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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004427 ID=TCONS_00004427|Name=TCONS_00004427|organism=Clytia hemisphaerica|type=transcript|length=4641bpRun BLAST on NCBI protein sequence of TCONS_00004427-protein >TCONS_00004427-protein ID=TCONS_00004427-protein|Name=TCONS_00004427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp MGNYIPFAMGLNQTDSNGIENLDGSNASTYRYPPKSGAYFANHFVMAGERRun BLAST on NCBI transcript from alignment at sc0000044:688852..701161- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004427 ID=TCONS_00004427|Name=TCONS_00004427|organism=Clytia hemisphaerica|type=transcript|length=12310bp|location=Sequence derived from alignment at sc0000044:688852..701161- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000044:688852..701161- >TCONS_00004427 ID=TCONS_00004427|Name=TCONS_00004427|organism=Clytia hemisphaerica|type=CDS|length=23940bp|location=Sequence derived from alignment at sc0000044:688852..701161- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004427 vs. Swiss-Prot (Human)
Match: MGRN1 (E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2) HSP 1 Score: 281.952 bits (720), Expect = 1.263e-81 Identity = 149/324 (45.99%), Postives = 212/324 (65.43%), Query Frame = 2
Query: 254 GIENLDGSNASTYRYPPKSGAYFANHFVMAGERFDNINSETFLFGENNDLNYLSSKPVPFPYHSPSENEPSHTIRCMVHLRKDSLKMIREKNDVEQGA--GEAASDKYHLQFTFDSDIDCAVRIFMMAKEEITDGAAEYLSRKPELVAEPVFFTKGSGQNFNNTEFKITPDDFQPAELSYVAGSQEIPLIIQITSEDPEYP---GHSESTIAGIEKLSDGSYTIKFMKQKIMVDGFSMMLQELYGIENKNNANGKIXXXXXXXXXXXXXXXXMSSLRDTVMLPCRHLCLCSDCAGHMRNKQSRCPICRANFYALLQIKGVRKNP 1210
G+E++D S YRYPPKSG YFA+HF M GE+FD + E +LFGEN DLN+L S+PV FPY +P+ +EP T+R +V++RKDSL+++R K+D + G+ Y L+FTFD+D A+ I+ A EE +G A Y + P L +E V + +G Q F+ FKI +++ EL++ P++IQ ++ + GH+ +A EK DGS+++K +KQK +VD S +LQE+YGIENKNN K +D+ D++ ECVVC+S LRDT++LPCRHLCLC+ CA +R + + CPICR F ALLQI+ VRK P
Sbjct: 11 GVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDLNFLGSRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETK-PSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKP 333 The following BLAST results are available for this feature:
BLAST of TCONS_00004427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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