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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005501 ID=TCONS_00005501|Name=TCONS_00005501|organism=Clytia hemisphaerica|type=transcript|length=2075bp
CTTTCCTCTCCCCAGGGTCTCAAAAGTCGGGAATCGCCGCCGCTAGTTGT
CAAGATGGGAAATATGGGTGTTTCAAGATTTTACTCTTACTTGCTCTTGT
AGcaaaaggactaaaaaattttattggtgTTTAAACAGCCTGCATCTGAT
GAACAAATCATGAAGGAATACAAAGTTGTTGTTCTTGGTTCTGGTGGTGT
TGGTAAAAGTGCATTAACAGTTCaatttgtatcaaatcaatTCTTGGAAA
AGTATGATCCAACCATTGAGGACTTTTATAGAAAAGCTATTGAAGTAGAT
CATTCGCCCTCCATATTGGAAATCTTAGATACTGCAGGAACTGAACAATT
TGCCTCAATGAGAGATTTGTATATTAAAAACGGGCAAGGATTTTTGCTTG
TGTACTCCATTACCAATAAACAAACATTGCAAGATGTGGCACCTATGAGA
GACCAAATAGTACGTTTGAAAGGCCAGGAAAATGTTCCAATGATTTTAGT
AGGAAATAAACGAGACATTTATGATGAACGTGAAGTAACACAGGAAGAAG
GTGAACAACTGGCAGAGCGTTGGCGATGTCCATTTTTTGAGACATCAGCC
AAAACAACCCATAACGTCAATGATGTATTTGCTGAGATTGTACGACGTAT
TAATATTGTCAATCAAAAACAAGGTAAACGAAAATGCTGCAATATTCTAT
AGATTATATTATGTTTCACTAAATTATTAGATACGTTTTAACAATACTCA
AAATGAATGGTATATATATATCATGTTTTCTTTGGATATGAGTGAGAATG
GTTATTCAATGGCTCCTATTCTATGTATTGGATCAACctttaaatttgaa
atactGGGCTTTGCAAAAGCCCTATAGATTACGCAACAAAATGTATTTTA
GATGGTAGAATATTGTGACAACAGAGATTATTGATatagttttaaaaaaa
tgataatataCAAACGATAATGTGTACTTTTAGATCATGTTACTATTTGA
TGATAGTTTGAACTGTCacataaaaattgataaacaaAAGGATATTATGT
ATGGTAGATCATGGACAGTTTACATATGAATAAAATGATCCTTTTTGTTT
TCTGGCTTTGGCTGATTTTAGTCTCTTATTATGTAATTAGATGACACATT
GCCTTGCTAGATGACACATTGCCTTGCTAAAAGTGATTAGGATGTAAttg
ttttctcttttaaaaAGGAAAAGACCGTGCATCAATTCATTCTTGTCAAA
ATAAATGATTTAATTGATAAATTGACAGAATGCCACTTTGAAATTCCTTT
TGTCACAAGTGTTGTGGTTTGTTGTACAAATAAAACAAgcttttatctat
ttttttgcttttaactCAAGACCATCAAAAGAATGATAAAACCTTAAATA
TCTAAGAGATTTGCTATAAGCTTAATTCATGATAGAAGCTTCTTTCATTT
CGtctaacttttttatttatttttctattagATCAATATAAAATAGCATC
ATACACACTTTCTTccatttatgaaatattttttgccagGCTTCTatgtt
taatttgaaaaatcatcGTTATCTACACGAAGgctatttttcatgtttta
taatgaaaattttgtGGCCACAATATTAAGATAAACTTTAAgggaaaaaa
aaacttcaattgTACACGAAATTCAGACTTTTATcttatagcaatttttt
acttttccctTTCTCACACAAGGTTCACCTATTTCCCTCTCTCCCTAGTG
TTTGACACAAAGTCGGAGTCAAAACAAGACATTTCAGAATAAAGCACcgt
tttttgattttatgcCACTTTTCACCTGCAActgtattttattaattttt
gtatatttttttctgaaacagtattttattaaaatatataaTCAGAATTT
CTCTCttataaaatacttttaaatgaTCTtcgattttttgttgttttatt
gaataattttttttgtttttatgaaatACTATCACTTTTAAGAAATCGTT
CTTCATAAATTTGGACCCGTCCCCCATTAAGATTTTGGGAGCACTACACT
ATTTTAGattttctgaagatttttc Run BLAST on NCBI protein sequence of TCONS_00005501-protein >TCONS_00005501-protein ID=TCONS_00005501-protein|Name=TCONS_00005501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MKEYKVVVLGSGGVGKSALTVQFVSNQFLEKYDPTIEDFYRKAIEVDHSP
SILEILDTAGTEQFASMRDLYIKNGQGFLLVYSITNKQTLQDVAPMRDQI
VRLKGQENVPMILVGNKRDIYDEREVTQEEGEQLAERWRCPFFETSAKTT
HNVNDVFAEIVRRINIVNQKQGKRKCCNIL Run BLAST on NCBI transcript from alignment at sc0000053:712181..716528- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005501 ID=TCONS_00005501|Name=TCONS_00005501|organism=Clytia hemisphaerica|type=transcript|length=4348bp|location=Sequence derived from alignment at sc0000053:712181..716528- (Clytia hemisphaerica)
CTTTCCTCTCCCCAGGGTCTCAAAAGTCGGGAATCGCCGCCGCTAGTTGT
CAAGATGGGAAATATGGGTGTTTCAAGATTTTACTCTTACTTGCTCTTGT
AGGTAGGTATGTCTATGTTTTTCTTTAATTGTCTCATTTGACCTGAGTTT
TTTTTCTGTGAAATATCTGTGATTGGATATCAGCATTCATATATATTATG
ATTTTTGTTTATAAACAATAAAAAGGAAAGTTTTCAACAAATATATTGTG
TACCATTTCCAGAATGGTAGGTTTAGGTTGTCACACACAAAATTAGTTAA
CCCCCTCCTCAAGACAGAGAGTTATTACATTCAGGTAGCCCATGATTGTA
CCTCTGATAGACCCGATACCGATAGTCTCTGATCTCAAGTAAGACACAAA
GTATCCTCAAAATGCACCAGAGGTGATATATATGGCTGGTGAGTGTCCTG
GGCTTTTTCTGACAGTCTAGACAGTGTGCGAGAAGTTTATATTGAAATCT
GCAACAAAAATGAAAGTGGTCTCTTCTACTGATTGCTTCCCAGTGCTCCT
TTGCAGCCCCGGGGGGGGGGTACTAGGGTTGCGAGCTGACGGGGGGTGCC
ACCCGACTTTTGAACTTTGGACCCTTACCGGGACTAAAAAGGAGAAAACA
AAGGAAAATTTTGGGAATTTTGCGACCCTTAGCGGGACTAATTTGACCAA
TTTCGCCCAAATTTCGATCTTTCAGGGGGTAAAAAGTTGAAATTTTCCTA
TTTTTCCTACCCTTAGTAGGACTGAAATTTGATTTTCTGATTTTTCCGAC
CCTTAGCGGGACTAATTTGACCAATTTCGACCAAATTTCGATCTTTCAGG
GGGTAAAAAGTTGAAATTTTCCTATTTTTCCGACCCTTAGTANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCCCCGGGTTTGCAGCTGT
TTATCAAAATTATTCCATCAATGAGTATAGTTTGCCGCAGCGCCCTTCTT
TTTGGCACCCATGGCCTCTCTCAGTGCCTTGCACGACGGGCGGCTGTAAA
ATCCCACCCTTCATATATTTGTTTCAATCCATGATCCGTGGCTTAGGTAT
TTTCTCATCTTCAAATTACTGAAGAAAGCGGGAATTTGATCCAAGAGTTA
GACTGTCAACAAAGTTTCGAAAAAAATCATTGAATAAAAGAAGAACTTAA
AATCTTAGATATTTTCATTTTGAAGAATAGGTGCAAAAAAGTGAAACATA
GAAAAGTTTCATTTGTCATTGCTTTAATCAAAATGGGGGATTTGGAAAAT
TTTCTATGTTTAGTTTTTTGCACAAACCTCTGTAACTATGGGTGAGCACC
CCGTTGCGTTGCTAAGATGTTGGCTTGAAATAGAAAATGAAACTACTCAA
AACGAAAGTAAAATTGGCCCGTACCTAAAATCCCGACATTTTGATATACG
AGGTGTTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTG
ACCAAAACAATCGAGCATTTTTACAAAATGCCCTCTACTAAATGGCACTG
TCATCATTTGACAATCAAACAAAGGATTTTCTGTCATGAACCTTGTAAAG
ATTCCAGCAACTTACATTGAAATGATCTGCTGCAGCTAAGTTCTACCACT
TTGCGCAGTTTGAGGATCAAGCAAAGTTAACAAAAAGCCTTTTCCCCTGC
AGAACACCCGTTAGCTCTCGCAAGGACGGACAAACTTTAATCTGTGAATC
ATTTTCTCAAGTGAAGAGTATGCAGAGCGATTCTAGCTTTACGATAGTGT
AAACTTAAAAAAACTGATTTTTGTCCCGCTTTTGCCAGACCTTAGCTTTA
AAGTACTTGCGCTAAAGTTCAAATATGCGTTTCCTGTAAATCTTATAGGA
CTAGTTAGGGCTATACTATAGGTATATATTATGTTGTATATTGGTCTAAT
GTCAATACTCCTCAATTCAAGATGACAGATGGAAAGGTGAAAAGGTCCAT
TCCCTGACTTTGCACCATAATGATTGCAAATGTACTTTTTTAGGGACGCT
GTGTGGAAAGGCCTATTTAAGAAATATGAAATGCAGTAAGATGGGGTCAT
TATACCTGGATGTATAAGATGTCATAAGAAAATCCCACAATATCAAAATG
TCATTATTCATATTATTTATTTTAGCAAAAGGACTAAAAAATTTTATTGG
TGTTTAAACAGCCTGCATCTGATGAACAAATCATGAAGGAATACAAAGTT
GTTGTTCTTGGTTCTGGTGGTGTTGGTAAAAGTGCATTAACAGTTCAATT
TGTATCAAATCAATTCTTGGAAAAGTATGATCCAACCATTGAGGACTTTT
ATAGAAAAGCTATTGAAGTAGATCATTCGCCCTCCATATTGGAAATCTTA
GATACTGCAGGAACTGAACAATTTGCCTCAATGAGAGATTTGTATATTAA
AAACGGGCAAGGATTTTTGCTTGTGTACTCCATTACCAATAAACAAACAT
TGCAAGATGTGGCACCTATGAGAGACCAAATAGTACGTTTGAAAGGCCAG
GAAAATGTTCCAATGATTTTAGTAGGAAATAAACGAGACATTTATGATGA
ACGTGAAGTAACACAGGAAGAAGGTGAACAACTGGCAGAGCGTTGGCGAT
GTCCATTTTTTGAGACATCAGCCAAAACAACCCATAACGTCAATGATGTA
TTTGCTGAGATTGTACGACGTATTAATATTGTCAATCAAAAACAAGGTAA
ACGAAAATGCTGCAATATTCTATAGATTATATTATGTTTCACTAAATTAT
TAGATACGTTTTAACAATACTCAAAATGAATGGTATATATATATCATGTT
TTCTTTGGATATGAGTGAGAATGGTTATTCAATGGCTCCTATTCTATGTA
TTGGATCAACCTTTAAATTTGAAATACTGGGCTTTGCAAAAGCCCTATAG
ATTACGCAACAAAATGTATTTTAGATGGTAGAATATTGTGACAACAGAGA
TTATTGATATAGTTTTAAAAAAATGATAATATACAAACGATAATGTGTAC
TTTTAGATCATGTTACTATTTGATGATAGTTTGAACTGTCACATAAAAAT
TGATAAACAAAAGGATATTATGTATGGTAGATCATGGACAGTTTACATAT
GAATAAAATGATCCTTTTTGTTTTCTGGCTTTGGCTGATTTTAGTCTCTT
ATTATGTAATTAGATGACACATTGCCTTGCTAGATGACACATTGCCTTGC
TAAAAGTGATTAGGATGTAATTGTTTTCTCTTTTAAAAAGGAAAAGACCG
TGCATCAATTCATTCTTGTCAAAATAAATGATTTAATTGATAAATTGACA
GAATGCCACTTTGAAATTCCTTTTGTCACAAGTGTTGTGGTTTGTTGTAC
AAATAAAACAAGCTTTTATCTATTTTTTTGCTTTTAACTCAAGACCATCA
AAAGAATGATAAAACCTTAAATATCTAAGAGATTTGCTATAAGCTTAATT
CATGATAGAAGCTTCTTTCATTTCGTCTAACTTTTTTATTTATTTTTCTA
TTAGATCAATATAAAATAGCATCATACACACTTTCTTCCATTTATGAAAT
ATTTTTTGCCAGGCTTCTATGTTTAATTTGAAAAATCATCGTTATCTACA
CGAAGGCTATTTTTCATGTTTTATAATGAAAATTTTGTGGCCACAATATT
AAGATAAACTTTAAGGGAAAAAAAAACTTCAATTGTACACGAAATTCAGA
CTTTTATCTTATAGCAATTTTTTACTTTTCCCTTTCTCACACAAGGTTCA
CCTATTTCCCTCTCTCCCTAGTGTTTGACACAAAGTCGGAGTCAAAACAA
GACATTTCAGAATAAAGCACCGTTTTTTGATTTTATGCCACTTTTCACCT
GCAACTGTATTTTATTAATTTTTGTATATTTTTTTCTGAAACAGTATTTT
ATTAAAATATATAATCAGAATTTCTCTCTTATAAAATACTTTTAAATGAT
CTTCGATTTTTTGTTGTTTTATTGAATAATTTTTTTTGTTTTTATGAAAT
ACTATCACTTTTAAGAAATCGTTCTTCATAAATTTGGACCCGTCCCCCAT
TAAGATTTTGGGAGCACTACACTATTTTAGATTTTCTGAAGATTTTTC Coding sequence (CDS) from alignment at sc0000053:712181..716528- >TCONS_00005501 ID=TCONS_00005501|Name=TCONS_00005501|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000053:712181..716528- (Clytia hemisphaerica)
ATGAAGGAATACAAAGTTGTTGTTCTTGGTTCTGGTGGTGTTGGTAAAAG
TGCATTAACAGTTCAATTTGTATCAAATCAATTCTTGGAAAAGTATGATC
CAACCATTGAGGACTTTTATAGAAAAGCTATTGAAGTAGATCATTCGCCC
TCCATATTGGAAATCTTAGATACTGCAGGAACTGAACAATTTGCCTCAAT
GAGAGATTTGTATATTAAAAACGGGCAAGGATTTTTGCTTGTGTACTCCA
TTACCAATAAACAAACATTGCAAGATGTGGCACCTATGAGAGACCAAATA
GTACGTTTGAAAGGCCAGGAAAATGTTCCAATGATTTTAGTAGGAAATAA
ACGAGACATTTATGATGAACGTGAAGTAACACAGGAAGAAGGTGAACAAC
TGGCAGAGCGTTGGCGATGTCCATTTTTTGAGACATCAGCCAAAACAACC
CATAACGTCAATGATGTATTTGCTGAGATTGTACGACGTATTAATATTGT
CAATCAAAAACAAGGTAAACGAAAATGCTGCAATATTCTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005501-exon-sc0000053-1575043694:716427..716528 | TCONS_00005501-exon-sc0000053-1575043694:716427..716528 | Clytia hemisphaerica | exon |
| TCONS_00005501-exon-sc0000053-1575043694:712181..714153 | TCONS_00005501-exon-sc0000053-1575043694:712181..714153 | Clytia hemisphaerica | exon |
| TCONS_00005501-exon-sc0000053-1510915933:716427..716528 | TCONS_00005501-exon-sc0000053-1510915933:716427..716528 | Clytia hemisphaerica | exon |
| TCONS_00005501-exon-sc0000053-1510915933:712181..714153 | TCONS_00005501-exon-sc0000053-1510915933:712181..714153 | Clytia hemisphaerica | exon |
| TCONS_00005501-exon-sc0000053-1491911889:716427..716528 | TCONS_00005501-exon-sc0000053-1491911889:716427..716528 | Clytia hemisphaerica | exon |
| TCONS_00005501-exon-sc0000053-1491911889:712181..714153 | TCONS_00005501-exon-sc0000053-1491911889:712181..714153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:712181..716528 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00005501 vs. Swiss-Prot (Human)
Match: RAP2B (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 8.024e-75 Identity = 128/183 (69.95%), Postives = 150/183 (81.97%), Query Frame = 1
Query: 160 MKEYXXXXXXXXXXXXXALTVQFVSNQFLEKYDPTIEDFYRKAIEVDHSPSILEILDTAGTEQFASMRDLYIKNGQGFLLVYSITNKQTLQDVAPMRDQIVRLKGQENVPMILVGNKRDIYDEREVTQEEGEQLAERWRCPFFETSAKTTHNVNDVFAEIVRRINIVNQKQGKRKCCNIL*II 708
M+EYKVVVLGSGGVGKSALTVQFV+ F+EKYDPTIEDFYRK IEVD SPS+LEILDTAGTEQFASMRDLYIKNGQGF+LVYS+ N+Q+ QD+ PMRDQI+R+K E VPMILVGNK D+ EREV+ EG+ LAE W CPF ETSAK +V+++FAEIVR++N Q G CC+ I+
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSACVIL 183
The following BLAST results are available for this feature:
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