TCONS_00004859 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004859
Unique Name	TCONS_00004859
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	938

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000049:271311..274278+
coding sequence from alignment at sc0000049:271311..274278+

transcript sequence

>TCONS_00004859 ID=TCONS_00004859|Name=TCONS_00004859|organism=Clytia hemisphaerica|type=transcript|length=938bp
TTTCAGGAAGCAAAAGTCCCGGAAAACCACAAAAAAGAGAATCAAAAACG
CCCATTATCATCGTACCGTCGGGAACAACTGCCCTTATATCACTTCTCAA
TGCCAAAGACATACTACAAGACTATAGGTTTGTGAGCGTTGAAGAGAAAA
AGAGACTGGGCACGATAAAAGAGAACGAAGTGATGGTACAACGTAAAAAA
GACACACTCATCAACAACACAATGCAAACGGTCACCATTCCATTCCGTAT
CGTCGATCAACCCCTCAAACTACAACCAAATGAATGGAATCGTGTAGCAG
CAGTTTTCGTACAAGGACCAACCTGGCAATTCAAAGGATGGCCTCATTTA
CTGCCTGATGGATCGCCTGTCGACATCCTCACCAAAATCAAAGGCTTTCA
CGTTCGATATGACGATATGAAGACTGACGCCAACGTCATGAAATGGGACG
TCATGGTTTTAACGTTCAACCGCAACAGACGACACATGGATCGAGCTACT
GTTCTCAAGTTTTGGGAAGCACTCGAAAAATTCTTAGCGAAGAATAAACC
GAACTTGAGGTTTTAAAGATTTGGTGGTTTTGAGTGGATTCTGAGTGAAA
TTGTATTGACGCTAGCAGCTTGGTTAGagcgtaatttttttttttgtaaa
atagaaaaagtattttaagcTGTTTATTATATTAACAATATAGCAGTCTT
TTAAATGAGGTGTTTATCTTACAGCTTCTTGAATAGATTTTCGTCTCAAT
AAATAGCTTTAAATAGACCATAAAAAAATAGGTTATTCTGAGCNGTCTCA
ATAAATAGCTTTAAATAGACCATGAAAAAATaggttattctgagcttatt
tttcaataaatttacaGGCTGTATCTAATTTTGCTTTTGTAGTGTGGTAA
TTATTATAAAAGTGTCattataattttttaagtttaga

Run BLAST on NCBI

protein sequence of TCONS_00004859-protein

>TCONS_00004859-protein ID=TCONS_00004859-protein|Name=TCONS_00004859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
SGSKSPGKPQKRESKTPIIIVPSGTTALISLLNAKDILQDYRFVSVEEKK
RLGTIKENEVMVQRKKDTLINNTMQTVTIPFRIVDQPLKLQPNEWNRVAA
VFVQGPTWQFKGWPHLLPDGSPVDILTKIKGFHVRYDDMKTDANVMKWDV
MVLTFNRNRRHMDRATVLKFWEALEKFLAKNKPNLRF

Run BLAST on NCBI

transcript from alignment at sc0000049:271311..274278+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004859 ID=TCONS_00004859|Name=TCONS_00004859|organism=Clytia hemisphaerica|type=transcript|length=2968bp|location=Sequence derived from alignment at sc0000049:271311..274278+ (Clytia hemisphaerica)
TTTCAGGAAGCAAAAGTCCCGGAAAACCACAAAAAAGAGGTGGAGCGCTT
TACTTttttatgtcattttttaaTACCACTTTTGTATTCAATATCTATCA
TCTTGACAATTTagcttttattttgcttttcaATCTATCGCATTGAAGGG
TATATTAAAGAGGTTTGAAAGTGTATCTACTCTTTTAGAATCAAAAACGC
CCATTATCATCGTACCGTCGGGAACAACTGCCCTTATATCACTTCTCAAT
GCCAAAGACATACTACAAGACTATAGGTATGTAGGGATAATTTTTTTCCC
ATTGCTGTTAAACCCTTTACAGGGACCACCCAATCTCAAATACCCTCAGA
GGAACAACCAAGAATATTGGAAATAAACTTAATGTAACTTACATTTGGTG
TCTTTAggcaaaactttataaatttatGGCATCAATTAGGTTTCTGTAAT
TGTGAACGACTTTTATCATGGTGCCTGAAAGTcgtaaaattgtaaatttt
cacTATTGAAAACAAAGATTCGAAGTGTCATGGGGATGGGcacaagttaa
aaaaaaaacaagaccaGTTTAGCGGAAGACATATAAACCAGACGATGctg
aatacacctttttgatcgtagtcgcgcggtcaggcgcgtgtcGCTTAGTT
ATTTAATTATCGCTAgccgatccaatccttttttgacacatttttctatt
gtctatagtgCGAAAAatggactgggacggttttagtggaaTAAATCGGA
CNTCTATAGTGCGAAAAATGGACtgagacggttttagtgggataaatcgg
acaaaaaaatgcccgcgcggcaattggcgactacggtcgaaaaggtgtat
agacAATGCACAACTTTCTCCGTTTCAGGTTTGTGAGCGTTGAAGAGAAA
AAGAGACTGGGCACGATAAAAGAGAACGAAGTGATGGTACAACGTAAAAA
AGACACACTCATCAACAACACAATGCAAACGGTCACCATTCCATTCCGTA
TCGTCGATCAACCCCTCAAACTACAACCAAATGAATGGTAAGCTAATTAT
GGACGTTCCCTATGTAATTCCTGTGGTACTTTTATTATCCCCATGCTATT
TTGTGCTCAGAAGGACCTCTTAAGTTAAACGATACCTAAGTTATTCcttt
aggaaaaaaataaatgatctcCATGGTTTTGTTCTCAAATGGATAAGTCG
TTTTCCCAATCATTTTCTAATCTATCTTGTCACCTAAAAACTAAAAGGGT
TTATGCTGGCAACAATCCTTCAAATTCCACACCATAAAGTGTAAAATTAG
ATGGAGTGCATGTTTTTACATCGATATTTACTACTAAAGTcctaagaaaa
aaaatcagacaTTAACCTAATTTCGTCACTTCTCTCATCCAGGAATCGTG
TAGCAGCAGTTTTCGTACAAGGACCAACCTGGCAATTCAAAGGATGGCCT
CATTTACTGCCTGATGGATCGCCTGTCGACATCCTCACCAAAAGTATGAA
ACCAATCTCCTCATTGGTTATCTAGACTACCTGTGCAATAtctattttaa
tatatttttaataACATCAGATTTTATTTCAACTGAAGATTATTTGAGGG
AGACATGAAAATTTCAGTATTGAAAGAAAGAATAATTTCACTGCCTCATT
ATAATAAAAGCAGAAATATTTTGCTTTCTCAATCTGTCTCAATTCATTAC
GATTCTTTTTATGTTGATATAGTTaaagaaatgaattttcttGGTAATTG
TCAAATTTCCACTTCTTCTTTTAGTCAAAGGCTTTCACGTTCGATATGAC
GATATGAAGACTGACGCCAACGTCATGAAATGGGACGTCATGGTTTTAAC
GGTACATCTTTGTTTGTTGTTATTGGTTCTTTCCTTAAGAGACTATCCTT
TGATTTTGGCTTTCACTCTAAGATTCCAAATTAATGAGGGGAATTGAGAT
GGATAAGTGGGGTTAGTGGAAAATCTCAAGCTTAATCGGGGGGTAAAAAT
TTCCTGGGGAAGAAGACTGAAATGCTGGACAACATTTTATCcttgaaata
tttatttctttcacttttaactttattctttatttttatagTTCAACCGC
AACAGACGACACATGGATCGAGCTACTGTTCTCAAGTTTTGGGAAGCACT
CGAAAAGTAAGCTCAATAATATCCCAACAAATACacagtttttttaaaaa
cagctacaattttcgggtcaggtcTTGGGTTACTTTGCATTCTtgttcat
tttctgaaaaattgctttgaccactcctgatattataccatgtTTATGGT
TATTGGGTAAAGGATATTCGTTTGACATGGTTAGGtttagcaacctggtt
gcttataaaaaatgtgtatcctTTTCACTTCTACGGCACCATTCAACgac
ttaaaatttcttttttcaagggGGTATGgtattgaaatttaaaacacCTT
GATGTTTAGTAACGTATTGGTATAGcaaacaaatcaaaatcaaagtgaAA
CCAAAGACTTTTGTTTTTGATCGTCAATATTGTAATATTTTCCCAATCTA
CCTTTTCAGATTCTTAGCGAAGAATAAACCGAACTTGAGGTTTTAAAGAT
TTGGTGGTTTTGAGTGGATTCTGAGTGAAATTGTATTGACGCTAGCAGCT
TGGTTAGagcgtaatttttttttttgtaaaatagaaaaagtattttaagc
TGTTTATTATATTAACAATATAGCAGTCTTTTAAATGAGGTGTTTATCTT
ACAGCTTCTTGAATAGATTTTCGTCTCAATAAATAGCTTTAAATAGACCA
TAAAAAAATAGGTTATTCTGAGCNGTCTCAATAAATAGCTTTAAATAGAC
CATGAAAAAATaggttattctgagcttatttttcaataaatttacaGGCT
GTATCTAATTTTGCTTTTGTAGTGTGGTAATTATTATAAAAGTGTCatta
taattttttaagtttaga

Coding sequence (CDS) from alignment at sc0000049:271311..274278+

>TCONS_00004859 ID=TCONS_00004859|Name=TCONS_00004859|organism=Clytia hemisphaerica|type=CDS|length=3948bp|location=Sequence derived from alignment at sc0000049:271311..274278+ (Clytia hemisphaerica)
TCAGGAAGCAAAAGTCCCGGAAAACCACAAAAAAGAGAATCAAAAACGCC
CATTATCATCGTACCGTCGGGAACAACTGCCCTTATATCACTTCTCAATG
CCAAAGACATACTACAAGACTATAGGTTTGTGAGCGTTGAAGAGAAAAAG
AGACTGGGCACGATAAAAGAGAACGAAGTGATGGTACAACGTAAAAAAGA
CACACTCATCAACAACACAATGCAAACGGTCACCATTCCATTCCGTATCG
TCGATCAACCCCTCAAACTACAACCAAATGAATGGAATCGTGTAGCAGCA
GTTTTCGTACAAGGACCAACCTGGCAATTCAAAGGATGGCCTCATTTACT
GCCTGATGGATCGCCTGTCGACATCCTCACCAAAATCAAAGGCTTTCACG
TTCGATATGACGATATGAAGACTGACGCCAACGTCATGAAATGGGACGTC
ATGGTTTTAACGTTCAACCGCAACAGACGACACATGGATCGAGCTACTGT
TCTCAAGTTTTGGGAAGCACTCGAAAAATTCTTAGCGAAGAATAAACCGA
ACTTGAGGTTTTAATCAGGAAGCAAAAGTCCCGGAAAACCACAAAAAAGA
GAATCAAAAACGCCCATTATCATCGTACCGTCGGGAACAACTGCCCTTAT
ATCACTTCTCAATGCCAAAGACATACTACAAGACTATAGGTTTGTGAGCG
TTGAAGAGAAAAAGAGACTGGGCACGATAAAAGAGAACGAAGTGATGGTA
CAACGTAAAAAAGACACACTCATCAACAACACAATGCAAACGGTCACCAT
TCCATTCCGTATCGTCGATCAACCCCTCAAACTACAACCAAATGAATGGA
ATCGTGTAGCAGCAGTTTTCGTACAAGGACCAACCTGGCAATTCAAAGGA
TGGCCTCATTTACTGCCTGATGGATCGCCTGTCGACATCCTCACCAAAAT
CAAAGGCTTTCACGTTCGATATGACGATATGAAGACTGACGCCAACGTCA
TGAAATGGGACGTCATGGTTTTAACGTTCAACCGCAACAGACGACACATG
GATCGAGCTACTGTTCTCAAGTTTTGGGAAGCACTCGAAAAATTCTTAGC
GAAGAATAAACCGAACTTGAGGTTTTAATCAGGAAGCAAAAGTCCCGGAA
AACCACAAAAAAGAGAATCAAAAACGCCCATTATCATCGTACCGTCGGGA
ACAACTGCCCTTATATCACTTCTCAATGCCAAAGACATACTACAAGACTA
TAGGTTTGTGAGCGTTGAAGAGAAAAAGAGACTGGGCACGATAAAAGAGA
ACGAAGTGATGGTACAACGTAAAAAAGACACACTCATCAACAACACAATG
CAAACGGTCACCATTCCATTCCGTATCGTCGATCAACCCCTCAAACTACA
ACCAAATGAATGGAATCGTGTAGCAGCAGTTTTCGTACAAGGACCAACCT
GGCAATTCAAAGGATGGCCTCATTTACTGCCTGATGGATCGCCTGTCGAC
ATCCTCACCAAAATCAAAGGCTTTCACGTTCGATATGACGATATGAAGAC
TGACGCCAACGTCATGAAATGGGACGTCATGGTTTTAACGTTCAACCGCA
ACAGACGACACATGGATCGAGCTACTGTTCTCAAGTTTTGGGAAGCACTC
GAAAAATTCTTAGCGAAGAATAAACCGAACTTGAGGTTTTAATCAGGAAG
CAAAAGTCCCGGAAAACCACAAAAAAGAGAATCAAAAACGCCCATTATCA
TCGTACCGTCGGGAACAACTGCCCTTATATCACTTCTCAATGCCAAAGAC
ATACTACAAGACTATAGGTTTGTGAGCGTTGAAGAGAAAAAGAGACTGGG
CACGATAAAAGAGAACGAAGTGATGGTACAACGTAAAAAAGACACACTCA
TCAACAACACAATGCAAACGGTCACCATTCCATTCCGTATCGTCGATCAA
CCCCTCAAACTACAACCAAATGAATGGAATCGTGTAGCAGCAGTTTTCGT
ACAAGGACCAACCTGGCAATTCAAAGGATGGCCTCATTTACTGCCTGATG
GATCGCCTGTCGACATCCTCACCAAAATCAAAGGCTTTCACGTTCGATAT
GACGATATGAAGACTGACGCCAACGTCATGAAATGGGACGTCATGGTTTT
AACGTTCAACCGCAACAGACGACACATGGATCGAGCTACTGTTCTCAAGT
TTTGGGAAGCACTCGAAAAATTCTTAGCGAAGAATAAACCGAACTTGAGG
TTTTAATCAGGAAGCAAAAGTCCCGGAAAACCACAAAAAAGAGAATCAAA
AACGCCCATTATCATCGTACCGTCGGGAACAACTGCCCTTATATCACTTC
TCAATGCCAAAGACATACTACAAGACTATAGGTTTGTGAGCGTTGAAGAG
AAAAAGAGACTGGGCACGATAAAAGAGAACGAAGTGATGGTACAACGTAA
AAAAGACACACTCATCAACAACACAATGCAAACGGTCACCATTCCATTCC
GTATCGTCGATCAACCCCTCAAACTACAACCAAATGAATGGAATCGTGTA
GCAGCAGTTTTCGTACAAGGACCAACCTGGCAATTCAAAGGATGGCCTCA
TTTACTGCCTGATGGATCGCCTGTCGACATCCTCACCAAAATCAAAGGCT
TTCACGTTCGATATGACGATATGAAGACTGACGCCAACGTCATGAAATGG
GACGTCATGGTTTTAACGTTCAACCGCAACAGACGACACATGGATCGAGC
TACTGTTCTCAAGTTTTGGGAAGCACTCGAAAAATTCTTAGCGAAGAATA
AACCGAACTTGAGGTTTTAATCAGGAAGCAAAAGTCCCGGAAAACCACAA
AAAAGAGAATCAAAAACGCCCATTATCATCGTACCGTCGGGAACAACTGC
CCTTATATCACTTCTCAATGCCAAAGACATACTACAAGACTATAGGTTTG
TGAGCGTTGAAGAGAAAAAGAGACTGGGCACGATAAAAGAGAACGAAGTG
ATGGTACAACGTAAAAAAGACACACTCATCAACAACACAATGCAAACGGT
CACCATTCCATTCCGTATCGTCGATCAACCCCTCAAACTACAACCAAATG
AATGGAATCGTGTAGCAGCAGTTTTCGTACAAGGACCAACCTGGCAATTC
AAAGGATGGCCTCATTTACTGCCTGATGGATCGCCTGTCGACATCCTCAC
CAAAATCAAAGGCTTTCACGTTCGATATGACGATATGAAGACTGACGCCA
ACGTCATGAAATGGGACGTCATGGTTTTAACGTTCAACCGCAACAGACGA
CACATGGATCGAGCTACTGTTCTCAAGTTTTGGGAAGCACTCGAAAAATT
CTTAGCGAAGAATAAACCGAACTTGAGGTTTTAATCAGGAAGCAAAAGTC
CCGGAAAACCACAAAAAAGAGAATCAAAAACGCCCATTATCATCGTACCG
TCGGGAACAACTGCCCTTATATCACTTCTCAATGCCAAAGACATACTACA
AGACTATAGGTTTGTGAGCGTTGAAGAGAAAAAGAGACTGGGCACGATAA
AAGAGAACGAAGTGATGGTACAACGTAAAAAAGACACACTCATCAACAAC
ACAATGCAAACGGTCACCATTCCATTCCGTATCGTCGATCAACCCCTCAA
ACTACAACCAAATGAATGGAATCGTGTAGCAGCAGTTTTCGTACAAGGAC
CAACCTGGCAATTCAAAGGATGGCCTCATTTACTGCCTGATGGATCGCCT
GTCGACATCCTCACCAAAATCAAAGGCTTTCACGTTCGATATGACGATAT
GAAGACTGACGCCAACGTCATGAAATGGGACGTCATGGTTTTAACGTTCA
ACCGCAACAGACGACACATGGATCGAGCTACTGTTCTCAAGTTTTGGGAA
GCACTCGAAAAATTCTTAGCGAAGAATAAACCGAACTTGAGGTTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002752	XLOC_002752	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004859-protein	TCONS_00004859-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000049	supercontig	sc0000049:271311..274278 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.0304	36.8269	21.2145	18.5987	49.025	35.9397	37.6661	35.4968	28.9532	32.5105	36.0916	28.8786	21.4913	22.8567	20.1454	25.0592	29.5557	26.3244	18.7275	17.3774	18.9625	14.2526	30.8015	28.8655	29.7307	29.8449	15.3482	12.9616	21.7144	22.8389

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR031336	CDC73_C

Blast

[Close]

BLAST of TCONS_00004859 vs. Swiss-Prot (Human)
Match: CDC73 (Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.031e-73
Identity = 104/179 (58.10%), Postives = 142/179 (79.33%), Query Frame = 3

Query:   30 QKRESKTPIIIVPSGTTALISLLNAKDILQDYRFVSVEEKKRLGTIKENEVMVQRKKDTLI-NNTMQTVTIPFRIVDQPLKLQPNEWNRVAAVFVQGPTWQFKGWPHLLPDGSPVDILTKIKGFHVRYDDMKTDANVMKWDVMVLTFNRNRRHMDRATVLKFWEALEKFLAKNKPNLRF 563
            QK+ S+TPIII+P+ TT+LI++LNAKD+LQD +FV  +EKK+ G  +ENE ++QR+KD +    T  +VT+P+R+VDQPLKL P +W+RV AVFVQGP WQFKGWP LLPDGSPVDI  KIK FH++YD+++ D NV KWDV VL  + ++RH+DR   L+FWE L++++ K+K +LRF
Sbjct:  353 QKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKYDEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF 531

The following BLAST results are available for this feature:

BLAST of TCONS_00004859 vs. Swiss-Prot (Human)

BLAST of TCONS_00004859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDC73	7.031e-73	58.10	Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1	[more]

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TCONS_00004859 (transcript) - C. hemisphaerica