TCONS_00003804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003804
Unique NameTCONS_00003804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003804 ID=TCONS_00003804|Name=TCONS_00003804|organism=Clytia hemisphaerica|type=transcript|length=514bp
TATGGTTTGCTGAAAAAAATGGTTCAATCAAATAACCCcatattcattat
tttgtgttTCTTCTTCACGATTCTTTACATCACACATGCTGAAAATGTTA
AAGTTATCCACCCTGTCGACCAAAACATTGTAACCTTCCCATCCGAAAGC
ACACCTGATTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTCAAATT
GGAAGATAATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAAATTCT
CGTCAGatttgaaattgatcaaaagtGTGAAGTTGGAACCTTCCGATGAA
GATATATCAAAATGTGGAGACGTCTTGGAGAAATGTCAGAATAATATTTT
ATCGTTGGTGATTGGTGAGAATGAACACGTGCATGCTTGTGGCACTTACG
CTAAACAACCAGGATGTTGGACGTTCGATCAAGACTTGAAAGAAGTCAGT
GTCAAGAAATACAGGTTTCTTCCAACCCTCTCCAACACCAACCTGACCGT
CATGTATACAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00003804-protein

>TCONS_00003804-protein ID=TCONS_00003804-protein|Name=TCONS_00003804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
YGLLKKMVQSNNPIFIILCFFFTILYITHAENVKVIHPVDQNIVTFPSES
TPDFKDKISQVKTIVKLEDNSIVIGAVNMLAKFSSDLKLIKSVKLEPSDE
DISKCGDVLEKCQNNILSLVIGENEHVHACGTYAKQPGCWTFDQDLKEVS
VKKYRFLPTLSNTNLTVMYTG
Run BLAST on NCBI

transcript from alignment at sc0000031:534690..536668-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003804 ID=TCONS_00003804|Name=TCONS_00003804|organism=Clytia hemisphaerica|type=transcript|length=1979bp|location=Sequence derived from alignment at sc0000031:534690..536668- (Clytia hemisphaerica)
TATGGTTTGCTGAAAAAAATGGTTCAATCAAATAACCCCATATTCATTAT
TTTGTGTTTCTTCTTCACGATTCTTTACATCACACATGCTGAAAATGGTG
AGTATAATTATTATTTTTTTTAATTTCGTTTATGAAATGTAAAGGAGACT
GGGTTCAGGCCATGATGTTTTAAATTGAAAATGTTATGGTTCAAGATAAC
CGAATTTGATTGTCGTGAAATTTCTTGGACGCAACATTGGTAGCTCACAG
ACACATTTTGACGTCACTTTACCCTAGTGAATTTGAGCCCAGTCTCTTTG
CGGCAGATATTCCTGACATCAGATTTTTAGAAATCGTACGAATACGTACT
AAACTATTGTGTTTATTTGTTGTTTAAAAAATTTCCCAGCATGCTTTATC
CTCCGGATTTTTTATGGTTATTCTTTTGATTCACAGTGCTTAGATATTGA
AACTAAAATATTCCCAATCAAGTTACCCGCATCGAGAACTTCAGATTTCT
TTTTCACTTTTGCGGTACCCCTCTTCAAACAATGCCGTCAAATATTTTGG
TTGACCGGGATCTCCAGGGTTTTTAATTATAAAGCTCGGGTCATTGTTTT
AAATCGAGAAATCCTAACTTATCTTATATGAATATTTATTTTTTGCAGTT
AAAGTTATCCACCCTGTCGACCAAAACATTGTAACCTTCCCATCCGAAAG
CACACCTGATTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTCAAAT
TGGAAGATAATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAAATTC
TCGTCAGATTTGAAATTGATCAAAAGTGTGAAGTTGGAACCTTCCGATGA
AGATATATCAAAATGTGGAGACGTCGTAAGATTTTTCTTCTCTCTTTTTG
AAATTGTTTCCAAAATAGATAACAGACAATTTCACTTTCGAAATGAATCA
ATGGCAATCAGGACTGATTGCATCCCCATAAAGGCTTCCCGTTGGTTAAA
TACAAAAACCTCCAAATATATACTTCAGAGCGCATACGGTCCTCGTTACC
CATGATTCTTTTCGCTCGTGAAATGACCTCTTTGAAACACACGATGCTTC
CTTCACCTAGATAGTAAATTATACGGGAGATCATCTTAAGTTTGAAAGCT
TTATATGTGTTGATGTAGCGTTTGGTTTGGTGCAAGGGAATTCTTTTTCT
ACTCCCTTCAAAATATGGAATTTCACGTTTCAATATTAATGCTTCTGAAT
GAGCTCCTCTCCAATGGTTTAAAAAGATTATCCTCATTTTTTTTTAGTTG
GAGAAATGTCAGAATAATATTTTATCGTTGGTGATTGGTGAGAATGAACA
CGTGCATGCTTGTGGCACTTACGCTAAACAACCAGGATGTTGGACGTTCG
ATGTAAGGCTTTTTACTCTGTTTACTTCTTTTATTAGATACACTGGAGCC
TCTTTAACTCGACACGCACAGGGGGGACGCGCCGATTGCTTCGAGTTAAG
GAGACTCCACTTTACTGAAAAACTTGCACATTTCATTTTGTGGAGACAGG
GCAGCATCCACGGGAAAGAAAGATAGATAATTTTTCTTCTGCTTTCCACA
AAATTGGCTGCTTTTGCCATCGTCATTATTAACAATAAATGGTATAGATG
ACAGTGTTTATTTAATATTATCCGGCTTTGAAACTCCTGCTCTACGTGGT
AACATTCTCTTATTTGAAATCTCTATGATAGTATATGTTCAATAAGCAAA
TTCCCGATGATGGGAGTTACTAAATGGCCGTCTTTAGAAGTACCTATAGA
CTAATAGTAAACCTAAAAGCCTGGAGCTAGGTCTGTTGTGTGCACTAGGC
ATTTTAAGAATTTAATAACAATTCATTTTTTATTTCGTTTTCAGCAAGAC
TTGAAAGAAGTCAGTGTCAAGAAATACAGGTTTCTTCCAACCCTCTCCAA
CACCAACCTGACCGTCATGTATACAGGTA

Coding sequence (CDS) from alignment at sc0000031:534690..536668-

>TCONS_00003804 ID=TCONS_00003804|Name=TCONS_00003804|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000031:534690..536668- (Clytia hemisphaerica)
CAAGACTTGAAAGAAGTCAGTGTCAAGAAATACAGGTTTCTTCCAACCCT
CTCCAACACCAACCTGACCGTCATGTATACAGGTTTGGAGAAATGTCAGA
ATAATATTTTATCGTTGGTGATTGGTGAGAATGAACACGTGCATGCTTGT
GGCACTTACGCTAAACAACCAGGATGTTGGACGTTCGATTTAAAGTTATC
CACCCTGTCGACCAAAACATTGTAACCTTCCCATCCGAAAGCACACCTGA
TTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTCAAATTGGAAGATA
ATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAAATTCTCGTCAGAT
TTGAAATTGATCAAAAGTGTGAAGTTGGAACCTTCCGATGAAGATATATC
AAAATGTGGAGACGTCTATGGTTTGCTGAAAAAAATGGTTCAATCAAATA
ACCCCATATTCATTATTTTGTGTTTCTTCTTCACGATTCTTTACATCACA
CATGCTGAAAATGCAAGACTTGAAAGAAGTCAGTGTCAAGAAATACAGGT
TTCTTCCAACCCTCTCCAACACCAACCTGACCGTCATGTATACAGGTTTG
GAGAAATGTCAGAATAATATTTTATCGTTGGTGATTGGTGAGAATGAACA
CGTGCATGCTTGTGGCACTTACGCTAAACAACCAGGATGTTGGACGTTCG
ATTTAAAGTTATCCACCCTGTCGACCAAAACATTGTAACCTTCCCATCCG
AAAGCACACCTGATTTCAAAGACAAAATCTCGCAAGTCAAAACTATCGTC
AAATTGGAAGATAATTCTATAGTCATTGGTGCTGTTAACATGCTGGCAAA
ATTCTCGTCAGATTTGAAATTGATCAAAAGTGTGAAGTTGGAACCTTCCG
ATGAAGATATATCAAAATGTGGAGACGTCTATGGTTTGCTGAAAAAAATG
GTTCAATCAAATAACCCCATATTCATTATTTTGTGTTTCTTCTTCACGAT
TCTTTACATCACACATGCTGAAAATGCAAGACTTGAAAGAAGTCAGTGTC
AAGAAATACAGGTTTCTTCCAACCCTCTCCAACACCAACCTGACCGTCAT
GTATACAGGTTTGGAGAAATGTCAGAATAATATTTTATCGTTGGTGATTG
GTGAGAATGAACACGTGCATGCTTGTGGCACTTACGCTAAACAACCAGGA
TGTTGGACGTTCGATTTAAAGTTATCCACCCTGTCGACCAAAACATTGTA
ACCTTCCCATCCGAAAGCACACCTGATTTCAAAGACAAAATCTCGCAAGT
CAAAACTATCGTCAAATTGGAAGATAATTCTATAGTCATTGGTGCTGTTA
ACATGCTGGCAAAATTCTCGTCAGATTTGAAATTGATCAAAAGTGTGAAG
TTGGAACCTTCCGATGAAGATATATCAAAATGTGGAGACGTCTATGGTTT
GCTGAAAAAAATGGTTCAATCAAATAACCCCATATTCATTATTTTGTGTT
TCTTCTTCACGATTCTTTACATCACACATGCTGAAAATGCAAGACTTGAA
AGAAGTCAGTGTCAAGAAATACAGGTTTCTTCCAACCCTCTCCAACACCA
ACCTGACCGTCATGTATACAGGTTTGGAGAAATGTCAGAATAATATTTTA
TCGTTGGTGATTGGTGAGAATGAACACGTGCATGCTTGTGGCACTTACGC
TAAACAACCAGGATGTTGGACGTTCGATTTAAAGTTATCCACCCTGTCGA
CCAAAACATTGTAACCTTCCCATCCGAAAGCACACCTGATTTCAAAGACA
AAATCTCGCAAGTCAAAACTATCGTCAAATTGGAAGATAATTCTATAGTC
ATTGGTGCTGTTAACATGCTGGCAAAATTCTCGTCAGATTTGAAATTGAT
CAAAAGTGTGAAGTTGGAACCTTCCGATGAAGATATATCAAAATGTGGAG
ACGTCTATGGTTTGCTGAAAAAAATGGTTCAATCAAATAACCCCATATTC
ATTATTTTGTGTTTCTTCTTCACGATTCTTTACATCACACATGCTGAAAA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002119XLOC_002119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003804-exon-sc0000031-1575043694:536572..536668TCONS_00003804-exon-sc0000031-1575043694:536572..536668Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1575043694:535794..536020TCONS_00003804-exon-sc0000031-1575043694:535794..536020Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1575043694:535267..535371TCONS_00003804-exon-sc0000031-1575043694:535267..535371Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1575043694:534690..534774TCONS_00003804-exon-sc0000031-1575043694:534690..534774Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:536572..536668TCONS_00003804-exon-sc0000031-1510915933:536572..536668Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:535794..536020TCONS_00003804-exon-sc0000031-1510915933:535794..536020Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:535267..535371TCONS_00003804-exon-sc0000031-1510915933:535267..535371Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1510915933:534690..534774TCONS_00003804-exon-sc0000031-1510915933:534690..534774Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:536572..536668TCONS_00003804-exon-sc0000031-1491911889:536572..536668Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:535794..536020TCONS_00003804-exon-sc0000031-1491911889:535794..536020Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:535267..535371TCONS_00003804-exon-sc0000031-1491911889:535267..535371Clytia hemisphaericaexon
TCONS_00003804-exon-sc0000031-1491911889:534690..534774TCONS_00003804-exon-sc0000031-1491911889:534690..534774Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003804-proteinTCONS_00003804-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:534690..536668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21009	2.49548	0.921928	1.93278	59.6086	48.2191	53.6878	51.382	23.7211	31.0822	18.7379	20.2194	23.5951	18.7996	16.7769	26.2265	18.2502	22.7334	25.9668	40.2409	9.67201	11.3553	8.6691	10.1853	27.7252	26.4159	60.9284	55.8325	56.2905	54.5888
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001627Semap_dom
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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