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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004361 ID=TCONS_00004361|Name=TCONS_00004361|organism=Clytia hemisphaerica|type=transcript|length=1720bpRun BLAST on NCBI protein sequence of TCONS_00004361-protein >TCONS_00004361-protein ID=TCONS_00004361-protein|Name=TCONS_00004361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp MSLTEMIFVGILCSFLSLTKSGKVKVVDAPFSFNNPIGSNPGTQNQEKKLRun BLAST on NCBI transcript from alignment at sc0000044:209114..222989+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004361 ID=TCONS_00004361|Name=TCONS_00004361|organism=Clytia hemisphaerica|type=transcript|length=13876bp|location=Sequence derived from alignment at sc0000044:209114..222989+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000044:209114..222989+ >TCONS_00004361 ID=TCONS_00004361|Name=TCONS_00004361|organism=Clytia hemisphaerica|type=CDS|length=14652bp|location=Sequence derived from alignment at sc0000044:209114..222989+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004361 vs. Swiss-Prot (Human)
Match: GNPTG (N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Homo sapiens GN=GNPTG PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 6.648e-49 Identity = 83/202 (41.09%), Postives = 120/202 (59.41%), Query Frame = 3
Query: 198 KVKVVDAP--FSFNNPIGSNPGTQNQEKKLILRFNPEKPSGPPFLIEKLNGKCFDLMHNNYKYQFCPFHNITQREQTYRWNSYHGVLGVWKHWTIEKSLFTQMEMHHGDVCHGTQERQVFVVLQCGEENKILSVTEPETCKYKLIFKTPYVCPKDVFHVLPVLSKTSRQKWSKIENDFKNGLLTKIGYDKRINAILSEEGLI 797
K+KVV+ P F NNP Q +L + +P SGP L +L+GKCF L+ + YKY+FCPFHN+TQ EQT+RWN+Y G+LG+W W I + FT M M GD C ++ RQ V L CG+ N++ V+EP TC Y L F+TP VC V P L + +++W ++E D + L+T G++K + + + G +
Sbjct: 26 KMKVVEEPNAFGVNNPF------LPQASRLQAKRDPSPVSGPVHLF-RLSGKCFSLVESTYKYEFCPFHNVTQHEQTFRWNAYSGILGIWHEWEIANNTFTGMWMRDGDACR-SRSRQSKVELACGKSNRLAHVSEPSTCVYALTFETPLVCHPHALLVYPTLPEALQRQWDQVEQDLADELITPQGHEKLLRTLFEDAGYL 219 The following BLAST results are available for this feature:
BLAST of TCONS_00004361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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