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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004519 ID=TCONS_00004519|Name=TCONS_00004519|organism=Clytia hemisphaerica|type=transcript|length=1646bp tcagccaataaataaaaatatgtataaaatcttgaaaactcGATCATCAA ACAAAGTCACCATCAACAAGCACATTCACTAGTATCAATCAGAACTTCTA AAATCATGGATTCTTAACTTCATCTCAAGCAGAGATATGGAGTCTTGACC TGTTTGAGAGAAGATATCAAGTAACCCTTGAGTGGAAAAACAAGACAAGA AAGCATTGGGCTTTATTTACTACAAATCTATCGGTGAAAACCAGGAACAT TTATTTTGGGACATTTAACAAAAGTAGGAAATCACCAATATCCACAAGAA ACAGCAACACcaacataattttcttacggcTGGAAGACACCACAAACAGT CAAATTATTTATTAAAGATTTGAGAAGAGCATGTCAAAAGCAACCAAGAG AAAACACGTGACTAAAGAAATCTTGGAAGATTATTATGTTCCTGAAGATG ATGAAATTATCGTCAAAATAGTAACGGGGCGTGGCAACAATTTGCACGAA GTGATGACACCCAAAGGAGAGCAATACTTAGTCAGTATGCCAACAAAATT CAGAAGAAATGTTTGGGTTAAAAGAGGTGACTTTGTGGTTGTCTCGCCAA TCAAAGAAGGGGTCAAAGTCCAAGGAGAAATTGTTTATATCTTATACGCC AAACAAATCAAGtatttgaaaagtgaaaaaatatgGCCAGAAGCATTTTA TGAGGATTCAGGGAAGGATTCAGCAAAAAATGGAAAAAACGAAGGACCTG CTAGAAATATTGCAGACGAAAATTTAGATGAAAGTGAAGAAAGCGAAAGT GACAATGATGATGATTTATTTGTTAACCCGAATCATCGCCCGATATTCCG AAATGATGACGAATCAGAAGAATCGGATTCTAGCGAAGAAGAAGATTTTG AGGAAAGTGAAGATGATCAGAATGGAAATTCATTACGTCATCACAATGAT GAAAAGACATTCGTTGATGATGAAGGGGAAAGTaatgtgaaagaaaaaat gaaaactgtcAAAATCTGATTTCTAAATTTAATGTATTGATACTGAGAGA GAATTTTGACTTGCAAATGAAACTTAATATCAGTGATGAAGTAATGTGAA AATgtaagttgaaaattgaaagcaaGTGCTATAAAACAGTTGctaagagt actccAAGCTTGACGAGTAATCCAAATGTACTGAACGATACAATTGAGCG ACATTTACTTACACGTCCAATCTCATATAATGATGGGCCCAAGCTGAGAA TTTTGAAGCAAGGGGGTAAAGAATTCTTCGAATGAtaatcaaaagttttc aaagtaTCTCCTTGTGACGACAAATTAATATGATAAACTACCCACAGTGA TACAAATATTGGTTTTTCATTTGTACTTCGTTTGATTCGCCTGTTTTGAA ACTCGACGCTTTCCTTCTGGTTAAGgcagattttaatttttcattttagg gatatataaaaatttttgtatTACAGATATGTTGTCTTGACGATTTATAA TCTTAATTTTTAGTAGTGTTTTGTATTGATTTTGGTCACTATTTTATaca caaatattattttaagaTAGCTTAAAGTTTCTCTTTattgtaaagaaaaa agaaaaacggaAAGAGAGGGAGCAATCACAGAGCgatttgtttttc Run BLAST on NCBI protein sequence of TCONS_00004519-protein >TCONS_00004519-protein ID=TCONS_00004519-protein|Name=TCONS_00004519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MSKATKRKHVTKEILEDYYVPEDDEIIVKIVTGRGNNLHEVMTPKGEQYL VSMPTKFRRNVWVKRGDFVVVSPIKEGVKVQGEIVYILYAKQIKYLKSEK IWPEAFYEDSGKDSAKNGKNEGPARNIADENLDESEESESDNDDDLFVNP NHRPIFRNDDESEESDSSEEEDFEESEDDQNGNSLRHHNDEKTFVDDEGE SNVKEKMKTVKI Run BLAST on NCBI transcript from alignment at sc0000045:614329..617344+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004519 ID=TCONS_00004519|Name=TCONS_00004519|organism=Clytia hemisphaerica|type=transcript|length=3016bp|location=Sequence derived from alignment at sc0000045:614329..617344+ (Clytia hemisphaerica) tcagccaataaataaaaatatgtataaaatcttgaaaactcGATCATCAA
ACAAAGTCACCATCAACAAGCACATTCACTAGTATCAATCAGAACTTCTA
AAATCATGGATTCTTAACTTCATCTCAAGCAGAGATATGGAGTCTTGACC
TGTTTGAGAGAAGATATCAAGTAACCCTTGAGTGGAAAAACAAGACAAGA
AAGCATTGGGCTTTATTTACTACAAATCTATCGGTGAAAACCAGGAACAT
TTATTTTGGGACATTTAACAAAAGTAGGAAATCACCAATATCCACAAGAA
ACAGCAACACcaacataattttcttacggcTGGAAGACACCACAAACAGT
CAAATTATTTATTAAAGATTTGAGAAGAGCATGTCAAAAGCAACCAAGAG
AAAACACGTGACTAAAGAAATCTTGGAAGATTATTATGTTCCTGAAGATG
ATGAAATTATCGTCAAAGTAAGTTCTGTCTCGATAGTTTTCAATAAATAA
ATCATACTGAACAGTGCTGAAATGTCTTCCGTCTCAGGCGAATTTCCTTC
TCAGTGAAGTATATAAAGAAGgtttttccgtctcaaaattctacATAATT
CACCAATATTTAAAATCCCTTTTTTTCTGCCTCAGAcgaaaaaactttct
ttcacCAATGGTTGAAAGGTCTTTCCTAACAAGTTTGATTTTGTTGGATA
ATTTTGCAATTTGCAATTCTGCTTTTTTAGATAGTAACGGGGCGTGGCAA
CAATTTGCACGAAGTGATGACACCCAAAGGAGAGCAATACTTAGTCAGTA
TGCCAACAAAATTCAGAAGAAATGTTTGGGTTAAAAGAGGTTTGtatatt
acaaaaatttttaaacttaaaCTAAGGTTACTGTGTGGTTTTTACTACTC
AAATTTCACGTGTATATTCTAAAAATTCAGCCTTCTCaggattgttctta
tttttatgtCTTTGAGGCTTATTACTCTTATGAAATTATTCAAGTTAAAG
AAAACTTTGTGTTTTGCTCTCTTTACAGGTGACTTTGTGGTTGTCTCGCC
AATCAAAGAAGGGGTCAAAGTCCAAGGAGAAATTGTTTATATCTTATACG
CCAAACAAATCAAGtatttgaaaagtgaaaaaatatggTAAATAAAAGAA
GATGCCTTTTTTATCTCGTCCATGCACTGTCGTTTTTTggttgtatttct
ttttaagttcattcaAGGTCGAGGATACAAATCCTCGAATATTACGCACT
CTGGTTTTCGAGAATTTGTGACCCTGAATGTTGGTAAACTTCGAAgcgtt
ttcttgatttttcccATTTCACCCTTTCAGGCCAGAAGCATTTTATGAGG
ATTCAGGGAAGGATTCAGCAAAGTAAGTCGAAATCTTCAATGTGTCATTT
TCTTCGAAGAGCTTTCTCTCTCTAATAAATATGTAACTTAGAAGCTTCAt
tttgtaataatattttattttatttaatatttaaaacGTTTCGGTCTTCA
TCCAAAGACCATCATCAGTTAAAAAACCTTCTCTCTCTATTATCGCATCT
GATTATATGTCTAATTTGTATCAGTTTTTCTTCAGAAAAATCTTTACTTC
TTCTTCTTTAAGTTGGTCAGGGTTATAATGTTCTACCCTTCTGTATGTCT
TCGTTTACAGAAATGGAAAAAACGAAGGACCTGCTAGAAATATTGCAGAC
GAAAATTTAGATGAAAGTGAAGAAAGCGAAAGTGACAATGATGATGATTT
ATTTGTTAACCCGAATCATCGCCCGATATTCCGAAATGATGACGAATCAG
AAGAATCGGATTCTAGCGAAGAAGAAGATTTTGAGGAAAGTGAAGATGAT
CAGAATGGAAATTCATTACGTCATCACAATGATGAAAAGACATTCGTTGA
TGATGAAGGGGAAAGTaatgtgaaagaaaaaatgaaaactgtcAAAATCT
GATTTCTAAATTTAATGTATTGATACTGAGAGAGAATTTTGACTTGCAAA
TGAAACTTAATATCAGTGATGAAGTAATGTGAAAATgtaagttgaaaatt
gaaagcaaGTGCTATAAAACAGTTGATGAGGTAATtgcgtactcttaggt
tccaaataaacggcccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttccaaccccccccccccg
tttatttggaacctaagagtactccAAGCTTGACGAGTAATCCAAATGTA
CTGAACGATACAATTGAGCGACATTTACTTACACGTCCAATCTCATATAA
TGATGGGCCCAAGCTGAGAATTTTGAAGCAAGGGGGTAAAGAATTCTTCG
AATGAtaatcaaaagttttcaaagtaTCTCCTTGTGACGACAAATTAATA
TGATAAACTACCCACAGTGATACAAATATTGGTTTTTCATTTGTACTTCG
TTTGATTCGCCTGTTTTGAAACTCGACGCTTTCCTTCTGGTTAAGgcaga
ttttaatttttcattttagggatatataaaaatttttgtatTACAGATAT
GTTGTCTTGACGATTTATAATCTTAATTTTTAGTAGTGTTTTGTATTGAT
TTTGGTCACTATTTTATacacaaatattattttaagaTAGCTTAAAGTTT
CTCTTTattgtaaagaaaaaagaaaaacggaAAGAGAGGGAGCAATCACA
GAGCgatttgtttttc Coding sequence (CDS) from alignment at sc0000045:614329..617344+ >TCONS_00004519 ID=TCONS_00004519|Name=TCONS_00004519|organism=Clytia hemisphaerica|type=CDS|length=3195bp|location=Sequence derived from alignment at sc0000045:614329..617344+ (Clytia hemisphaerica) ATGTCAAAAGCAACCAAGAGAAAACACGTGACTAAAGAAATCTTGGAAGA TTATTATGTTCCTGAAGATGATGAAATTATCGTCAAAATAGTAACGGGGC GTGGCAACAATTTGCACGAAGTGATGACACCCAAAGGAGAGCAATACTTA GTCAGTATGCCAACAAAATTCAGAAGAAATGTTTGGGTTAAAAGAGGTGA CTTTGTGGTTGTCTCGCCAATCAAAGAAGGGGTCAAAGTCCAAGGAGAAA TTGTTTATATCTTATACGCCAAACAAATCAAGtatttgaaaagtgaaaaa atatgGCCAGAAGCATTTTATGAGGATTCAGGGAAGGATTCAGCAAAAAA TGGAAAAAACGAAGGACCTGCTAGAAATATTGCAGACGAAAATTTAGATG AAAGTGAAGAAAGCGAAAGTGACAATGATGATGATTTATTTGTTAACCCG AATCATCGCCCGATATTCCGAAATGATGACGAATCAGAAGAATCGGATTC TAGCGAAGAAGAAGATTTTGAGGAAAGTGAAGATGATCAGAATGGAAATT CATTACGTCATCACAATGATGAAAAGACATTCGTTGATGATGAAGGGGAA AGTaatgtgaaagaaaaaatgaaaactgtcAAAATCTGAATGTCAAAAGC AACCAAGAGAAAACACGTGACTAAAGAAATCTTGGAAGATTATTATGTTC CTGAAGATGATGAAATTATCGTCAAAATAGTAACGGGGCGTGGCAACAAT TTGCACGAAGTGATGACACCCAAAGGAGAGCAATACTTAGTCAGTATGCC AACAAAATTCAGAAGAAATGTTTGGGTTAAAAGAGGTGACTTTGTGGTTG TCTCGCCAATCAAAGAAGGGGTCAAAGTCCAAGGAGAAATTGTTTATATC TTATACGCCAAACAAATCAAGtatttgaaaagtgaaaaaatatgGCCAGA AGCATTTTATGAGGATTCAGGGAAGGATTCAGCAAAAAATGGAAAAAACG AAGGACCTGCTAGAAATATTGCAGACGAAAATTTAGATGAAAGTGAAGAA AGCGAAAGTGACAATGATGATGATTTATTTGTTAACCCGAATCATCGCCC GATATTCCGAAATGATGACGAATCAGAAGAATCGGATTCTAGCGAAGAAG AAGATTTTGAGGAAAGTGAAGATGATCAGAATGGAAATTCATTACGTCAT CACAATGATGAAAAGACATTCGTTGATGATGAAGGGGAAAGTaatgtgaa agaaaaaatgaaaactgtcAAAATCTGAATGTCAAAAGCAACCAAGAGAA AACACGTGACTAAAGAAATCTTGGAAGATTATTATGTTCCTGAAGATGAT GAAATTATCGTCAAAATAGTAACGGGGCGTGGCAACAATTTGCACGAAGT GATGACACCCAAAGGAGAGCAATACTTAGTCAGTATGCCAACAAAATTCA GAAGAAATGTTTGGGTTAAAAGAGGTGACTTTGTGGTTGTCTCGCCAATC AAAGAAGGGGTCAAAGTCCAAGGAGAAATTGTTTATATCTTATACGCCAA ACAAATCAAGtatttgaaaagtgaaaaaatatgGCCAGAAGCATTTTATG AGGATTCAGGGAAGGATTCAGCAAAAAATGGAAAAAACGAAGGACCTGCT AGAAATATTGCAGACGAAAATTTAGATGAAAGTGAAGAAAGCGAAAGTGA CAATGATGATGATTTATTTGTTAACCCGAATCATCGCCCGATATTCCGAA ATGATGACGAATCAGAAGAATCGGATTCTAGCGAAGAAGAAGATTTTGAG GAAAGTGAAGATGATCAGAATGGAAATTCATTACGTCATCACAATGATGA AAAGACATTCGTTGATGATGAAGGGGAAAGTaatgtgaaagaaaaaatga aaactgtcAAAATCTGAATGTCAAAAGCAACCAAGAGAAAACACGTGACT AAAGAAATCTTGGAAGATTATTATGTTCCTGAAGATGATGAAATTATCGT CAAAATAGTAACGGGGCGTGGCAACAATTTGCACGAAGTGATGACACCCA AAGGAGAGCAATACTTAGTCAGTATGCCAACAAAATTCAGAAGAAATGTT TGGGTTAAAAGAGGTGACTTTGTGGTTGTCTCGCCAATCAAAGAAGGGGT CAAAGTCCAAGGAGAAATTGTTTATATCTTATACGCCAAACAAATCAAGt atttgaaaagtgaaaaaatatgGCCAGAAGCATTTTATGAGGATTCAGGG AAGGATTCAGCAAAAAATGGAAAAAACGAAGGACCTGCTAGAAATATTGC AGACGAAAATTTAGATGAAAGTGAAGAAAGCGAAAGTGACAATGATGATG ATTTATTTGTTAACCCGAATCATCGCCCGATATTCCGAAATGATGACGAA TCAGAAGAATCGGATTCTAGCGAAGAAGAAGATTTTGAGGAAAGTGAAGA TGATCAGAATGGAAATTCATTACGTCATCACAATGATGAAAAGACATTCG TTGATGATGAAGGGGAAAGTaatgtgaaagaaaaaatgaaaactgtcAAA ATCTGAATGTCAAAAGCAACCAAGAGAAAACACGTGACTAAAGAAATCTT GGAAGATTATTATGTTCCTGAAGATGATGAAATTATCGTCAAAATAGTAA CGGGGCGTGGCAACAATTTGCACGAAGTGATGACACCCAAAGGAGAGCAA TACTTAGTCAGTATGCCAACAAAATTCAGAAGAAATGTTTGGGTTAAAAG AGGTGACTTTGTGGTTGTCTCGCCAATCAAAGAAGGGGTCAAAGTCCAAG GAGAAATTGTTTATATCTTATACGCCAAACAAATCAAGtatttgaaaagt gaaaaaatatgGCCAGAAGCATTTTATGAGGATTCAGGGAAGGATTCAGC AAAAAATGGAAAAAACGAAGGACCTGCTAGAAATATTGCAGACGAAAATT TAGATGAAAGTGAAGAAAGCGAAAGTGACAATGATGATGATTTATTTGTT AACCCGAATCATCGCCCGATATTCCGAAATGATGACGAATCAGAAGAATC GGATTCTAGCGAAGAAGAAGATTTTGAGGAAAGTGAAGATGATCAGAATG GAAATTCATTACGTCATCACAATGATGAAAAGACATTCGTTGATGATGAA GGGGAAAGTaatgtgaaagaaaaaatgaaaactgtcAAAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004519-exon-sc0000045-1491911889:614329..614795 | TCONS_00004519-exon-sc0000045-1491911889:614329..614795 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1510915933:614329..614795 | TCONS_00004519-exon-sc0000045-1510915933:614329..614795 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1575043694:614329..614795 | TCONS_00004519-exon-sc0000045-1575043694:614329..614795 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1491911889:615059..615167 | TCONS_00004519-exon-sc0000045-1491911889:615059..615167 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1510915933:615059..615167 | TCONS_00004519-exon-sc0000045-1510915933:615059..615167 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1575043694:615059..615167 | TCONS_00004519-exon-sc0000045-1575043694:615059..615167 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1491911889:615357..615465 | TCONS_00004519-exon-sc0000045-1491911889:615357..615465 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1510915933:615357..615465 | TCONS_00004519-exon-sc0000045-1510915933:615357..615465 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1575043694:615357..615465 | TCONS_00004519-exon-sc0000045-1575043694:615357..615465 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1491911889:615659..615700 | TCONS_00004519-exon-sc0000045-1491911889:615659..615700 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1510915933:615659..615700 | TCONS_00004519-exon-sc0000045-1510915933:615659..615700 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1575043694:615659..615700 | TCONS_00004519-exon-sc0000045-1575043694:615659..615700 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1491911889:615989..616403 | TCONS_00004519-exon-sc0000045-1491911889:615989..616403 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1510915933:615989..616403 | TCONS_00004519-exon-sc0000045-1510915933:615989..616403 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1575043694:615989..616403 | TCONS_00004519-exon-sc0000045-1575043694:615989..616403 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1491911889:616841..617344 | TCONS_00004519-exon-sc0000045-1491911889:616841..617344 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1510915933:616841..617344 | TCONS_00004519-exon-sc0000045-1510915933:616841..617344 | Clytia hemisphaerica | exon |
TCONS_00004519-exon-sc0000045-1575043694:616841..617344 | TCONS_00004519-exon-sc0000045-1575043694:616841..617344 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000045 | supercontig | sc0000045:614329..617344 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006413 | translational initiation |
Vocabulary: Molecular Function
Term | Definition |
GO:0003743 | translation initiation factor activity |
GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006413 |
translational initiation |
molecular_function |
GO:0003723 |
RNA binding |
molecular_function |
GO:0003743 |
translation initiation factor activity |
Blast
BLAST of TCONS_00004519 vs. Swiss-Prot (Human)
Match: EIF1A (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.416e-37 Identity = 60/121 (49.59%), Postives = 91/121 (75.21%), Query Frame = 3
Query: 381 MSKATKRKHVTKEILEDYYVPEDDEIIVKIVTGRGNNLHEVMTPKGEQYLVSMPTKFRRNVWVKRGDFVVVSPIKEGVKVQGEIVYILYAKQIKYLKSEKIWPEAFYEDSGKDSAKNGKNE 743
MS+ATKRKHV KE+L ++ VP D + IV+++ GNNLHEV T +G+++LVSMP+K+R+N+W+KRGDF++V PI+EG KV+ EI ++L ++ L+ E WPEAF E + K + +N + +
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQ 121
The following BLAST results are available for this feature:
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