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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004282 ID=TCONS_00004282|Name=TCONS_00004282|organism=Clytia hemisphaerica|type=transcript|length=2046bpRun BLAST on NCBI protein sequence of TCONS_00004282-protein >TCONS_00004282-protein ID=TCONS_00004282-protein|Name=TCONS_00004282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MEDTDSSGDHRRSGMLLDEDFNVYEEQKETDEELSKAALQEIAAGDTTGSRun BLAST on NCBI transcript from alignment at sc0000041:376028..383437- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004282 ID=TCONS_00004282|Name=TCONS_00004282|organism=Clytia hemisphaerica|type=transcript|length=7410bp|location=Sequence derived from alignment at sc0000041:376028..383437- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:376028..383437- >TCONS_00004282 ID=TCONS_00004282|Name=TCONS_00004282|organism=Clytia hemisphaerica|type=CDS|length=16740bp|location=Sequence derived from alignment at sc0000041:376028..383437- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004282 vs. Swiss-Prot (Human)
Match: RHG01 (Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1) HSP 1 Score: 351.288 bits (900), Expect = 4.995e-113 Identity = 174/369 (47.15%), Postives = 252/369 (68.29%), Query Frame = 2
Query: 380 YADIARYKIFQLAGDDLTGRPVIAFSACRLPVRNLIDHQKLFNFLKLMLDQYVENDYTIVYFHYGLNSQNKPSLKWLLNIYRELERKYRKNLKALYIVHPSNFIKIIFNMFYPLISTKFGRKINNIKKLDELAPHIRLDQLDIPKEVRDHDEKITVRMKPSNNSSIFHTKLETPKTQVFGISLKTLKERTGED--IPEVVRSTVQFIEQNALDVEGIFRRSPHANSVKDVSQKYNHGEQVTFSS-DEVHLPAAILKKFLRELPDPLLTFELYDQVMDACSLPEEERLSFTQDMMKNSMAEENRIILSYLMHFLQKVVDHSSANRMTSGSLAIVFGPNILWSRSEASTLTSMSKVNSFCKYLIDNTHLIF 1477
Y DIAR++I ++AGDD GR +I FSACR+P + +DH KL +LK LDQYVE+DYT++Y H+GL S NKPSL WL + YRE +RKY+KN+KALYIVHP+ FIK + +F PLIS KFG+KI + L EL+ H++L+QL IP++V +D+ + K + Q FG+SL+ L+E+ E IP V+R TV +++ +AL EGIFRRS + V++V QKYN G V F +E+HLPA ILK FLRELP+PLLTF+LY V+ ++ E +R+ T +++ ++ EEN +L +L FL ++ HS N+MT+ +LA+VFGPN+LW++ A TL +++ +N+F K+L+D+ +F
Sbjct: 64 YYDIARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLLYLHHGLTSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFGQKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF 431 The following BLAST results are available for this feature:
BLAST of TCONS_00004282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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