TCONS_00004504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004504
Unique NameTCONS_00004504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004504 ID=TCONS_00004504|Name=TCONS_00004504|organism=Clytia hemisphaerica|type=transcript|length=2253bp
TTAATAACCATTAATTATGCCACTGGCATCATATGTGATCGCTCATTCTT
TTTGGTCCTGTGCTAGTAGGAGCACCTCGACCATACCACCCTGCTTTTGA
TCTCTCCCAAATAAAAGCTGAGGAGCAACTAAAGGAAATCAATCATTGCT
TAGTTTATCACATTATCAGCTTACTGATAAAGCCAAATAATattctggcg
tccatcagtaagGTAAATAAAGAGCAATACATTGTAAATAAATGGGCGTG
GCCCGATAATTTATCAACAAATTGACGTCACaaataaattttagtttttg
aCGTTAACGTTGTAATGTCTTCATTTCTTTTAACTCGCAGCACGGTCATG
TACGTTGGGGGCTGTCGGATATTCTCAAGGTCGGATATTTCCCCTCTAGT
TCATTCATAGGTAAGATGGTCGAAGTTGATAGCCGATACGATGGCATAAA
GAAGCTATATGGACCTGGAAGGATCTTGGATCAAGCAAAATGTAAAATAC
TTTGCACGAAGGATGTAGTTCGCGATGCTTTGGGTAGAGGAAAATGTGAT
GCAGCTTTAGAACCTTCGAATTGGATAACTTCAACAAAGTTTTTCCATAA
GGGTGATACGACGGGCTTTGAGAGAGCGAAGATTGCCGATCCCAAGGTGA
ATCGCAAATCGTCATTGAAACTCGGCTTTCACAAACCACGCTATCGATGT
ACGACGACCGAAGAATTCATTTGGCATAAAAATGCGGAAATACCAGAACG
AGTGGTCCCGGACAATTCCGTCAATATACCGGAATTCTGCCCAAACCTTG
CAGTGGAGAAAACGGTGAAAGATTCGATTTACACCAGTAGTTTTTCCGTC
GATCCTTCTGTACCACGTCCAAAGCCCAAACCGTATGAAGAACGTAAAAA
ATACACGAACGATCTACGTGAAACACATTTCAAGCTTGGAAGCTGGGACG
AGGCAAATTTTACTGAAACACAACATTCGTTAGGTTTCGAGAAGCGATAC
AACGAAGAAGGCCTGTCGAACGGTAGTAACCGCGTTGTTGCTAGTAATCG
CCATTTATCCAAAGTGTTCCGCCAAGGGGACTACAATCGACTTGATCGTA
AATCGATTAATAAGACAATCACCAAAAGAGATTTTCCGACACCTCCGGTG
AGAGATAGACGTGATTTGAAATTCATTCACGAATTCACGGAGCCTTCCTA
TCATCACTCTTCTCATTTCGACCTGGGCTCGGCAAGTTCTGCAGATCCCA
AGAAACTTAGTTCTTCACTTTATCACAAAGATTTCGCCACCAAAGCCCTG
GTTCCTTCTTATGATCGAGATCGACTTTTAAAAGAAGCAACCAGTGGCAC
CCATCATTTAGAGCTCTTCCGGAAAGAATCCAATCCACGGCTTTTCACAA
CAACTaaagaatcaaatttcaaagattACGGAACTCAAAATGTTTTACAG
TTGAAGCAGGAAAGATTCAAATGTTGCTCAGAATTTAAAGACCGTATTGG
CAAGGATCAGCACCAGATATACCATGACCAGCTCAATGCTGGTCGAAATG
AACTACCCAATCAACGCATgctttcaatgacgtcatccaaTTTTCATAGA
CCGCCATTGGTTCACAATAAATATGATTTCGAAATTCCTACCAATAACCA
TTTATCTGGCAACTTTGATTGCATGCGGTCAGCGATTTCCGAAGCCCATG
AGAAGTACACGCCACACCAAAGTTCATCCCTCAAAACTCGACAAGAATGT
CACGACAGACGCCGCGATAACAAATCAACGCACTTCTCCCTCTGGAACGG
CCCGCTAGATAGGAAGATAACCGAACAAGAGTCTCAATTCCGTGATCGAC
CGCCTCTTGATCCGAGCGTTCCACCAGCTGGAAAATATCAACCTGTAGGT
CACAAATATCAGCATATTTTCTCAACATCAAAACCAACCATTCAAAACAT
TCCACAGTCATCCTTTATGATGGATTTCAAGAACCCTTCTTCATATAAAA
CACCATACGATGCTATCAGCAAGAGCAGATCATGTCGCTGGGAAGAACCA
TTAGCGAGCTATTTGTTCCATACTGGAGATGGTCAGTCAAAAGatatACA
GAAAACAACGACTGAACGACATTTTATTTCTCCTATCGAACAGTTGATGA
AACAAAAGAGATTTCTCGGCTCCCGTACACTTTGACCCGACCACCAATAC
TTTCACCATTTTTAGTAGAATAGCTATTAGAATTTTTCTTTGGTAATTTT
ATA
Run BLAST on NCBI

transcript from alignment at sc0000045:461009..466668+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004504 ID=TCONS_00004504|Name=TCONS_00004504|organism=Clytia hemisphaerica|type=transcript|length=5660bp|location=Sequence derived from alignment at sc0000045:461009..466668+ (Clytia hemisphaerica)
TTAATAACCATTAATTATGCCACTGGCATCATATGTGATCGCTCATTCTT
TTTGGTCCTGTGCTAGTAGGAGCACCTCGACCATACCACCCTGCTTTTGA
TCTCTCCCAAATAAAAGCTGAGGAGCAACTAAAGGAAATCAATCATTGCT
TAGTTTATCACATTATCAGCTTACTGATAAAGCCAAATAATattctggcg
tccatcagtaagGTAAATAAAGAGCAATACATTGTAAATAAATGGGCGTG
GCCCGATAATTTATCAACAAATTGACGTCACaaataaattttagtttttg
aCGTTAACGTTGTAATGTCTTCATTTCTTTTAACTCGCAGCACGGTCATG
TACGTTGGGGGCTGTCGGATATTCTCAAGGTCGGATATTTCCCCTCTAGT
TCATTCATAGGTAAGATGGTCGAAGTTGATAGCCGATACGATGGCATAAA
GAAGCTATATGGACCTGGAAGGATCTTGGATCAAGCAAAATGTAAAATAC
TTTGCACGAAGGATGTAGTTCGCGATGCTTTGGGTAGAGGAAAATGTGAT
GCAGCTTTAGAACCTTCGAATTGGATAACTTCAACAAAGTTTTTCCATAA
GGTATGGAAATACTCTGTTCACTAGATTTTGGTACATTAAGTTTGCCGAT
GTGGCGTTAAATATATGCTGTTTATAATGAATTCATGTTGAAAATGTTAA
gctatttttcaatttattttctcCAATTCTTACCTAGTCTGCAAAAGTAG
CATTTACTTCTTCAGCTATACTATGAAGTAGAAGAGAATCAGGCAAAAGT
TAAGAGTAACAGTTTGCTTAGGCTTTGAGTATTTCACGTTTGAACCTGcg
caaagtttgtttttgttttatgagTGAAATTTATGCCACTTCGGAACAGG
TAGCTTGAGACTTAGTTGACTTAGTTGTTTGAGATTTAGTTGAAAATCGG
TCTATGAATTTTATCACTTTAATCTCAATTTTATCATACATATAACCGAT
AATATTTCGCTAATGTTTCAACCTTAGGGTGATACGACGGGCTTTGAGAG
AGCGAAGATTGCCGATCCCAAGGTGAATCGCAAATCGTCATTGAAACTCG
GCTTTCACAAACCACGCTATCGATGTACGACGACCGAAGAATTCATTTGG
CATAAAAATGCGGAAATACCAGAACGAGTGGTCCCGGACAATTCCGTCAA
TATACCGGTAAATACTCTTACAgttgagtctctttaactcgaacctttat
TACTCGAATATCTCCTTTACTccgtgtgtgttcgagttatggagactcca
ctttaTTCAGTTTTGATCAGAATGTACTAAAGGAGCTTCAATTATCTATG
ACCACAAATTTTGATCTCCTTGCTTTTACGAGTGATTTTTAGACTTAATA
TCAAGATCTCCACTTGGTTTCTTTTAAGGAATTCTGCCCAAACCTTGCAG
TGGAGAAAACGGTGAAAGATTCGATTTACACCAGTAGTTTTTCCGTCGAT
CCTTCTGTACCACGTCCAAAGCCCAAACCGTATGAAGAACGTAAAAAATA
CACGAACGATCTACGTGAAACACATTTCAAGCTTGGAAGCTGGGACGAGG
CAAATTTTACTGAAACACAACATTCGTTAGGTTTCGAGAAGCGATACAAC
GAAGAAGGCCTGTCGAACGGTAGTAACCGCGTTGTTGCTAGTAATCGCCA
TTTATCCAAAGTGTTCCGCCAAGGGGACTACAATCGACTTGATCGTAAAT
CGATTAATAAGACAATCACCAAAAGAGATTTTCCGACACCTCCGGTGAGA
GATAGACGTGATTTGAAATTCATTCACGAATTCACGGAGCCTTCCTATCA
TCACTCTTCTCATTTCGACCTGGGCTCGGCAAGTTCTGCAGATCCCAAGA
AACTTAGTTCTTCACTTTATCACAAAGATTTCGCCACCAAAGCCCTGGTT
CCTTCTTATGATCGAGATCGACTTTTAAAAGAAGCAACCAGTGGCACCCA
TCATTTAGAGCTCTTCCGGAAAGAATCCAATCCACGGCTTTTCACAACAA
CTaaagaatcaaatttcaaagattACGGAACTCAAAATGTTTTACAGTTG
AAGCAGGAAAGATTCAAATGTTGCTCAGAATTTAAAGACCGTATTGGCAA
GGATCAGCACCAGATATACCATGACCAGCTCAATGCTGGTCGAAATGAAC
TACCCAATCAACGCATgctttcaatgacgtcatccaaTTTTCATAGACCG
CCATTGGTTCACAATAAATATGATTTCGAAATTCCTACCAATAACCATTT
ATCTGGCAACTTTGATTGCATGCGGTCAGCGATTTCCGAAGCCCATGAGA
AGTACACGCCACACCAAAGTTCATCCCTCAAAACTCGACAAGAATGTCAC
GACAGACGCCGCGATAACAAATCAACGCACTTCTCCCTCTGGAACGGCCC
GCTAGATAGGAAGATAACCGAACAAGAGTCTCAATTCCGTGATCGACCGC
CTCTTGATCCGAGCGTTCCACCAGCTGGAAAATATCAACCTGTAGGTCAC
AAATATCAGCATATTTTCTCAACATCAAAACCAACCATTCAAAACATTCC
ACAGTCATCCTTTATGATGGATTTCAAGAACCCTTCTTCATAGTAAGTGA
ATTATGTTGACCTACGAAAAAGTTTAACGGTTCGTTTGCTCGTCACTAAC
TGCTCTTTAGATACCATCTTCCCACGTGTTTTAGACTCAAAAGCCCTGtg
atatttcaaatttcaagtttATCTTTCATTTTCGCAATCAATGAAGAACA
TCACATAATCAAGGACACAAAGACCACAAAGCTTTACTTTTATGTGGGCC
ACCTGATAAATTTAGGCGCTGGTTTAAGAAGTAACTTAGAGCGTCATGAT
GAGGCTCTATTATGCCGCATATGATGAATTTAATGACTTAAGCAATCATC
TTTGAAATCTTCTGCATATCCTCAACAGCTCTGAGAATGAAAAATACTTC
CGATACTAAAAAAATACTTAGTAGTGAATCTACATCAATAAGCATCCCTG
TATTACAGACCATCTGGCCAAAATTCATCTCAAGTTGGAAAAATAGTTTA
AAAGATTGAAATCTTGGGATTACTTGCTGGATTTTTGAAACCCCAACACT
TTGAAATAGTGTAGAATTCTCCCGTTGGCATTCGGCTTCAACTCATTGAC
TTAGTTTGCACAGAGTCAGAGAGACAGAGGTGTTACATTCAATCATAAAC
CATCATAAATTCATTAGCCTTCTTCGACATGTCAAAACTTTCATATTAAT
TTAATTCATGTTCTCAGTAAAACACCATACGATGCTATCAGCAAGAGCAG
ATCATGTCGCTGGGAAGAACCATTAGCGAGCTATTTGTTCCATACTGGAG
ATGGTCAGTCAAAAGGTATATCCAATTTTTAGATTGTCTCTTTCGAAAAT
AGGCCCGCTAATAATATGAAATGGTTGGTGTATTTACAAATAAGTTCTAC
TATAGGTATTATAATAGGTTTTGTTAGCGTAAAAGGGTTTTATACCCTTG
CAAGGGGTTATTAAgtcaaaaaaatcgaaaatcggcttgagaaaattttt
gaatattctcGGAAACTTAGGAAGATTTTTCGtcgatttttccaaaatat
ttatcCTTTGAGAGAAACATTTACTGACTTACGATTCACTTCTAAGACGT
ACTGTCGTTTAGGACGATATTCAGCTGTCTCGTAGTACAAGGATTTAAAA
tgaatttcctttttcttttcagatatACAGAAAACAACGACTGAACGACA
TTTTATTTCTCCTATTNCAATTGAAGCAGGAAAGATTCAAATGTTGCTCA
GAATTCAAAGACCGTATTGGCAAGGATCAGCACCAGATATACCATGACCA
GCTCAATGCTGGTCGAAATGAACTACCCAATCAACGCATgctttcaatga
cgtcatccaaTTTTCATAGACCGCCATTGGTTCACAATAAATATGATTTC
GAAATTCCAACCAATAACCATTTATCTGGCAACTTTGATTGCATGCGGTC
AGCGATTTCTGAAGCCCATGAGAAGTACACGCCACACCAAAGTTCATCCC
TCAAAACTCGACAAGAATGTCACGACAGACGCCGCGATAACAAATCAACG
CACTTCTCCCTCTGGAACGGCCCGCTAGATAGGAAGATAACCGAACAAGA
GTCTCAATTCCGTGATCGACCGCCTCTTGATCCGAGCGTTCCACCAGCTG
GAAAATATCAACCTGTAGGTCACAAATATCAGCATATTTTCTCAACATCA
AAACCAACCATTCAAAACATTCCACAGTCATCCTTTATGATGGATTTCAA
GAACCCTTCTTCATAGTAAGTGAATTATGTTGACCTACGAAAAAGTTTAA
CGGTTCGTTTGCTCGTCACTAACTGCTCTTTAGATACCATCTTCCCACGT
GTTTTGGACTCAAAAGCCCTGtgatatttcaaatttcaagtttATCTTTC
ATTTTCGCAATCAATGAAGAACATCACATAATCAAGGACACAAAGACCAC
AAAGCTTTACTTTTATGTGGGCCACCTGATAAATTTAGGCGCTGGTTTAA
GAAGTAACTTAGAGCGTCATGATGAGGCTCTATTATGCCGCATATGATGA
ATTTAATGACTTAAGCAATCATCTTTGAAATCTTCTGCATATCCTTAACA
GCTCTGAGAATGAAAAATACTTCCAATACTAAAAAAATACTTAGTAGTGA
ATCTACATCAATAAGCATCCCTGTATCACAGACCATCTGGCCAAAATTCA
TCTCAAGTTGGAAAAATAGTTTAAAAGATTGAAATCTTGGGATTACTTGC
TGGATTTTTGAAACCCCAACACTTTGAAATAGTGTAGAATTCTCCCGTTG
GCATTCGGCTTCAACTCATTGACTTAGTTTGCACAGAGTCAGAGAGACAG
AGGTGTTACATTCAATCATAAACCATCATAAATTCAATTCATTAGCCTTC
TTCGACATGTCAAAACTTTCATATTAATTTAATTCATGTTCTCAGTAAAA
CACCATACGATGCTATCAGCAAGAGCAGATCATGTCGCTGGGAAGAACCA
TTAGCGAGCTATTTGTTCCATACTGGAGATGGTCAGTCAAAAGGTATATC
CAATTTTTAGATTGTCTCTTTCGAAAATAGGCCCGCTAATAATATGAAAT
GGTTGGTGTATTTACAAATAAGTTCTACTATAGGTATTATAATAGGTTTT
GTTAGCGTAAAAGGGTTTTATACCCTTGCAAGGGGTTATTAAgtcaaaaa
aatcgaaaatcggcttgagaaaatttttgaatattctcGGAAACTTAGGA
AGATTTTTCGtcgatttttccaaaatatttatcCTTTGAGAGAAACATTT
ACTGACTTACGATTCACTTCTAAGACGTACTGTCGTTTAGGACGATATTC
AGCTGTCTCGTAGTACAAGGATTTAAAAtgaatttcctttttcttttcag
atatACAGAAAACAACGACTGAACGACATTTTATTTCTCCTATCGAACAG
TTGATGAAACAAAAGAGATTTCTCGGCTCCCGTACACTTTGACCCGACCA
CCAATACTTTCACCATTTTTAGTAGAATAGCTATTAGAATTTTTCTTTGG
TAATTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002534XLOC_002534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004504-exon-sc0000045-1491911889:461009..461609TCONS_00004504-exon-sc0000045-1491911889:461009..461609Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1510915933:461009..461609TCONS_00004504-exon-sc0000045-1510915933:461009..461609Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1575043694:461009..461609TCONS_00004504-exon-sc0000045-1575043694:461009..461609Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1491911889:462036..462215TCONS_00004504-exon-sc0000045-1491911889:462036..462215Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1510915933:462036..462215TCONS_00004504-exon-sc0000045-1510915933:462036..462215Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1575043694:462036..462215TCONS_00004504-exon-sc0000045-1575043694:462036..462215Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1491911889:462437..463650TCONS_00004504-exon-sc0000045-1491911889:462437..463650Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1510915933:462437..463650TCONS_00004504-exon-sc0000045-1510915933:462437..463650Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1575043694:462437..463650TCONS_00004504-exon-sc0000045-1575043694:462437..463650Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1491911889:464326..464423TCONS_00004504-exon-sc0000045-1491911889:464326..464423Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1510915933:464326..464423TCONS_00004504-exon-sc0000045-1510915933:464326..464423Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1575043694:464326..464423TCONS_00004504-exon-sc0000045-1575043694:464326..464423Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1491911889:464781..464807TCONS_00004504-exon-sc0000045-1491911889:464781..464807Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1510915933:464781..464807TCONS_00004504-exon-sc0000045-1510915933:464781..464807Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1575043694:464781..464807TCONS_00004504-exon-sc0000045-1575043694:464781..464807Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1491911889:466536..466668TCONS_00004504-exon-sc0000045-1491911889:466536..466668Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1510915933:466536..466668TCONS_00004504-exon-sc0000045-1510915933:466536..466668Clytia hemisphaericaexon
TCONS_00004504-exon-sc0000045-1575043694:466536..466668TCONS_00004504-exon-sc0000045-1575043694:466536..466668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:461009..466668 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0238106	0.0803977	0.0294788	0.0329696	0.0481648	0.0554894	0.0677262	0.0931411	0.100324	0.0310667	0.090333	0.109817	0.236651	0.279573	0.0877452	0.0732413	0.080742	0.22976	0.26459	0.215533	0.322336	0.170554	0.0126015	0.0620508	27.6668	8.18797	0.0991893	0.0740544	0	0.00490698
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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