from alignment at sc0000031:534690..536668-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003804 ID=TCONS_00003804|Name=TCONS_00003804|organism=Clytia hemisphaerica|type=transcript|length=1979bp|location=Sequence derived from alignment at sc0000031:534690..536668- (Clytia hemisphaerica)
TATGGTTTGCTGAAAAAAATGGTTCAATCAAATAACCCCATATTCATTAT TTTGTGTTTCTTCTTCACGATTCTTTACATCACACATGCTGAAAATGGTG AGTATAATTATTATTTTTTTTAATTTCGTTTATGAAATGTAAAGGAGACT GGGTTCAGGCCATGATGTTTTAAATTGAAAATGTTATGGTTCAAGATAAC CGAATTTGATTGTCGTGAAATTTCTTGGACGCAACATTGGTAGCTCACAG ACACATTTTGACGTCACTTTACCCTAGTGAATTTGAGCCCAGTCTCTTTG CGGCAGATATTCCTGACATCAGATTTTTAGAAATCGTACGAATACGTACT AAACTATTGTGTTTATTTGTTGTTTAAAAAATTTCCCAGCATGCTTTATC CTCCGGATTTTTTATGGTTATTCTTTTGATTCACAGTGCTTAGATATTGA AACTAAAATATTCCCAATCAAGTTACCCGCATCGAGAACTTCAGATTTCT TTTTCACTTTTGCGGTACCCCTCTTCAAACAATGCCGTCAAATATTTTGG TTGACCGGGATCTCCAGGGTTTTTAATTATAAAGCTCGGGTCATTGTTTT AAATCGAGAAATCCTAACTTATCTTATATGAATATTTATTTTTTGCAGTT AAAGTTATCCACCCTGTCGACCAAAACATTGTAACCTTCCCATCCGAAAG CACACCTGATTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTCAAAT TGGAAGATAATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAAATTC TCGTCAGATTTGAAATTGATCAAAAGTGTGAAGTTGGAACCTTCCGATGA AGATATATCAAAATGTGGAGACGTCGTAAGATTTTTCTTCTCTCTTTTTG AAATTGTTTCCAAAATAGATAACAGACAATTTCACTTTCGAAATGAATCA ATGGCAATCAGGACTGATTGCATCCCCATAAAGGCTTCCCGTTGGTTAAA TACAAAAACCTCCAAATATATACTTCAGAGCGCATACGGTCCTCGTTACC CATGATTCTTTTCGCTCGTGAAATGACCTCTTTGAAACACACGATGCTTC CTTCACCTAGATAGTAAATTATACGGGAGATCATCTTAAGTTTGAAAGCT TTATATGTGTTGATGTAGCGTTTGGTTTGGTGCAAGGGAATTCTTTTTCT ACTCCCTTCAAAATATGGAATTTCACGTTTCAATATTAATGCTTCTGAAT GAGCTCCTCTCCAATGGTTTAAAAAGATTATCCTCATTTTTTTTTAGTTG GAGAAATGTCAGAATAATATTTTATCGTTGGTGATTGGTGAGAATGAACA CGTGCATGCTTGTGGCACTTACGCTAAACAACCAGGATGTTGGACGTTCG ATGTAAGGCTTTTTACTCTGTTTACTTCTTTTATTAGATACACTGGAGCC TCTTTAACTCGACACGCACAGGGGGGACGCGCCGATTGCTTCGAGTTAAG GAGACTCCACTTTACTGAAAAACTTGCACATTTCATTTTGTGGAGACAGG GCAGCATCCACGGGAAAGAAAGATAGATAATTTTTCTTCTGCTTTCCACA AAATTGGCTGCTTTTGCCATCGTCATTATTAACAATAAATGGTATAGATG ACAGTGTTTATTTAATATTATCCGGCTTTGAAACTCCTGCTCTACGTGGT AACATTCTCTTATTTGAAATCTCTATGATAGTATATGTTCAATAAGCAAA TTCCCGATGATGGGAGTTACTAAATGGCCGTCTTTAGAAGTACCTATAGA CTAATAGTAAACCTAAAAGCCTGGAGCTAGGTCTGTTGTGTGCACTAGGC ATTTTAAGAATTTAATAACAATTCATTTTTTATTTCGTTTTCAGCAAGAC TTGAAAGAAGTCAGTGTCAAGAAATACAGGTTTCTTCCAACCCTCTCCAA CACCAACCTGACCGTCATGTATACAGGTA

Coding sequence (CDS) from alignment at sc0000031:534690..536668-

>TCONS_00003804 ID=TCONS_00003804|Name=TCONS_00003804|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000031:534690..536668- (Clytia hemisphaerica)
CAAGACTTGAAAGAAGTCAGTGTCAAGAAATACAGGTTTCTTCCAACCCT
CTCCAACACCAACCTGACCGTCATGTATACAGGTTTGGAGAAATGTCAGA
ATAATATTTTATCGTTGGTGATTGGTGAGAATGAACACGTGCATGCTTGT
GGCACTTACGCTAAACAACCAGGATGTTGGACGTTCGATTTAAAGTTATC
CACCCTGTCGACCAAAACATTGTAACCTTCCCATCCGAAAGCACACCTGA
TTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTCAAATTGGAAGATA
ATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAAATTCTCGTCAGAT
TTGAAATTGATCAAAAGTGTGAAGTTGGAACCTTCCGATGAAGATATATC
AAAATGTGGAGACGTCTATGGTTTGCTGAAAAAAATGGTTCAATCAAATA
ACCCCATATTCATTATTTTGTGTTTCTTCTTCACGATTCTTTACATCACA
CATGCTGAAAATGCAAGACTTGAAAGAAGTCAGTGTCAAGAAATACAGGT
TTCTTCCAACCCTCTCCAACACCAACCTGACCGTCATGTATACAGGTTTG
GAGAAATGTCAGAATAATATTTTATCGTTGGTGATTGGTGAGAATGAACA
CGTGCATGCTTGTGGCACTTACGCTAAACAACCAGGATGTTGGACGTTCG
ATTTAAAGTTATCCACCCTGTCGACCAAAACATTGTAACCTTCCCATCCG
AAAGCACACCTGATTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTC
AAATTGGAAGATAATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAA
ATTCTCGTCAGATTTGAAATTGATCAAAAGTGTGAAGTTGGAACCTTCCG
ATGAAGATATATCAAAATGTGGAGACGTCTATGGTTTGCTGAAAAAAATG
GTTCAATCAAATAACCCCATATTCATTATTTTGTGTTTCTTCTTCACGAT
TCTTTACATCACACATGCTGAAAATGCAAGACTTGAAAGAAGTCAGTGTC
AAGAAATACAGGTTTCTTCCAACCCTCTCCAACACCAACCTGACCGTCAT
GTATACAGGTTTGGAGAAATGTCAGAATAATATTTTATCGTTGGTGATTG
GTGAGAATGAACACGTGCATGCTTGTGGCACTTACGCTAAACAACCAGGA
TGTTGGACGTTCGATTTAAAGTTATCCACCCTGTCGACCAAAACATTGTA
ACCTTCCCATCCGAAAGCACACCTGATTTCAAAGACAAAATCTCGCAAGT
CAAAACTATCGTCAAATTGGAAGATAATTCTATAGTCATTGGTGCTGTTA
ACATGCTGGCAAAATTCTCGTCAGATTTGAAATTGATCAAAAGTGTGAAG
TTGGAACCTTCCGATGAAGATATATCAAAATGTGGAGACGTCTATGGTTT
GCTGAAAAAAATGGTTCAATCAAATAACCCCATATTCATTATTTTGTGTT
TCTTCTTCACGATTCTTTACATCACACATGCTGAAAATGCAAGACTTGAA
AGAAGTCAGTGTCAAGAAATACAGGTTTCTTCCAACCCTCTCCAACACCA
ACCTGACCGTCATGTATACAGGTTTGGAGAAATGTCAGAATAATATTTTA
TCGTTGGTGATTGGTGAGAATGAACACGTGCATGCTTGTGGCACTTACGC
TAAACAACCAGGATGTTGGACGTTCGATTTAAAGTTATCCACCCTGTCGA
CCAAAACATTGTAACCTTCCCATCCGAAAGCACACCTGATTTCAAAGACA
AAATCTCGCAAGTCAAAACTATCGTCAAATTGGAAGATAATTCTATAGTC
ATTGGTGCTGTTAACATGCTGGCAAAATTCTCGTCAGATTTGAAATTGAT
CAAAAGTGTGAAGTTGGAACCTTCCGATGAAGATATATCAAAATGTGGAG
ACGTCTATGGTTTGCTGAAAAAAATGGTTCAATCAAATAACCCCATATTC
ATTATTTTGTGTTTCTTCTTCACGATTCTTTACATCACACATGCTGAAAA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002119XLOC_002119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003804-exon-sc0000031-1575043694:536572..536668TCONS_00003804-exon-sc0000031-1575043694:536572..536668Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1575043694:535794..536020TCONS_00003804-exon-sc0000031-1575043694:535794..536020Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1575043694:535267..535371TCONS_00003804-exon-sc0000031-1575043694:535267..535371Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1575043694:534690..534774TCONS_00003804-exon-sc0000031-1575043694:534690..534774Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:536572..536668TCONS_00003804-exon-sc0000031-1510915933:536572..536668Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:535794..536020TCONS_00003804-exon-sc0000031-1510915933:535794..536020Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:535267..535371TCONS_00003804-exon-sc0000031-1510915933:535267..535371Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:534690..534774TCONS_00003804-exon-sc0000031-1510915933:534690..534774Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:536572..536668TCONS_00003804-exon-sc0000031-1491911889:536572..536668Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:535794..536020TCONS_00003804-exon-sc0000031-1491911889:535794..536020Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:535267..535371TCONS_00003804-exon-sc0000031-1491911889:535267..535371Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:534690..534774TCONS_00003804-exon-sc0000031-1491911889:534690..534774Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003804-proteinTCONS_00003804-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:534690..536668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21009 2.49548 0.921928 1.93278 59.6086 48.2191 53.6878 51.382 23.7211 31.0822 18.7379 20.2194 23.5951 18.7996 16.7769 26.2265 18.2502 22.7334 25.9668 40.2409 9.67201 11.3553 8.6691 10.1853 27.7252 26.4159 60.9284 55.8325 56.2905 54.5888
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001627Semap_dom
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top