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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004748 ID=TCONS_00004748|Name=TCONS_00004748|organism=Clytia hemisphaerica|type=transcript|length=2597bp
ATTTGCAATCATAAGACAAATCAACCTCGCAAGAGATACGAgagacaaaa
aaataaaaagagttttataatatttttgtttgagAAATTATTAGAGAAGT
ATAATAGAAGAGAACGAAAgttgaattttgttttcatgaAACTTTAATAT
CGACGTTAGAAGAACTGAACTGGGAAATTTCTTCTCTTGGCTCTGTAAag
agaagaaaataaatttttgataaaacatccagaagaaaaaaAGATTTTGG
ATATAGAGGATAACAAAACGATATAACATCAAACGAGAAGAACAAAGCGA
GAGGAAAGACAACCTAAATAGTCCACAACGTAAGGGTTTTACCACAAACA
TATCACAACAGTCAACAATGTACCAGCAACAACAAATTATGATGAACAAT
TTCGGTGACCAATTAGATTATTATGGTAGCGATGGCGAGTCTGTGATTTC
GGACACGATGGTCAATGGACAAGTCAGTCCATCAAGGAGTGATTGGTCCC
CAGTCCCCCAATGCAACACGTGGAACGATTATCCTGATCAACAAGACTTT
TCAAATATCTTTACAGATGCTCTAACAAATGGAACCAATAAcaaaatcaa
tttcaacaacaataCAAACACAAATCAACAATTTGAAATCAACACAGACA
CACCCACTTGTTCCCAACCCCTTTACCCAACATATGGCAACATCAACAAT
GCTCCAAACCTAAATAAAGAAAGCATGCCAGCCTCACCGTTAACTTACGA
AACAATGCAAAACCCAATTTATCCGATGAATAACATTCAACAACATCCAT
GTTTTCAAACACCTATCTACAACCGTGAATACTCAACAGATCTCAACAAC
TATCTCCCTGAAAATATGTTGTTGAACAACACAAGCAACATGAATGACGA
CTTCAACAACGTTAGGATGGACGACCTGCTCAACACTGGCTACTCCACCA
ACAACCCATTTAACAACAAAGAAATGAAAGATACACCCATCTTCAGTATG
AACCAATCAACGATGAACAACAAACGACACGAGCTTTTCCTTCAAATgat
caaacaacaacaaaacaaagttTCAATGGAATCCCTGTCCATCCAATCAT
CGCCAGCACCTCTCACTCCTTCATCTGATTGGGACAACATTCCTTCACCT
GTGTCTGAATACGACATGAAACCTCTCCACGATACTATCAACAAACCTAC
CAAACCGTCAACAACAGCCCTCAAGCCTAAAGTTAAGAAACCAAGAAAAT
CGTACGCGGCCAAGACTGGTAAACCAAGACTTTTCCGCTTCTTGAAAGAC
ATCTTGGAAGATCCAAATCAATACAAATGCATTGAATGGGTCAACAAGTC
GACTGGTACCTTCAAATTCCTTGATTCATCAGAAGTAGCGCGTCTGTGGG
GACACCGCAAGAACAAACCCGCCATGAAATACGAAAACTTCGCAAGATCA
CTTCGAACCTACATCGCCAAAGGGATCTTGAAGAAGCCACGAAACAAGTT
GGTGTATTGTTTTGCTCAACCAGACACTGAGTAAATCAATACAAAACCAA
CTCCTANTTTATGGATTGTATCCAACTAATAATGTTTTGAGTAAACGACA
AAGGAGAGAGGATGAAGCTCtagttttaaagttttagtATTCACTAtgtg
gaaaaaaattattatactaTTATCTTAAAGtatcttaaaaatatatattc
tagGGCTAATATCATTGTAAGGGGTTAATAATTTGGGCTGGAGTTAAGGG
TGGGAAAGGGCGCAAAGGGGAAGGCTAGAGTAAGGGGTGTTGATTTTTTA
TATGTAATGTAAAATAGTGTGAATAGAGCGAGAGTCTGCAGTCGTCGTAA
AAGCGAAGTATAAAATTTCCTTCAAATGATAGCTTTCCAAatttactttg
aaaattttatggaGATGATGGACGCCTaataaagcttttaagatttgTCT
GTCTGGCCACGTCAGATCGAACGAGAGAAGGAGAGGAGAGAGTGAGCGAG
AGAGCAAGGAGAGTCTTTGTGGGGGAGAGTGTAGTATTTAAAGTATTTAA
TTATCATAGCAGCGATTAAATGGTTTTTTTAATTGCTATTTAGTCAATAT
CATAAATAACATTTTAGATAGCTAACGAGTGCCAGCTTAATTGCCTTTTG
ACGCGTATTGGATGTTTTTTTATTGTCTAATTAATAAATCTACCTTTGAT
TGGTTAAAGGCATTACAAAAATAACGCCAAATTCTTTTTCGCTTAgacaa
caaaaaataaaatggtacCAGACTGTAACAAGAGATACCTCTCatcttgg
tgttttttttttctacgtAGCGTTGgaataacaaattttttgtaaaagaa
aacaaatgaaattgaTCCCAAGTGTTAGCAATTTGATTCGGCTCGGATAT
CCTTTAACTGACGTCTATTGACATTAGTAAAAAACATCATTTTACTGACT
TTGCTTAACCAAAAtgtaaatattattttttttgattagTATTGTTAAAA
CTTTGTAATCATcagtatttaaaaatttgaaaatcttaaaaaacgaagat
gttcttatattaagaatgttttcacaaaaaaaagttttaaaaataaa Run BLAST on NCBI protein sequence of TCONS_00004748-protein >TCONS_00004748-protein ID=TCONS_00004748-protein|Name=TCONS_00004748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MYQQQQIMMNNFGDQLDYYGSDGESVISDTMVNGQVSPSRSDWSPVPQCN
TWNDYPDQQDFSNIFTDALTNGTNNKINFNNNTNTNQQFEINTDTPTCSQ
PLYPTYGNINNAPNLNKESMPASPLTYETMQNPIYPMNNIQQHPCFQTPI
YNREYSTDLNNYLPENMLLNNTSNMNDDFNNVRMDDLLNTGYSTNNPFNN
KEMKDTPIFSMNQSTMNNKRHELFLQMIKQQQNKVSMESLSIQSSPAPLT
PSSDWDNIPSPVSEYDMKPLHDTINKPTKPSTTALKPKVKKPRKSYAAKT
GKPRLFRFLKDILEDPNQYKCIEWVNKSTGTFKFLDSSEVARLWGHRKNK
PAMKYENFARSLRTYIAKGILKKPRNKLVYCFAQPDTE Run BLAST on NCBI transcript from alignment at sc0000048:235062..239027+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004748 ID=TCONS_00004748|Name=TCONS_00004748|organism=Clytia hemisphaerica|type=transcript|length=3966bp|location=Sequence derived from alignment at sc0000048:235062..239027+ (Clytia hemisphaerica)
ATTTGCAATCATAAGACAAATCAACCTCGCAAGAGATACGAgagacaaaa
aaataaaaagagttttataatatttttgtttgagAAATTATTAGAGAAGT
ATAATAGAAGAGAACGAAAgttgaattttgttttcatgaAACTTTAATAT
CGACGTTAGAAGAACTGAACTGGGAAATTTCTTCTCTTGGCTCTGTAAag
agaagaaaataaatttttgataaaacatccagaagaaaaaagtaagtaca
aaagtttgttttttttgcatcAAACTTCCAATTGAACTTTTTTATATTAG
AGTCCTGGTTTTATTATATTACTGTATTATATATAGATTAACATAAATTT
CCTTGAGAAATTATGAAAAGGCTGAAAATACCACCGATGTTATAATcatg
ttttcataattttctcttctttttttacaCTATAATACTCCAGTCACTCT
TCGACTCAAATGCTTGACTTGACGTTTTTATGAATGAAATCATTCTTTCG
TGGCTACAGCAAAGGAAATCTACATAACTACTGAAcaatattcgaaaaaa
gaaaattgaattttgtcTTGAAACTGCTTTAGTAATCGCTTCTatatttt
taaccatttttttaCCTAAATCTTAGAGATTTTGGATATAGAGGATAACA
AAACGATATAACATCAAACGAGAAGAACAAAGCGAGAGGAAAGACAACCT
AAATAGTCCACAACGTAAGGGTTTTACCACAAACATATCACAACAGTCAA
CAATGTACCAGCAACAACAAATTATGATGAACAATTTCGGTGACCAATTA
GATTATTATGGTAGCGATGGCGAGTCTGTGATTTCGGACACGATGGTCAA
TGGACAAGTCAGTCCATCAAGGAGTGATTGGTCCCCAGTCCCCCAATGCA
ACACGTGGAACGATTATCCTGATCAACAAGACTTTTCAAATATCTTTACA
GGTAAAGAGAAAATGATCACACCCTGTCTCAGTGTCCACTTCAAAATTTC
TTACTTcgtaaacacccccttctcacagacccgggaAGATTGACATTCCC
ATGTTTTTCATGACTGGGgatttcatttattttgttttcaagtcataaaa
atcagtggggatgggaaaaacaGCATTACATTTTGCAGtaggaaggggtc
ccagtgtatctgtgagaaaggggtgttcgTAGGGATAGAGTGTCAATGAA
TTAAATGGCAATTTACTGTCAAAGTTTAATTTATCCTActattttcaatc
aattttcgCTATAATATTTATCTGCTCAGTCACTGTAAATATTTCACGAT
TATTTTCGGAGGGGTAATTTTCTAATCGAATTTGAAGAAGGCATCACGCC
AATTTAAAGACATTGATTTTTAGTTGTTGGTGCTTTCAAAGATCATATAT
TTGAATCACAACTAAGCTTCTACATCCGCTATGcattaaaaatacaataa
aaacacAAGTATACAGTAATGTCATTGTCATTAAACTTGAGTTAGGAGAA
TTAAAATAGGCCTGTCGGAACATAAAAAAGAACGATTTTTGTTTCATCGC
AAACATCCTGATGTCGGCTAGTTGTTACAATTTTTCGGATGTGCCTACCA
GAACACACAAAAGGAAAACGCCAGGCTAGaatgacaaaaatttcaaaaaa
agaaatatttttcttaatctaAGAATTTCGATGtgagaaaaaattcaatg
atACTTGAGACACACATAGACATGAGATAAGTATTGTTTTTGCATTTCAC
ATTTGTTGGAATAGGAGGAAAAAAGGTCttgaaaaagtgtttttttttac
gAAAGCATTTTAGGTGTTTAATACGACACCTTAAAGTGTCCCAAATAGTT
GGATTTAGATATGAACGTTAAATGAACCTCCAAAAAACATGACATCACTG
AAAAGACCTTTGTAcccttttgttttcttttatagATGCTCTAACAAATG
GAACCAATAAcaaaatcaatttcaacaacaataCAAACACAAATCAACAA
TTTGAAATCAACACAGACACACCCACTTGTTCCCAACCCCTTTACCCAAC
ATATGGCAACATCAACAATGCTCCAAACCTAAATAAAGAAAGCATGCCAG
CCTCACCGTTAACTTACGAAACAATGCAAAACCCAATTTATCCGATGAAT
AACATTCAACAACATCCATGTTTTCAAACACCTATCTACAACCGTGAATA
CTCAACAGATCTCAACAACTATCTCCCTGAAAATATGTTGTTGAACAACA
CAAGCAACATGAATGACGACTTCAACAACGTTAGGATGGACGACCTGCTC
AACACTGGCTACTCCACCAACAACCCATTTAACAACAAAGAAATGAAAGA
TACACCCATCTTCAGTATGAACCAATCAACGATGAACAACAAACGACACG
AGCTTTTCCTTCAAATgatcaaacaacaacaaaacaaagttTCAATGGAA
TCCCTGTCCATCCAATCATCGCCAGCACCTCTCACTCCTTCATCTGATTG
GGACAACATTCCTTCACCTGTGTCTGAATACGACATGAAACCTCTCCACG
ATACTATCAACAAACCTACCAAACCGTCAACAACAGCCCTCAAGCCTAAA
GTTAAGAAACCAAGAAAATCGTACGCGGCCAAGACTGGTAAACCAAGACT
TTTCCGCTTCTTGAAAGACATCTTGGAAGATCCAAATCAATACAAATGCA
TTGAATGGGTCAACAAGTCGACTGGTACCTTCAAATTCCTTGATTCATCA
GAAGTAGCGCGTCTGTGGGGACACCGCAAGAACAAACCCGCCATGAAATA
CGAAAACTTCGCAAGATCACTTCGAACCTACATCGCCAAAGGGATCTTGA
AGAAGCCACGAAACAAGTTGGTGTATTGTTTTGCTCAACCAGACACTGAG
TAAATCAATACAAAACCAACTCCTANTTTATGGATTGTATCCAACTAATA
ATGTTTTGAGTAAACGACAAAGGAGAGAGGATGAAGCTCtagttttaaag
ttttagtATTCACTAtgtggaaaaaaattattatactaTTATCTTAAAGt
atcttaaaaatatatattctagGGCTAATATCATTGTAAGGGGTTAATAA
TTTGGGCTGGAGTTAAGGGTGGGAAAGGGCGCAAAGGGGAAGGCTAGAGT
AAGGGGTGTTGATTTTTTATATGTAATGTAAAATAGTGTGAATAGAGCGA
GAGTCTGCAGTCGTCGTAAAAGCGAAGTATAAAATTTCCTTCAAATGATA
GCTTTCCAAatttactttgaaaattttatggaGATGATGGACGCCTaata
aagcttttaagatttgTCTGTCTGGCCACGTCAGATCGAACGAGAGAAGG
AGAGGAGAGAGTGAGCGAGAGAGCAAGGAGAGTCTTTGTGGGGGAGAGTG
TAGTATTTAAAGTATTTAATTATCATAGCAGCGATTAAATGGTTTTTTTA
ATTGCTATTTAGTCAATATCATAAATAACATTTTAGATAGCTAACGAGTG
CCAGCTTAATTGCCTTTTGACGCGTATTGGATGTTTTTTTATTGTCTAAT
TAATAAATCTACCTTTGATTGGTTAAAGGCATTACAAAAATAACGCCAAA
TTCTTTTTCGCTTAgacaacaaaaaataaaatggtacCAGACTGTAACAA
GAGATACCTCTCatcttggtgttttttttttctacgtAGCGTTGgaataa
caaattttttgtaaaagaaaacaaatgaaattgaTCCCAAGTGTTAGCAA
TTTGATTCGGCTCGGATATCCTTTAACTGACGTCTATTGACATTAGTAAA
AAACATCATTTTACTGACTTTGCTTAACCAAAAtgtaaatattatttttt
ttgattagTATTGTTAAAACTTTGTAATCATcagtatttaaaaatttgaa
aatcttaaaaaacgaagatgttcttatattaagaatgttttcacaaaaaa
aagttttaaaaataaa Coding sequence (CDS) from alignment at sc0000048:235062..239027+ >TCONS_00004748 ID=TCONS_00004748|Name=TCONS_00004748|organism=Clytia hemisphaerica|type=CDS|length=2334bp|location=Sequence derived from alignment at sc0000048:235062..239027+ (Clytia hemisphaerica)
ATGTACCAGCAACAACAAATTATGATGAACAATTTCGGTGACCAATTAGA
TTATTATGGTAGCGATGGCGAGTCTGTGATTTCGGACACGATGGTCAATG
GACAAGTCAGTCCATCAAGGAGTGATTGGTCCCCAGTCCCCCAATGCAAC
ACGTGGAACGATTATCCTGATCAACAAGACTTTTCAAATATCTTTACAGA
TGCTCTAACAAATGGAACCAATAAcaaaatcaatttcaacaacaataCAA
ACACAAATCAACAATTTGAAATCAACACAGACACACCCACTTGTTCCCAA
CCCCTTTACCCAACATATGGCAACATCAACAATGCTCCAAACCTAAATAA
AGAAAGCATGCCAGCCTCACCGTTAACTTACGAAACAATGCAAAACCCAA
TTTATCCGATGAATAACATTCAACAACATCCATGTTTTCAAACACCTATC
TACAACCGTGAATACTCAACAGATCTCAACAACTATCTCCCTGAAAATAT
GTTGTTGAACAACACAAGCAACATGAATGACGACTTCAACAACGTTAGGA
TGGACGACCTGCTCAACACTGGCTACTCCACCAACAACCCATTTAACAAC
AAAGAAATGAAAGATACACCCATCTTCAGTATGAACCAATCAACGATGAA
CAACAAACGACACGAGCTTTTCCTTCAAATgatcaaacaacaacaaaaca
aagttTCAATGGAATCCCTGTCCATCCAATCATCGCCAGCACCTCTCACT
CCTTCATCTGATTGGGACAACATTCCTTCACCTGTGTCTGAATACGACAT
GAAACCTCTCCACGATACTATCAACAAACCTACCAAACCGTCAACAACAG
CCCTCAAGCCTAAAGTTAAGAAACCAAGAAAATCGTACGCGGCCAAGACT
GGTAAACCAAGACTTTTCCGCTTCTTGAAAGACATCTTGGAAGATCCAAA
TCAATACAAATGCATTGAATGGGTCAACAAGTCGACTGGTACCTTCAAAT
TCCTTGATTCATCAGAAGTAGCGCGTCTGTGGGGACACCGCAAGAACAAA
CCCGCCATGAAATACGAAAACTTCGCAAGATCACTTCGAACCTACATCGC
CAAAGGGATCTTGAAGAAGCCACGAAACAAGTTGGTGTATTGTTTTGCTC
AACCAGACACTGAGTAAATGTACCAGCAACAACAAATTATGATGAACAAT
TTCGGTGACCAATTAGATTATTATGGTAGCGATGGCGAGTCTGTGATTTC
GGACACGATGGTCAATGGACAAGTCAGTCCATCAAGGAGTGATTGGTCCC
CAGTCCCCCAATGCAACACGTGGAACGATTATCCTGATCAACAAGACTTT
TCAAATATCTTTACAGATGCTCTAACAAATGGAACCAATAAcaaaatcaa
tttcaacaacaataCAAACACAAATCAACAATTTGAAATCAACACAGACA
CACCCACTTGTTCCCAACCCCTTTACCCAACATATGGCAACATCAACAAT
GCTCCAAACCTAAATAAAGAAAGCATGCCAGCCTCACCGTTAACTTACGA
AACAATGCAAAACCCAATTTATCCGATGAATAACATTCAACAACATCCAT
GTTTTCAAACACCTATCTACAACCGTGAATACTCAACAGATCTCAACAAC
TATCTCCCTGAAAATATGTTGTTGAACAACACAAGCAACATGAATGACGA
CTTCAACAACGTTAGGATGGACGACCTGCTCAACACTGGCTACTCCACCA
ACAACCCATTTAACAACAAAGAAATGAAAGATACACCCATCTTCAGTATG
AACCAATCAACGATGAACAACAAACGACACGAGCTTTTCCTTCAAATgat
caaacaacaacaaaacaaagttTCAATGGAATCCCTGTCCATCCAATCAT
CGCCAGCACCTCTCACTCCTTCATCTGATTGGGACAACATTCCTTCACCT
GTGTCTGAATACGACATGAAACCTCTCCACGATACTATCAACAAACCTAC
CAAACCGTCAACAACAGCCCTCAAGCCTAAAGTTAAGAAACCAAGAAAAT
CGTACGCGGCCAAGACTGGTAAACCAAGACTTTTCCGCTTCTTGAAAGAC
ATCTTGGAAGATCCAAATCAATACAAATGCATTGAATGGGTCAACAAGTC
GACTGGTACCTTCAAATTCCTTGATTCATCAGAAGTAGCGCGTCTGTGGG
GACACCGCAAGAACAAACCCGCCATGAAATACGAAAACTTCGCAAGATCA
CTTCGAACCTACATCGCCAAAGGGATCTTGAAGAAGCCACGAAACAAGTT
GGTGTATTGTTTTGCTCAACCAGACACTGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004748-exon-sc0000048-1491911889:235062..235302 | TCONS_00004748-exon-sc0000048-1491911889:235062..235302 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1510915933:235062..235302 | TCONS_00004748-exon-sc0000048-1510915933:235062..235302 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1575043694:235062..235302 | TCONS_00004748-exon-sc0000048-1575043694:235062..235302 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1491911889:235688..236012 | TCONS_00004748-exon-sc0000048-1491911889:235688..236012 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1510915933:235688..236012 | TCONS_00004748-exon-sc0000048-1510915933:235688..236012 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1575043694:235688..236012 | TCONS_00004748-exon-sc0000048-1575043694:235688..236012 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1491911889:236997..239027 | TCONS_00004748-exon-sc0000048-1491911889:236997..239027 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1510915933:236997..239027 | TCONS_00004748-exon-sc0000048-1510915933:236997..239027 | Clytia hemisphaerica | exon |
| TCONS_00004748-exon-sc0000048-1575043694:236997..239027 | TCONS_00004748-exon-sc0000048-1575043694:236997..239027 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:235062..239027 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00004748 vs. Swiss-Prot (Human)
Match: SPDEF (SAM pointed domain-containing Ets transcription factor OS=Homo sapiens GN=SPDEF PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 4.508e-20 Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 2
Query: 1265 TGKP-RLFRFLKDILEDPNQY-KCIEWVNKSTGTFKFLDSSEVARLWGHRKNKPAMKYENFARSLRTYIAKGILKKP--RNKLVYCFAQP 1522
+G+P L++FLK++L P+ Y + I W+NK G FK DS++VARLWG RKN+PAM Y+ +RS+R Y KGI++KP +LVY F P
Sbjct: 245 SGQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHP 334
The following BLAST results are available for this feature:
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