TCONS_00004863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004863
Unique NameTCONS_00004863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004863 ID=TCONS_00004863|Name=TCONS_00004863|organism=Clytia hemisphaerica|type=transcript|length=2414bp
CTTGATTCAATCATTTTATGATTACTTGGCAtcattttcagAGAAGTTTG
AATAAGAAATCAGGAGATGTCAAAACGTAATTCAACCATAAAAGCTAAGA
CACCTTCAGATATGGCTGCTTATAATGTTAGTCCAGGAAACTTTTGGGAA
ATTGGAAATTATACTAGATGTTGTAAAAGAATTACAGACAGTAATAATTT
GTGTGATGACTTAATAAAAATGTACACTGAAAGGGCTGAAATAGAAGCCA
AATACAGCAAAAAGTTGACAGACTGGCATGAACGATGGTCCAAACATTTA
GAAGCTTCTCCAGCAGTTTATGCCACAATGAAAACAGCTCATTTAGGGAC
ATTGAAAGAAGCCCACGATAGGGCTATTATTCACATGGACTGCTGGACCA
AAATACACAATCAAGTTGTGGAAACTATCAAACGTGAAAAAGAGTCCAAA
TATCATAAAGCTTTTGTTGGTATCAAAGAATACAAAGAGCTTGATGAAGA
ATTTGGTAAGGCTCAAAAACCATGGGCTACAGCATTCGGGAAAGTTCAAC
GTGCAAAAAAGAATTATCATTCTGCCTGTAAATCAAGAGACTCTGCAAAG
CTAAATCTTGATCAAAATAAAGATGTTGCACCTCCTGAAAAGATAAAGAA
ACTGGAGGAAGCTATCGAAAAACAGGAAAAGTCTGTCTCTACAATGCAAg
gaaaatatgaagaaaaactttcaagaaTCGAACCAATCAACAAGTCGTAt
gaagatgaaatgaaaaaagtttattcaaaattttcgaaagctGAAGAAGA
ACGTAAAGATTTTTTGCAAAGGATAATGGTGGAATTTCATAAAGCAGTCA
ACGTGTCGGAAGATCCTAGGCTTAAAGAATGTTTCGAGAACCAAATCAAT
GCAGCATACGCAGGAAAAAGTAGCTATGACGTCACTTGGTATTCCGAAAA
CTATGGTGCTGACATGGCAAGAAACTGGCCCAAATTTGAGGAATTAGGAG
ACCTGCCAGATCTCCCTGCACCAGTGCGTGCTGTGGAGCCTCCAGAGAAC
CAGCGTTTCAGTAGCAATTCATCTATTCCACGGTCGGGCTCCAGTCAGTT
CCAGCAACAAACCAATACATTGTATGAACCAGCTTCTCAACAGAGTGTTG
TACCCGTACAATCACAACAGGTGGCTTCTTATCAACCGAACAATGAACCA
GAAGAATCGAATCCTTTCATGAATGGCGATGATGATGACGATGTAGATGG
AGCCGAATGGGATAACCCACCACCACTGCCAGCAGAAGGAGTTCCAGTAC
GCGCTCTTTATGATTACGATAAGGTCGAGGATGATGAACTCTCTTTCAAA
GCAAATGATATTCTCACCAAGTTGAGTGAAGAAGACGAACAAGGGTGGTG
CAGAGGGCGCCTCGATGGCGTCGAAGGATTGTATCCCGCCAATTATGTTG
AACTCATGTGAATAATGGGCAGTTGTTTGAAATGGAAATTACCGTAGTTC
GATTGGTTGGCGTTGTTCATTATCCCCAGCTCAGAAGACGTTGGATTTAA
GCATCCGGTTCCTGATCAGAATGTTTGAAGGGATTTAATCTCACGTGGAT
GATGTTTAAGTAGTTATTCTACGCAAGTTCAATGTAAACCGAAGAAAAAA
GATCCCTAAATAAAGGGTCCCATAGATTTTCCAGGAGATTTCTACATATT
GCCAAGAAAATGGAATAAAATCGTCCAAAACAGtatattaaaaagaaaga
agagattATTAAGAGAATACACAACTATTCATTAGGTCACTAGTTATATC
AATCAACGCTACATTTATTATCGCCGTGTTTCTGCTCCGATTGTGGCCGT
TAAAAAGGAGATGGCTTTCCGGAGCATTCCAATGGAATGATGTTCACAAG
GGAGTTCTTTAAAGTGATACTCGAACGTTGGTTTAAAATGATGACGTGAC
ATGTTCAGTTagttaaatattttttccaatttttcaagtattttatgttt
tatctgtcgcgtttgttttttttagtttccaTAGCAACTTTAACTTTAAG
TTGACTTTGtttttaatggattttttcATACATCAGGTGTAATTGtagtc
tgaattgcagacctctGCAAAACACCAGGTAGTATAGGAATCCAGCAGCC
TAGTATATTTGAACATGTTTTCAAAACCTTTGAGACTTTTGGAGATTTTA
TCGTATTTTCCAATGGTGACCGTGCAACTTTCTCCCCCAATGTCGAAATT
TTCACTAAGTAGTaatcttaaattttcaaatatataaTGATATCATAATT
TTTAGTCTGCGGTTTATTAGTTTAGAATCATCACGAATATTATAGATGGA
ACAGGAAAATGTAATTAGCAGGTTATATTTATGTACAAAAATgaattcat
tttgaaaatgaaac
Run BLAST on NCBI

protein sequence of TCONS_00004863-protein

>TCONS_00004863-protein ID=TCONS_00004863-protein|Name=TCONS_00004863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MSKRNSTIKAKTPSDMAAYNVSPGNFWEIGNYTRCCKRITDSNNLCDDLI
KMYTERAEIEAKYSKKLTDWHERWSKHLEASPAVYATMKTAHLGTLKEAH
DRAIIHMDCWTKIHNQVVETIKREKESKYHKAFVGIKEYKELDEEFGKAQ
KPWATAFGKVQRAKKNYHSACKSRDSAKLNLDQNKDVAPPEKIKKLEEAI
EKQEKSVSTMQGKYEEKLSRIEPINKSYEDEMKKVYSKFSKAEEERKDFL
QRIMVEFHKAVNVSEDPRLKECFENQINAAYAGKSSYDVTWYSENYGADM
ARNWPKFEELGDLPDLPAPVRAVEPPENQRFSSNSSIPRSGSSQFQQQTN
TLYEPASQQSVVPVQSQQVASYQPNNEPEESNPFMNGDDDDDVDGAEWDN
PPPLPAEGVPVRALYDYDKVEDDELSFKANDILTKLSEEDEQGWCRGRLD
GVEGLYPANYVELM
Run BLAST on NCBI

transcript from alignment at sc0000049:349829..358815+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004863 ID=TCONS_00004863|Name=TCONS_00004863|organism=Clytia hemisphaerica|type=transcript|length=8987bp|location=Sequence derived from alignment at sc0000049:349829..358815+ (Clytia hemisphaerica)
CTTGATTCAATCATTTTATGATTACTTGGCAtcattttcaggtttttttt tgtattaaaaggACTTCGGAAACTCCAAATTTTgtcgtttgttttgtttt tttgcagaGCAAGGGGATCGTTTTTTAACAACTTTATGCTAAGAAAATTT TCGTTTGTTTGAACAACACagataaatttctttgtttttctttcgttATA GAGAAGTTTGAATAAGAAATCAGGAGATGTCAAAACGTAATTCAACCATA AAAGCTAAGACACCTTCAGATATGGCTGCTTATAATGTTAGTCCAGGAAA CTTTTGGGAAATTGGAAATTATACTAGATGTTGTAAAAGAATTACAGACA GTAATAATTTGTGTGATGACTTAATAAAAATGTACACTGAAAGGGCTGAA ATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGGCATGAACGATGGTC CAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCACAATGAAAACAGCTC ATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTATTATTCACATGGAC TGCTGGACCAAAATACACAATCAAGTTGTGGAAACTATCAAACGTGAAAA AGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAAAGAATACAAAGAGC TTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGGCTACAGCATTCGGG AAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCCTGTAAATCAAGAGA CTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGTTGCACCTCCTGAAA AGGTAAAAATTTCACAGtacaaaaaaatggaaaaaagtcAAATTCTAAAT TGTTCATGAAATTTTAAACCAAACagtaaaaagtaacaaaaaatcAACTA CTGTACTGTAAGTCTATTTCTGTCACCTTTCTTAGAGActggaataatag gaaggtNGTCAAATTCTACATTGttcatgaaattttaaacacgaccctcg acatggcccgagaattctcgggcctcttcgggccatgttcgggccgagag accctatcaattcttttggcccgaacatgacccgaagaggcccgagaatt ctcgggcctcttcgggccatgttcgggccgagagaccctatcaattcttt tggcccgaacatgacccgagtcattcgggccatgttcgggccatgttaat tgttaaattgactcagcatgtccagtcaaacaaaatagtacaaaatattg tctgttttgtttctatcgctcaaaaaaactttacgagcttcccgtggaca cgcttcagtttaaaaccaggaccagtttactagcaaattatttccaccct aagtatatctataatataactatgttttcataccaaataagacatttaat atttatatgaatttacaacattcatatattcagtcctgaaattacacgcc tgtttaaatcatgttttcaaaagttggcccgagtgtggcccgtgcgtggc ccgcgtatggcccgaacacggcccgaattctcgggccatactcgggcctt acgcgaattccaataaaNAAATttctttaggcgtacaaactttcatgatt tttgcaaattttagcccttttcgtgaaagtaaatgtctcagaaaattctt gagaggataatttgcgaaagtttatgctcgaaaaaaaatctgaaaagaaa atttactcaaatttttctttatcatGATGACAAGGATAAGATTTAGTGTA GATATTATGCAAAAGTCCATGAATTGTGGTTTGAATACGatcaaaaaact ggttttatgCACAGAAAACTTGAATACGtttgcgaaaaattttttttgtc aattttgtgaAAGTAAATATCGTAGATTTCACAATTTTTCGACCTCGCTA AAGTTTCTGATCGCAAAACTttttacgcctaaagtagtagGGGATGGTAA TATAAGACCAACTTACAGACCTTCTTAACAAGAGCGCTAACAAGCACTGT TTAGTGTGGCAATTTGGATgccaaaaattcgaaatttcaaataatttcaa ataaatacttttgtGCAGTGTTATGTAACGTAGCTTTTTGTAATGTCAAC ATCCTTGTCTAATTCCgccatagcaactatctggtctgcaaagtaTTTAG AGTGAATTCTTTAAACAACTGATTTAGAAGGTTTTATccatgaaaatttt gaagaccagatagttgctatgatGGAATAAGACAAGGTATGTCGGCATTA GGCAAAGTTACAGTNgctcgggccatactcgggctttacgcgaattccaa taaaagtttggcccgagaattctcaggccatgtcgagggtcgttttTAAA CCAAACagtaaaaagtaacaaaaaaccAACTACTGTACTGTAAGTCTATT ATGTCACTTTTCTTAGAGActggaataataggaaggttagAATCGCTTCA TGAAAAATCGCTTTTCCTGTCTGGCCACTATACAACCAACAGCATTGCCC GAACATGTGCAGGCCTCACGATTACAAAGCTtacaaaggcttataacggc tacatatagtgctggtcgacaaagataaacaaacatcgactgtaaaaaat ctgtctaaagtcaatgcattgccctcttttgacatCAATGCAatgtaatg tcttctttcaatcttttccaagcaaagattttaactgccaactttggGCC TACtcaaacaattagaataggcagggaaGAAAGTCtaccgtctaaactag agctaaagaATCGtgtcaattgaaaaaaaattagtgaTGCCTACCTTTCT ATTATACTTTTCTCTAGTGAAGGGTGACagaattactttaggcgtacaaa cttttgcgagcagaaactttcacgatttttgcaaattttagcccttttcg cgaaagtaaatgtcttagaaaattcttgagaggataattcgcgaaagttt atgctcgaaaaaaaatctgaaaagaaaatttactcaaATCTTTCTTTATC ATGATGACAAGGATAAGATTTAGTGTAGATATTATGCAAAAGTCCTTGAA TTGTGGTTTGAATACATTTGAGCGatcaaaaaactggttttatgCACAGA AAACTTGAATTTTCTGCTAAAAATATTTGTCATATATACGtttgcgaaaa attatttttatcaatttcgtGAAAGTAAATATCGAAGATTTCACAATTTT TCGACCTCGTGAAactttgtacgcctaaagtaatagAGGATGGTAATATA AGACCAACTTACAGACCTTCTTAACAAGAGCGCTAACAAGCACTGTTTAG TGTGGCAATTTGGATgccaaaaattcgaaatttcaaataatttcaaataa ataCATTTGTCCAGTGTTATGTAACGTAGCTTTTTGTAATGTCAACATCC TTGTCTAATTCCGCCATCgcaactatctggtctgcaaagtaTTTAGAGTG AATTCTTTAAACTTTAGAAGGTTTTATccatgaaaattttgaagaccaga tagttgctatgatGGAATAAGACAAGGTATGTCGGCATTAGGCAAAGTTA CAGTACAAATTTTACTGAAATAAATGTTAGAAGCCAATTTTATGTCGCCC TAAACAAGCTGACTGTAATCCAAGAAGAAATTTAgttgaaaatttaattt aagaTATGATCAGAAAAGTTTACTTCAGAGAGAAATTAGTTTGGTGGATG ACTGGAAGATTTAAATTTGACAGGATTTTATTCTACGTACGAAGgatatt ttttgccaaaatccaTTTCCAATAAGCATAAAACCTGTTTGATGGTATAA ACTGATGAAATTGTGGGAATTAGGAAATGCATAAAATAGTctagatttgg aaaaaatttaattttgcaagcATAGTAGGAAAGATCAATTTTGGTAAAGt ctgaaaaatttgccaaattttctttcctctAAAATTCCTTTAAAAGGTAC TACAGGAAAAAGTTTTACTTTGCGTCCAGTTggatttccaaaaattgaaa ttctaaaCTTAACACTGAGTAAAACTTGTACCAcaagaaagctcttttta acAGACATGACTGTTTCTTACCTTGAGTCATTCAACTTGGAAATCATGAA AATATGCAAGAAACAAGCATAAAGGCCAAAAAGGTTACGTTTAAGAAAAC CTCAATATCTTAATTGCAGATAAAGAAACTGGAGGAAGCTATCGAAAAAC AGGAAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaaactttca agaaTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagttta ttcaaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGA TAATGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGTAA GTAATAGAAGTTACTGATGTATCTTTGTATCCCATTATTTATGCCTTTTT AGAATTTGGTTATCAGACGCTGCAAAAAAAGCCTTTGAGAAGAAAAAGTT CTGTTTTCAGTCTTTTAGTTTTCATGCGTCTTCAGCGCATACCTCCCTGT GTTTCCACAAGTTAGCCTGCTTTGTGTTTCTATCTATTCatcattttatt gttctaaCTAAAAAACAAAGGTATTGAATTTTTAGCTTGTTTTTCTAAAT ATGAAAAGGGTGGGTCAGTTGGATAGTGAATCTTATCTGCTTGTGTTCTA GGCTTAAAGAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAA AGTAGCTATGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATGGC AAGAAACTGGCCCAAATTTGAGGTATGTTTCTCTGCCTCTATGTCAGTAG TCACATTCGAGGTAAAGATATCAGTAATGCGTGTTTATAAATAGTTGTGG CTAGGAAAAGTGGCTTTGGACTTCCTTTCCCATTTTTCATCATACTTTCA TATCATTCCTTTCATTCTTTCGTAGGTATTCTCTTCTTCAGAATGGAACC CTTGGAGTAGAAACAGTTTATCAAGTACTCAGAGAAAGCAGAATCGCAGA TATGCCACTAGACCTAGGCCACGTCCTTATGATTTAGACAAGTCTCCTAG GGTATACTGTACTTTTAGACAAAAAGCTAGAGAAGCCTTCTTGATAAAAC AATGTCAGCTTGTTCAGGATGATAATAGATTTATGGATTTTGTTGTTAAA GTCTGGTTATtcttgtttttgacttttagctGATTGtcaaagttttttat caataacaCAGTATATACTTTGATTGATCAATCTGTTATCTCTTTCTTTT CTCTATGGGAATATGTATGAGAGTTGTGTGTTGTGTATATATTTACGTTT ACAGTTTCTTTTTATAGTAGTAGACTTATGACAGGATGAAACCTGAGCTT TATAATGACTACTCTATGTCATGCAATGTCTCTGGTTTTCTACTTTCAAC CCTTCTACTTTATAATGGTGCTCTGTTATAGGAATTAGGAGACCTGCCAG ATCTCCCTGCACCAGTGCGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTC AGTAGCAATTCATCTATTCCACGGTCGGGCTCCAGTCAGTTCCAGCAACA AACCAATACATTGTATGAACCAGCTTCTCAACAGAGTGTTGTACCCGTAC AATCACAACAGGTGGCTTCTTATCAACCGAACAATGAACCAGAAGAATCG AATCCTTTCATGAATGGCGATGATGATGACGATGTAGATGGGtaagggaa tttttttattgatttcattGTTTAATTTGGGTTTAAATGTATATAACACT AAGAAATTCAGCAAAACGAATCAAAGCTAATTGGTTGGAGTGTGACGTCA GTCCCAAAATAGATCAATAAAAAGTATCGTTTACTTTTTGAATGATCCTT CATGTAAGGCAGAAATGTCACGACATTTAGCCAAGAATTTCCTTCAGTGA TGGTTTATTTTGTGTTCTGACTAGTTAAAGCTCAGTACAAACTGGTAAGG AGATGAGTTGATTATAGTCTTGATATAGATATTACTCGTGATGACTAATC GATTGTTTgcaattcaatttcaattaGCAACCAATCTTACGAAATTGATA CATTCGTTATAGTAACAAACAAACACTTAATTGATGAGCTATGCCCTTTC GGCTTTACTCAGATTTTACATTTCATACATAGAGATTCTCATTCTGATAA AACCTGAAAGAATTCATGGCATTTTTGTAATAAAGCTAAATCAGGCTTTA ATTTCTTGCAACTAATGGCTTTTCCGTAATTAGAACATATTTGATTCAAC AATAACATGATTTCCTCTTTTGGAAATCAGTTTGTCACGCGTGGTCCTAT CATATTTTGTAGACGAggatattttcgattttcgaaagTTCATACTGAGA CTTCTATGCTGGATTTTTtcttcgaacatttttattatgGACTCATGGGG ATTGCTCTTCCTCTTTTATGATGATATCgattcaaatttctcatattTTG TGAATTAGTGATTATTCCCCTTGTGATATCTTGATTTAAAAGTAGTTTAA TACATCAAgctatttataagcacattgaAGGGTTTCTGCTATATTTCTGA CATGGTATGTCAATCTGTCACCCTACCCTGTTTAATCacattttttcact gtttattATCGAGTAAATATTATTTCTCTCATTCACATTACATTGCTGTT AAAATTCTTTGTTGTAAGACTGATCACTTCAGATCATAATTGTAGTAAAA TTTTGTGGGTGTACTGTAATGTGATACCAATTTCGCTTCAGTCTGTAgta ttttaaatgattttaacCCTTGTTTGAAAATTAATGTTATTAGATTTTGT AGATTATTAATAGAATATTGCGCAATCAACGAGCATCGGGATATTTGATA ATCAAATTCTTTACAGGGTGGTATGTTGTATTTAAACATCTTGCATAAAC GTCGTTCGATTTATCTCAACGATCTGACGACCTCACAAATCTTAAACAAT AATCAATAAGTGATAAGGGTTTTTTTGCTTCTGAGCTCTCTTGTGGTTTA AGTTGACTGCGGtgattttcgaataaaattgTTCGCATTCCATCTGTTCT TAATAATGTTTATTTTTAACATGGGTTTTAATCATTATTTGTTTTTCCTC AAAACAAGACGGATAATTGTCTCGTCGAGTTTGACACAGCTCACTTCATC CGATTCATGCATTGTTGACCTTTTTGTTTCTAATATTTCCGTATAAGAGA TCACGTCAcagaatatcatgaatatcgaAAACTTTTCTCGTCTAATAATC AGTAGGATCATGGACTAAAATGGGTAAATTTAAGCTTTTCATTTTCAGCC CAGGTCCAGATGCATGAAATGTAGTTTGACTAGAAAAGGCAAAGACTTTG ATTCACACTTTATTAAAATCTTGAGCTGGCCTTTACTAGCTGCATACTAA TTTTCTAACAAAAGATCTTGAATTTgacattttgttttctttttcttccg CAGAGCCGAATGGGATAACCCACCACCACTGCCAGCAGAAGGAGTTCCAG TACGCGCTCTTTATGATTACGATAAGGTCGAGGATGATGAACTCTCTTTC AAAGCAAATGATATTCTCACCAAGTTGAGTGAAGAAGACGAACAAGGGTG GTGCAGAGGGCGCCTCGATGGCGTCGAAGGATTGTATCCCGCCAATTATG TTGAACTCATGTGAATAATGGGCAGTTGTTTGAAATGGTAAGTGAAGATT TAaacttttcgaattttcgaCACATTCTCTCGATTATGTAACAGATAAAG GGTCAGAAGGGACTTTATAAATACCAATTGCCCCTCCTCCTAGAGGGTAA TTTTTATCGGTTGTTGACGAGTCGCTTAATCTTAATATTCAATGTGTTTA ATTTCAATCAAATGTTTTCCACAAAAGTTCTGCTTTTATAATGGGATATA TTGTTGCAGAAAATCTTTGTCATGTTTTGTCACTTGTGTCAACTTTTCTT ATCTCCTATCGACTCGTCTTCGAATTGCTAACGTCTTTGCATTTTTTAAC TTTCCAGGAAATTACCGTAGTTCGATTGGTTGGCGTTGTTCATTATCCCC AGCTCAGAAGACGTTGGATTTAAGCATCCGGTTCCTGATCAGAATGTTTG AAGGGATTTAATCTCACGTGGATGATGTTTAAGTAGTTATTCTACGCAAG TTCAATGTAAACCGAAGAAAAAAGATCCCTAAATAAAGGGTCCCATAGAT TTTCCAGGAGATTTCTACATATTGCCAAGAAAATGGAATAAAATCGTCCA AAACAGtatattaaaaagaaagaagagattATTAAGAGAATACACAACTA TTCATTAGGTCACTAGTTATATCAATCAACGCTACATTTATTATCGCCGT GTTTCTGCTCCGATTGTGGCCGTTAAAAAGGAGATGGCTTTCCGGAGCAT TCCAATGGAATGATGTTCACAAGGGAGTTCTTTAAAGTGATACTCGAACG TTGGTTTAAAATGATGACGTGACATGTTCAGTTagttaaatattttttcc aatttttcaagtattttatgttttatctgtcgcgtttgttttttttagtt tccaTAGCAACTTTAACTTTAAGTTGACTTTGtttttaatggattttttc ATACATCAGGTGTAATTGtagtctgaattgcagacctctGCAAAACACCA GGTAGTATAGGAATCCAGCAGCCTAGTATATTTGAACATGTTTTCAAAAC CTTTGAGACTTTTGGAGATTTTATCGTATTTTCCAATGGTGACCGTGCAA CTTTCTCCCCCAATGTCGAAATTTTCACTAAGTAGTaatcttaaattttc aaatatataaTGATATCATAATTTTTAGTCTGCGGTTTATTAGTTTAGAA TCATCACGAATATTATAGATGGAACAGGAAAATGTAATTAGCAGGTTATA TTTATGTACAAAAATgaattcattttgaaaatgaaac

Coding sequence (CDS) from alignment at sc0000049:349829..358815+

>TCONS_00004863 ID=TCONS_00004863|Name=TCONS_00004863|organism=Clytia hemisphaerica|type=CDS|length=6975bp|location=Sequence derived from alignment at sc0000049:349829..358815+ (Clytia hemisphaerica)
ATGTCAAAACGTAATTCAACCATAAAAGCTAAGACACCTTCAGATATGGC
TGCTTATAATGTTAGTCCAGGAAACTTTTGGGAAATTGGAAATTATACTA
GATGTTGTAAAAGAATTACAGACAGTAATAATTTGTGTGATGACTTAATA
AAAATGTACACTGAAAGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTT
GACAGACTGGCATGAACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAG
TTTATGCCACAATGAAAACAGCTCATTTAGGGACATTGAAAGAAGCCCAC
GATAGGGCTATTATTCACATGGACTGCTGGACCAAAATACACAATCAAGT
TGTGGAAACTATCAAACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTG
TTGGTATCAAAGAATACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAA
AAACCATGGGCTACAGCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTA
TCATTCTGCCTGTAAATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAA
ATAAAGATGTTGCACCTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATC
GAAAAACAGGAAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaa
actttcaagaaTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaa
aagtttattcaaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTG
CAAAGGATAATGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCC
TAGGCTTAAAGAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAA
AAAGTAGCTATGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATG
GCAAGAAACTGGCCCAAATTTGAGGAATTAGGAGACCTGCCAGATCTCCC
TGCACCAGTGCGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCA
ATTCATCTATTCCACGGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAAT
ACATTGTATGAACCAGCTTCTCAACAGAGTGTTGTACCCGTACAATCACA
ACAGGTGGCTTCTTATCAACCGAACAATGAACCAGAAGAATCGAATCCTT
TCATGAATGGCGATGATGATGACGATGTAGATGGAGCCGAATGGGATAAC
CCACCACCACTGCCAGCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTA
CGATAAGGTCGAGGATGATGAACTCTCTTTCAAAGCAAATGATATTCTCA
CCAAGTTGAGTGAAGAAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGAT
GGCGTCGAAGGATTGTATCCCGCCAATTATGTTGAACTCATGTGAATGTC
AAAACGTAATTCAACCATAAAAGCTAAGACACCTTCAGATATGGCTGCTT
ATAATGTTAGTCCAGGAAACTTTTGGGAAATTGGAAATTATACTAGATGT
TGTAAAAGAATTACAGACAGTAATAATTTGTGTGATGACTTAATAAAAAT
GTACACTGAAAGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTTGACAG
ACTGGCATGAACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTAT
GCCACAATGAAAACAGCTCATTTAGGGACATTGAAAGAAGCCCACGATAG
GGCTATTATTCACATGGACTGCTGGACCAAAATACACAATCAAGTTGTGG
AAACTATCAAACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGT
ATCAAAGAATACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACC
ATGGGCTACAGCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTATCATT
CTGCCTGTAAATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAAATAAA
GATGTTGCACCTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAA
ACAGGAAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaaacttt
caagaaTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagtt
tattcaaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAG
GATAATGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGC
TTAAAGAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAAAGT
AGCTATGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATGGCAAG
AAACTGGCCCAAATTTGAGGAATTAGGAGACCTGCCAGATCTCCCTGCAC
CAGTGCGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCA
TCTATTCCACGGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAATACATT
GTATGAACCAGCTTCTCAACAGAGTGTTGTACCCGTACAATCACAACAGG
TGGCTTCTTATCAACCGAACAATGAACCAGAAGAATCGAATCCTTTCATG
AATGGCGATGATGATGACGATGTAGATGGAGCCGAATGGGATAACCCACC
ACCACTGCCAGCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTACGATA
AGGTCGAGGATGATGAACTCTCTTTCAAAGCAAATGATATTCTCACCAAG
TTGAGTGAAGAAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGT
CGAAGGATTGTATCCCGCCAATTATGTTGAACTCATGTGAATGTCAAAAC
GTAATTCAACCATAAAAGCTAAGACACCTTCAGATATGGCTGCTTATAAT
GTTAGTCCAGGAAACTTTTGGGAAATTGGAAATTATACTAGATGTTGTAA
AAGAATTACAGACAGTAATAATTTGTGTGATGACTTAATAAAAATGTACA
CTGAAAGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGG
CATGAACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCAC
AATGAAAACAGCTCATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTA
TTATTCACATGGACTGCTGGACCAAAATACACAATCAAGTTGTGGAAACT
ATCAAACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAA
AGAATACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGG
CTACAGCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCC
TGTAAATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGT
TGCACCTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAAACAGG
AAAAGTCTGTCTCTACAATGCAAggaaaatatgaagaaaaactttcaaga
aTCGAACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagtttattc
aaaattttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGATAA
TGGTGGAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGCTTAAA
GAATGTTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAAAGTAGCTA
TGACGTCACTTGGTATTCCGAAAACTATGGTGCTGACATGGCAAGAAACT
GGCCCAAATTTGAGGAATTAGGAGACCTGCCAGATCTCCCTGCACCAGTG
CGTGCTGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCATCTAT
TCCACGGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAATACATTGTATG
AACCAGCTTCTCAACAGAGTGTTGTACCCGTACAATCACAACAGGTGGCT
TCTTATCAACCGAACAATGAACCAGAAGAATCGAATCCTTTCATGAATGG
CGATGATGATGACGATGTAGATGGAGCCGAATGGGATAACCCACCACCAC
TGCCAGCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTACGATAAGGTC
GAGGATGATGAACTCTCTTTCAAAGCAAATGATATTCTCACCAAGTTGAG
TGAAGAAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGTCGAAG
GATTGTATCCCGCCAATTATGTTGAACTCATGTGAATGTCAAAACGTAAT
TCAACCATAAAAGCTAAGACACCTTCAGATATGGCTGCTTATAATGTTAG
TCCAGGAAACTTTTGGGAAATTGGAAATTATACTAGATGTTGTAAAAGAA
TTACAGACAGTAATAATTTGTGTGATGACTTAATAAAAATGTACACTGAA
AGGGCTGAAATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGGCATGA
ACGATGGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCACAATGA
AAACAGCTCATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTATTATT
CACATGGACTGCTGGACCAAAATACACAATCAAGTTGTGGAAACTATCAA
ACGTGAAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAAAGAAT
ACAAAGAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGGCTACA
GCATTCGGGAAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCCTGTAA
ATCAAGAGACTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGTTGCAC
CTCCTGAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAAACAGGAAAAG
TCTGTCTCTACAATGCAAggaaaatatgaagaaaaactttcaagaaTCGA
ACCAATCAACAAGTCGTAtgaagatgaaatgaaaaaagtttattcaaaat
tttcgaaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGATAATGGTG
GAATTTCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGCTTAAAGAATG
TTTCGAGAACCAAATCAATGCAGCATACGCAGGAAAAAGTAGCTATGACG
TCACTTGGTATTCCGAAAACTATGGTGCTGACATGGCAAGAAACTGGCCC
AAATTTGAGGAATTAGGAGACCTGCCAGATCTCCCTGCACCAGTGCGTGC
TGTGGAGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCATCTATTCCAC
GGTCGGGCTCCAGTCAGTTCCAGCAACAAACCAATACATTGTATGAACCA
GCTTCTCAACAGAGTGTTGTACCCGTACAATCACAACAGGTGGCTTCTTA
TCAACCGAACAATGAACCAGAAGAATCGAATCCTTTCATGAATGGCGATG
ATGATGACGATGTAGATGGAGCCGAATGGGATAACCCACCACCACTGCCA
GCAGAAGGAGTTCCAGTACGCGCTCTTTATGATTACGATAAGGTCGAGGA
TGATGAACTCTCTTTCAAAGCAAATGATATTCTCACCAAGTTGAGTGAAG
AAGACGAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGTCGAAGGATTG
TATCCCGCCAATTATGTTGAACTCATGTGAATGTCAAAACGTAATTCAAC
CATAAAAGCTAAGACACCTTCAGATATGGCTGCTTATAATGTTAGTCCAG
GAAACTTTTGGGAAATTGGAAATTATACTAGATGTTGTAAAAGAATTACA
GACAGTAATAATTTGTGTGATGACTTAATAAAAATGTACACTGAAAGGGC
TGAAATAGAAGCCAAATACAGCAAAAAGTTGACAGACTGGCATGAACGAT
GGTCCAAACATTTAGAAGCTTCTCCAGCAGTTTATGCCACAATGAAAACA
GCTCATTTAGGGACATTGAAAGAAGCCCACGATAGGGCTATTATTCACAT
GGACTGCTGGACCAAAATACACAATCAAGTTGTGGAAACTATCAAACGTG
AAAAAGAGTCCAAATATCATAAAGCTTTTGTTGGTATCAAAGAATACAAA
GAGCTTGATGAAGAATTTGGTAAGGCTCAAAAACCATGGGCTACAGCATT
CGGGAAAGTTCAACGTGCAAAAAAGAATTATCATTCTGCCTGTAAATCAA
GAGACTCTGCAAAGCTAAATCTTGATCAAAATAAAGATGTTGCACCTCCT
GAAAAGATAAAGAAACTGGAGGAAGCTATCGAAAAACAGGAAAAGTCTGT
CTCTACAATGCAAggaaaatatgaagaaaaactttcaagaaTCGAACCAA
TCAACAAGTCGTAtgaagatgaaatgaaaaaagtttattcaaaattttcg
aaagctGAAGAAGAACGTAAAGATTTTTTGCAAAGGATAATGGTGGAATT
TCATAAAGCAGTCAACGTGTCGGAAGATCCTAGGCTTAAAGAATGTTTCG
AGAACCAAATCAATGCAGCATACGCAGGAAAAAGTAGCTATGACGTCACT
TGGTATTCCGAAAACTATGGTGCTGACATGGCAAGAAACTGGCCCAAATT
TGAGGAATTAGGAGACCTGCCAGATCTCCCTGCACCAGTGCGTGCTGTGG
AGCCTCCAGAGAACCAGCGTTTCAGTAGCAATTCATCTATTCCACGGTCG
GGCTCCAGTCAGTTCCAGCAACAAACCAATACATTGTATGAACCAGCTTC
TCAACAGAGTGTTGTACCCGTACAATCACAACAGGTGGCTTCTTATCAAC
CGAACAATGAACCAGAAGAATCGAATCCTTTCATGAATGGCGATGATGAT
GACGATGTAGATGGAGCCGAATGGGATAACCCACCACCACTGCCAGCAGA
AGGAGTTCCAGTACGCGCTCTTTATGATTACGATAAGGTCGAGGATGATG
AACTCTCTTTCAAAGCAAATGATATTCTCACCAAGTTGAGTGAAGAAGAC
GAACAAGGGTGGTGCAGAGGGCGCCTCGATGGCGTCGAAGGATTGTATCC
CGCCAATTATGTTGAACTCATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002755XLOC_002755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004863-exon-sc0000049-1491911889:349829..349869TCONS_00004863-exon-sc0000049-1491911889:349829..349869Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1510915933:349829..349869TCONS_00004863-exon-sc0000049-1510915933:349829..349869Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1575043694:349829..349869TCONS_00004863-exon-sc0000049-1575043694:349829..349869Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1491911889:350030..350630TCONS_00004863-exon-sc0000049-1491911889:350030..350630Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1510915933:350030..350630TCONS_00004863-exon-sc0000049-1510915933:350030..350630Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1575043694:350030..350630TCONS_00004863-exon-sc0000049-1575043694:350030..350630Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1491911889:353998..354224TCONS_00004863-exon-sc0000049-1491911889:353998..354224Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1510915933:353998..354224TCONS_00004863-exon-sc0000049-1510915933:353998..354224Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1575043694:353998..354224TCONS_00004863-exon-sc0000049-1575043694:353998..354224Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1491911889:354530..354650TCONS_00004863-exon-sc0000049-1491911889:354530..354650Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1510915933:354530..354650TCONS_00004863-exon-sc0000049-1510915933:354530..354650Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1575043694:354530..354650TCONS_00004863-exon-sc0000049-1575043694:354530..354650Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1491911889:355310..355569TCONS_00004863-exon-sc0000049-1491911889:355310..355569Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1510915933:355310..355569TCONS_00004863-exon-sc0000049-1510915933:355310..355569Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1575043694:355310..355569TCONS_00004863-exon-sc0000049-1575043694:355310..355569Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1491911889:357332..357565TCONS_00004863-exon-sc0000049-1491911889:357332..357565Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1510915933:357332..357565TCONS_00004863-exon-sc0000049-1510915933:357332..357565Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1575043694:357332..357565TCONS_00004863-exon-sc0000049-1575043694:357332..357565Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1491911889:357886..358815TCONS_00004863-exon-sc0000049-1491911889:357886..358815Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1510915933:357886..358815TCONS_00004863-exon-sc0000049-1510915933:357886..358815Clytia hemisphaericaexon
TCONS_00004863-exon-sc0000049-1575043694:357886..358815TCONS_00004863-exon-sc0000049-1575043694:357886..358815Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004863-proteinTCONS_00004863-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:349829..358815 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.9356 32.2115 14.738 10.8721 19.7667 12.8937 18.8241 19.9274 15.8227 16.2737 18.5831 10.3942 28.9455 27.182 18.2999 20.119 35.1242 29.7616 26.562 26.3276 40.0267 40.8379 31.288 33.2757 30.9909 35.0744 36.8217 41.6517 45.3779 54.6935
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR001060FCH_dom
IPR031160F_BAR
IPR027267AH/BAR-dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00004863 vs. Swiss-Prot (Human)
Match: PACN1 (Protein kinase C and casein kinase substrate in neurons protein 1 OS=Homo sapiens GN=PACSIN1 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.783e-68
Identity = 162/453 (35.76%), Postives = 239/453 (52.76%), Query Frame = 1
Query:  139 NFWEIGNYTRCCKRITDSNNLCDDLIKMYTERAEIEAKYSKKLTDWHERWSKHLEASPAVYATMKTAHLGTLKEAHDRAIIHMDCWTKIHNQVVETIKREKESKYHKAFV-GIKEYKELDEEFGKAQKPWATAFGKVQRAKKNYHSACKSRDSA---KLNLDQNKDVAPPXXXXXXXXXXXXXXXSVSTMQGKYEEKLSRIEPINKSYEDEMKKVYSKFSKAEEERKDFLQRIMVEFHKAVNVSEDPRLKECFENQINAAYAGKSSYDVTWYSENYGADMARNWPKFEELGDLPDLPAPVRAVE----PPENQRFXXXXXXXXXXXXQFQQQTNTLYEXXXXXXXXXXXXXXXXXYQPN----NEPEESNPFMNGXXXXXXXGAEWDNPPPLPAEGVPVRALYDYDKVEDDELSFKANDILTKLSEEDEQGWCRGRLD-GVEGLYPANYVELM 1458
            +FWE+GNY R  KRI D + LC+DL+    ERA+IE  Y ++LTDW +RW + +E  P  Y +++ A    + EA   + +H +    + N+ +E +K  ++  YHK  + G KE KE ++ F KAQKPWA    +++ AKK YH ACK    A   ++N    + V  PE+ KKL++ ++K ++ V   Q KYE+ L  +      Y + M++V+ +  + EE+R  FL+ ++++  + +N++E+      +     A     +  D+ W+    G  M  NWP+FEE    PDLP      E      E    ++ +    S S    + + + Y+                  QP     ++ E  NPF      +   GA   NP    ++GV VRALYDYD  E DELSFKA D LTKL EEDEQGWCRGRLD G  GLYPANYVE +
Sbjct:   18 SFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQ-YGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVT-PEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWPQFEEWN--PDLPHTTTKKEKQPKKAEGVALTNATGAVESTSQAGDRGSVSSYDRG----------------QPYATEWSDDESGNPFGG---SETNGGA---NPFEDDSKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 444          
The following BLAST results are available for this feature:
BLAST of TCONS_00004863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PACN18.783e-6835.76Protein kinase C and casein kinase substrate in ne... [more]
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