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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004281 ID=TCONS_00004281|Name=TCONS_00004281|organism=Clytia hemisphaerica|type=transcript|length=1217bp
taaatattcaaaatgaaagagtgtccagttcttagagatattgtaacaca
attgaaaatataaacgatgaaaattaagcatttgaataatcgcacgccta
gaccactataaatcaaaatctaggcgtgcgatgatcacacgtgaattttt
cttatgccgaagcctgtaGCGATGTCGAGTTACTACAGATTTAAGGTAAA
GAAGACCATCATTTTAACTTCtacgagtgctttaaaaaatcgagttttgg
gatcgaaatttagcaaaaaNtgcggccggccgggtgagtgtttttttcgt
cacccggtggaccggaaacaaaaatatttttagggttcgcCTATGGATCA
TTTGTCAGTATTTTTGTTCTTCATCTTAGCTTTACCCGAGGAAGAGAGGT
TGAGCTTCACACAAGACATGATGAAAAATTCAATGGCTGAAGAAAATCGT
ATTATTTTGTCATATCTCATGCACTTTCTACAGAAGGTTGTGGACCACTC
ATCAGCCAATCGAATGACGTCTGGTAGTTTAGCAATTGTTTTTGGCCCCA
ATATTTTGTGGTCTCGTTCGGAGGCCTCTACTTTGACGTCGATGTCAAAA
GTGAACTCTTTCTGCAAATATCTAATTGACAATACGCATCTGATATTTGA
TGAATCGGTCGCTTGATAAAAATTGTCGCATAAAGACGAGTTTAGTTCAT
TTCATTCTGGACTACCTCATTGAACCGGGGACTAGTGAGTGGTGAGTCAA
TTGCCTATATCGCGATCACTGGAACACTAGACTACTTGTCTCCACTGTGT
ACTTTACGTATGCATACTCGGCCGCTGGATATGGAGTTATAATGGGATAG
AACTGATGATGTAGTCAGGTTACAGTTGATGaatgaaatcaaattttatt
acatTAAATTATATAATTAGCTAATTACtagtttattttgaaatttccat
tgaAAGCTTACATTGGGAACAAGTGAAAATCCAAAGTACTTTCACATTCG
AATTCAAGTAAAATCATACTATTTCCAAACATAATTTCACTTTGATTTTT
ACAATCTTGAATGCTTTAGTTACCTGTTTATCACGAATAataattattta
tatttttatagatCGAAATCTTTGCAGTGCATGACGAGCATGCGCAACGG
TTGTAAATACTacgaatttcttttttttcttctcataCATAGAAAATATA
AATCGTGACCATTTGCG Run BLAST on NCBI transcript from alignment at sc0000041:376028..377774- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004281 ID=TCONS_00004281|Name=TCONS_00004281|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at sc0000041:376028..377774- (Clytia hemisphaerica)
TAAATATTCAAAATGAAAGAGTGTCCAGTTCTTAGAGATATTGTAACACA
ATTGAAAATATAAACGATGAAAATTAAGCATTTGAATAATCGCACGCCTA
GACCACTATAAATCAAAATCTAGGCGTGCGATGATCACACGTGAATTTTT
CTTATGCCGAAGCCTGTAGCGATGTCGAGTTACTACAGATTTAAGGTAAA
GAAGACCATCATTTTAACTTCTACGAGTGCTTTAAAAAATCGAGTTTTGG
GATCGAAATTTAGCAAAAANTGCGGCCGGCCGGGTGAGTGTTTTTTTCGT
CACCCGGTGGACCGGAAACAAAAATATTTTTAGGGTTCGCCTATGGATCA
TTTGTCAGTATTTTTGTTCTTCATCTTAGCTTTACCCGAGGAAGAGAGGT
TGAGCTTCACACAAGACATGATGAAAAATTCAATGGCTGAAGAAAATCGT
ATTATTTTGTCATATCTCATGCACTTTCTACAGAAGGTATTAACCACTCA
TTATGCTACTCAACTAGGGATGAAAGCAACATTGATATTTGGGGAAGATT
TTGTGCTTGATTTGGAATTTCTTTGGGATTCTTTATATTTCACGATACGT
TATGTGGGTAATAGCTTAAAAGAGTCTGGACTGAAGGGGACTGAAATTCT
AAGCACTACAAAGGGTGAAAGAACCAAGATGATTATAGTAGAAGCCAACC
CTCAGGACTTGTTGTAGTATACTTTTTTGTTCAGAATTTCATGTGCCATC
CGATGATAACAATCATTTTCGTTTGATTCAACTTTGAAAAATTGTTCACT
TATTTTAAGGTTTTGGAGTTTTGCCTACGACGTCAGTTTTTTGGCCATAT
AAACTTTTGCCAGGCCTAATGTGGGTCCCCTCTCAAAAAAAGTTTCAAAA
TCCTATCTACTTTCGAACCGATCACATAGGGTTGAGTCCCACGAAAGATG
CTACGGACCCTAAGGGTTGGTCCCCTGCTATTACTTAAAATAATTTTCTC
ACTTCGATATTTTCAGGTTGTGGACCACTCATCAGCCAATCGAATGACGT
CTGGTAGTTTAGCAATTGTTTTTGGCCCCAATATTTTGTGGTCTCGTTCG
GAGGCCTCTACTTTGACGTCGATGTCAAAAGTGAACTCTTTCTGCAAATA
TCTAATTGACAATACGCATCTGATATTTGATGAATCGGTCGCTTGATAAA
AATTGTCGCATAAAGACGAGTTTAGTTCATTTCATTCTGGACTACCTCAT
TGAACCGGGGACTAGTGAGTGGTGAGTCAATTGCCTATATCGCGATCACT
GGAACACTAGACTACTTGTCTCCACTGTGTACTTTACGTATGCATACTCG
GCCGCTGGATATGGAGTTATAATGGGATAGAACTGATGATGTAGTCAGGT
TACAGTTGATGAATGAAATCAAATTTTATTACATTAAATTATATAATTAG
CTAATTACTAGTTTATTTTGAAATTTCCATTGAAAGCTTACATTGGGAAC
AAGTGAAAATCCAAAGTACTTTCACATTCGAATTCAAGTAAAATCATACT
ATTTCCAAACATAATTTCACTTTGATTTTTACAATCTTGAATGCTTTAGT
TACCTGTTTATCACGAATAATAATTATTTATATTTTTATAGATCGAAATC
TTTGCAGTGCATGACGAGCATGCGCAACGGTTGTAAATACTACGAATTTC
TTTTTTTTCTTCTCATACATAGAAAATATAAATCGTGACCATTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004281-exon-sc0000041-1575043694:377289..377774 | TCONS_00004281-exon-sc0000041-1575043694:377289..377774 | Clytia hemisphaerica | exon |
| TCONS_00004281-exon-sc0000041-1575043694:376028..376758 | TCONS_00004281-exon-sc0000041-1575043694:376028..376758 | Clytia hemisphaerica | exon |
| TCONS_00004281-exon-sc0000041-1510915933:377289..377774 | TCONS_00004281-exon-sc0000041-1510915933:377289..377774 | Clytia hemisphaerica | exon |
| TCONS_00004281-exon-sc0000041-1510915933:376028..376758 | TCONS_00004281-exon-sc0000041-1510915933:376028..376758 | Clytia hemisphaerica | exon |
| TCONS_00004281-exon-sc0000041-1491911889:377289..377774 | TCONS_00004281-exon-sc0000041-1491911889:377289..377774 | Clytia hemisphaerica | exon |
| TCONS_00004281-exon-sc0000041-1491911889:376028..376758 | TCONS_00004281-exon-sc0000041-1491911889:376028..376758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:376028..377774 - |
Blast
The following BLAST results are available for this feature:
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