TCONS_00005650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005650
Unique NameTCONS_00005650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005650 ID=TCONS_00005650|Name=TCONS_00005650|organism=Clytia hemisphaerica|type=transcript|length=1676bp
GTTGGCCTCACCGCAAGTAGAAGTAAGACTTTCTACAAAAATCCTATCCC
CGGGCCATATAATTAGCCAATGTAGCTTCTTAGTCACGGAAACGGCTAAT
TAATTGGTTGATTTATTATTAGCTTTTGAAGAACGAGAAGACATTGAAGG
ACGAGGTTGAGATCATGAAATGTAAACTGGCCGTCGTCACTGAAGATGTG
GTTGCACAAAGCAAGAAATTCTCGGATGAAGATCACTTAAAGGAATGCAA
GAAATTAGAAGCCAAAAATGATGAACTGAAAAAGACTATCAACAACATGA
AACAGGAAGGTGACGCGCTACTTGGTGAGATGGAATTCACCGGGCAAGCT
TTTGAAGAGATGCAGGACCAAAATATTCAACTGATGCAACAACTACGCGA
AAAAGATGATGCCAACCTCAAACTCATGTCCGAGCGTATCAAGTCAACAC
AAATCCAGAAGTTATTACGTGAAGAAAAAGAAGTTCTGTTAGAGAAAATT
TCTGCTCTCACCTCTCGACAATCGTCCATCGATGATCTCGTTAAAAGATA
TGAGGAACGAGAGAAATCACTTCAGAGCACGCTGACCGTTTTGGAGAAGG
AGAATCTGTTACGCCAACAGGCTGGTGAATGTCACAAGAGGAAAGCCGTT
GAAATCGGTACTCAATGTCAAGAGATGGCATTCCGAAATGAGACATTGTC
CAAACAGTGCGATGAGCTTACGAAATCAACACAAGATCGCGGTAATCGTT
TGGAAGAAGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAAACATAGGT
TTGAAAAAGAAACTGGACAAAGCCAAACGAATGGAATACCTCGGTGCCTC
TGATGAGATCCTTGTGGAAGAAGTTAAAATGTACAAGTCGAAACTGATGT
GTCCGATTTGCAACACCCGTCCGAAAGATGCTATTCTCACCAAATGTTTT
CACGTTTTCTGTATCGATTGCTTGAAAACGAGATACGATACTCGACAAAG
AAAATGTCCCAAGTGTAACGCTACCTTTGGGAACAACGATTTCCATAAAA
TGTACATGTGAGGGGACCTGTAGAAAGGGTCTTATATGGCTGATATAGAT
ATGGCTTTAAATAGGCATTGTTCACACTTAAGTATCAAAGAACACAAAAT
TATCACATTCTTCTATATTCAATGCTCATTACAGTACTTATTTCGCCAAA
CTAAAACCACATTTTATTTGTAGAGCATTTTCACGCgtttttagtattat
actatagatttttttatttgtgtCTTTTGTGAGGATTCACTCCCTTCGAT
GGCAATTGTAAGGGTCAATCGGGGAAAATTGACTATGCATAGCATAGCGG
GTGCCACTGGGCTATATAACCAAATCTTCAAAAACACCAACATAGTTATG
TTTTTATCGCTTTTATTAGCAATGCTAAACAAATTGGCCATTTTTCGATC
TACCAATAATGTCCCATTCCTGCCAATCATCTATTTTATTTACCATTCCA
CGCGAAACATCAACTATTGCAAAATGATCGAATCTGAAATTGCCATGGAA
ATATGCAATAGCTGtcaactttatttttcatttttaaaatcatttaattt
tgtaaatattacTCTGTTTTTCTATGGAAAGAACATCTTCTAAATTTAAG
CCACTTAtttcacacccccttctcac
Run BLAST on NCBI

protein sequence of TCONS_00005650-protein

>TCONS_00005650-protein ID=TCONS_00005650-protein|Name=TCONS_00005650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MKCKLAVVTEDVVAQSKKFSDEDHLKECKKLEAKNDELKKTINNMKQEGD
ALLGEMEFTGQAFEEMQDQNIQLMQQLREKDDANLKLMSERIKSTQIQKL
LREEKEVLLEKISALTSRQSSIDDLVKRYEEREKSLQSTLTVLEKENLLR
QQAGECHKRKAVEIGTQCQEMAFRNETLSKQCDELTKSTQDRGNRLEEEI
FKFNRIQEENIGLKKKLDKAKRMEYLGASDEILVEEVKMYKSKLMCPICN
TRPKDAILTKCFHVFCIDCLKTRYDTRQRKCPKCNATFGNNDFHKMYM
Run BLAST on NCBI

transcript from alignment at sc0000054:438069..443069-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005650 ID=TCONS_00005650|Name=TCONS_00005650|organism=Clytia hemisphaerica|type=transcript|length=5001bp|location=Sequence derived from alignment at sc0000054:438069..443069- (Clytia hemisphaerica)
GTTGGCCTCACCGCAAGTAGAAGTAAGACTTTCTACAAAAATCCTATCCC
CGGGCCATATAATTAGCCAATGTAGCTTCTTAGTCACGGAAACGGCTAAT
TAATTGGTTGATTTATTATTAGCTTTTGAAGAACGAGAAGACATTGAAGG
ACGAGGTTGAGATCATGAAATGTAAACTGGCCGTCGTCACTGAAGATGTG
GTTGCACAAAGCAAGAAATTCTCGGATGAAGATCACTTAAAGGAATGCAA
GAAATTAGAAGCCAAAAATGATGAACTGAAAAAGACTATCAACAACATGA
AACAGGTTGGATTTAAAGATATTTTTTATTATTTAGGGGCTGCTCATATG
GAGGTGGGCCGGCCCAGTTTTAGCCGGGTTGGCCCACTTAGGTGAGATCG
AATTTCCTTGTGTTCAAATGGGAGTTGAGTCAGCCCGGTTGAATGGGATT
AAATTAGCCCGCCTCTCTATGAACAGCCTCTTAAAATAAAGGCGTGCCTC
TATGCTGACAAAGCTGAGTAAACTAAAGCTCGTGCACGGGGCTGAAAAGG
GAGAAAGATGTTTNAGCTGAGTAAACTAAAGCTCGTGCACGGGGCTGAAA
AGGGAGAAAAATGTTTTTTTTTCTATTGTTTAAAAATGATGTGTGTAAGT
AAATGGTGGGAAATGCGATAAATGATGTCTTGTTATGGTTTGAGTTGTTT
TAGTTGTTCATAACAATTGGCGGTGCTAGAAAATTATTAAGGAAAGTGTG
AATGCTAAGTAAGGACCATTTTGAACTCAAAATCCTGTCAGTTTGAGTAC
GATGGACGTCAAATTTTGCCCCTTTTTTTTCTTCAATGATGGGCTAGGAA
TTTACCCCTCGTAGTAACTAAGGCTGATTGGAAGATTTTCAATTGTGATT
TCTCTCATTTTTTTTGTCACATTTTTCCTTACAGGAAGGTGACGCGCTAC
TTGGTGAGATGGAATTCACCGGGCAAGCTTTTGAAGAGATGCAGGACCAA
AATATTCAACTGATGCAACAACTACGCGAAAAAGATGATGCCAACCTCAA
ACTCATGTCCGAGGTATGTTGGCTTTCTGTACTTAAAAGTGATGTTCTGC
TTTCTGTAATTAAACTACACATATGTAGTGTATATACACTTAAGCTATTC
TATGAGAATAATCAATAAAGTGCTATAATTCTATCTATGGCAGCAACCTG
AGAGAAAAGAAATTTTTTGATGATTTGGCGAGTCTCCAATATTGAACTAA
AGCCCAAATGAGGTCAGAAATTATTCTCCTGGATACAAAACGAAACCACT
TGTTTTTTACTCCAAGATGTAAAATTCAACCTAATTTTCTCCCACTTTCA
TAGTCCAACTTCTTCGGGGCTTTATATCATGGTTCAATACACCTTTTTGA
CCGTAGTCGCCGATAGCCGCGCGGGCATTTTTTGTCCGCTTTAACTTTAT
CCCACTAAAACCGTCCCAGTCCTTTTTTCGCACCTATAGACAATAGAAAA
ATGTGTCAAAAAAGGATTGGGTCGAGTTTAGGGGAATGATAAAATAATTA
AGTGGCACGCGCCTGACTGCTACGGTCGAAAAGGTGATTGAGAAGACGGT
TTGACGACATAATCTTTGGAAAACTTTTAAATCATAGCGTATCAAGTCAA
CACAAATCCAGAAGTTATTACGTGAAGAAAAAGAAGTTCTGTTAGAGAAA
ATTTCTGCTCTCACCTCTCGACAATCGTCCATCGATGATCTCGTTAAAAG
GTAGTTACAGTGAAGTATATAGAGAGGATTTTCCGATTTTCCGAANAGTT
AAAAGGTAGTTACAGTATTAAAATTTCTTCCGTCTCAGTGAAGTATATAG
AGAGGATTTTCCGATTTTCCGAATAATTTTACAAAATTCTCCAAAATTTC
AAGAAATTGTGCTAATTTAATGTGTACAATCCAATTTCTGTCGCAGATGT
AAAATCTTGCTTTGACCTCTGGTAGTATCATATACTCTGGTTCGGGTCTG
AGAATAGGTAAAAAGTGTTTTTGAAAAAGCAATTGTATTATTTGATCAAA
TTATTAATTAAACTGATTGCTGAATATTTTAAGATTCTTTAGTCTGTATA
TTAAACACGCAGCTCACGTTATTCATGACGTAATGTTTTATATGGAAGCA
CCCAAAAAAGACCGGATTTTGCCACTAATAAAACTAGTTGCAAACACAGC
GTCTATTTTGGGTGCTTCCCCATCAGGCCCGGCGGAACAACTGTAAAAGC
GGGGAGGCTGAAGGCTCAAAATGAGATAAAATTCGCTAGGAATTTGAGAA
ATAAATCTCATTTACCCAAAAGTAGAGAGGCTCACCCCGATTCCGCTGGG
CTTGCCCATAAGACATTTCGTCATGAATATCATAAATGGAGGAAAGTCCA
TACTGATTAGTCTGCTAACACTCAAGATCTAGAATGATCTTTTTATCATC
TCTCCACCATCAGATATGAGGAACGAGAGAAATCACTTCAGAGCACGCTG
ACCGTTTTGGAGAAGGAGAATCTGTTACGCCAACAGGCTGGTGAATGTCA
CAAGAGGAAAGCCGTTGAAATCGGTACTCAATGTCAAGAGATGGCATTCC
GAAATGAGACATTGTCCAAACAGTGCGATGAGGTAATTTCTCTTGAAGTG
AAGCCGACCTTTGTTTTAGAATATTTAGAGGGTGTAATGACTCAAGTATG
TTTTGATCGACCTATTTTACTCAAAAGTAAAGGCTATTATGTTCATGTGT
GAACCACCGGGGGGGGGCACCCATATGGGCTGACCCACGCACATCATGTG
CCGCCCTCAAGGGTAGGTTTTTCGAGACCCTCGGAATGCACTGTAAAGGT
GTGTTTCGGGAGTGTTGAATTACAAGTTTGACATTAAAGATCTGATGTAT
CTTTTAATTTTGACTCTCGCCCATTTTGATTTGTTTTGCACATTGTGTCA
ACATCTCTGGCTCATTTTCAGGTGGCTTCAGCAAAATAAGATTTGAAATC
AAACTACACTGTAAGGGTCAAAACGTTTTGAAAGCCATTTTTTTGGCGGT
GTATGCCGTCGTTTAGAAATCGAGTGCCCCTCCCCGGTGAACCATGACAA
CGCTTTTTAGAATAATCATCTAAAGGTAAAAAAGTTAAGGCAAAAGTTCG
AGAGAATCAAATCATAGAACAAAAATCAAAATAATAAATAATCATATGCA
TGTTTTTCGAGAGATTTCCACTGATATTTATAAAGTCTTCTTCAATGAAT
GAAATAATGGACTTTGAATTTTAGCTTACGAAATCAACACAAGATCGCGG
TAATCGTTTGGAAGAAGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAA
ACATAGGTTTGAAAAAGAAACTGGACAAAGCCAAACGAATGGAATACCTC
GGTGCCTCTGATGAGATCCTTGTGGAAGAAGTTAAAATGTACAAGGTATG
GTTCAATTTTCGTGGCAACCCAGCTCCAGCTAGCACACAACGTCCAGAGA
ACGTTAGATGAACGTCGAAACAACGTCTTATGTCCGATGGGAATCTCTAT
AGATATAGTACAAATTTCGTGGTAACCCAGGTCCAGCTCTAGCACACAAT
GTCATAGCCTGTCATAGCAACATCTATCTAACGTCCAGAGAACGTTAGAT
GAACGTCTAAACAACGCTATGTGCCCGCTTTTCTAGGGCAGCAAGTACAT
TTTGTAAGCTCAGTGCTGGTTTAGTTTGTGACCGTGTCTAACTCCGAGGA
CAAAAGTAACCATGGCAATCACTCAGAATCTATTTACCTCTTCTATAATG
ATTTTTGGTCAATTATGTCCCTTATCTGCCAAATTTATTTTTCATCGATC
ATTTGGCAAATTAAATTCCCACCCCACTTATTGTCTGAATCACAGACCTC
TACGAAATACCAGGCACTGTATATGAGTGGATGTTAGTGGATGCTAACAG
CTTAGCTTTTTCCCGGACAAAAGGTTTGTAGACTTTAAGAAAAATCCCTT
CCCTTCAATGTTGTTTTAGTGTAAGTTGTGGTGATGCCGTGAGGTGATTC
CAGCAAGATTGTTACAACATTGAAGGTAGGGGGACGGGAATTATGGCCGA
TTTAAAGGATTTCTTTTTCAATTTTGAAAAGTCTGCAACCTTTTGTCTGG
GATTGCACATTCCAAGCTAGGAAAATATGAAACTGATATTTTTTTGTATT
CTCTTTTTTTAGTCGAAACTGATGTGTCCGATTTGCAACACCCGTCCGAA
AGATGCTATTCTCACCAAATGTTTTCACGTTTTCTGTATCGATTGCTTGA
AAACGAGATACGATACTCGACAAAGAAAATGTCCCAAGTGTAACGCTACC
TTTGGGAACAACGATTTCCATAAAATGTACATGTGAGGGGACCTGTAGAA
AGGGTCTTATATGGCTGATATAGATATGGCTTTAAATAGGCATTGTTCAC
ACTTAAGTATCAAAGAACACAAAATTATCACATTCTTCTATATTCAATGC
TCATTACAGTACTTATTTCGCCAAACTAAAACCACATTTTATTTGTAGAG
CATTTTCACGCGTTTTTAGTATTATACTATAGATTTTTTTATTTGTGTCT
TTTGTGAGGATTCACTCCCTTCGATGGCAATTGTAAGGGTCAATCGGGGA
AAATTGACTATGCATAGCATAGCGGGTGCCACTGGGCTATATAACCAAAT
CTTCAAAAACACCAACATAGTTATGTTTTTATCGCTTTTATTAGCAATGC
TAAACAAATTGGCCATTTTTCGATCTACCAATAATGTCCCATTCCTGCCA
ATCATCTATTTTATTTACCATTCCACGCGAAACATCAACTATTGCAAAAT
GATCGAATCTGAAATTGCCATGGAAATATGCAATAGCTGTCAACTTTATT
TTTCATTTTTAAAATCATTTAATTTTGTAAATATTACTCTGTTTTTCTAT
GGAAAGAACATCTTCTAAATTTAAGCCACTTATTTCACACCCCCTTCTCA
C

Coding sequence (CDS) from alignment at sc0000054:438069..443069-

>TCONS_00005650 ID=TCONS_00005650|Name=TCONS_00005650|organism=Clytia hemisphaerica|type=CDS|length=5382bp|location=Sequence derived from alignment at sc0000054:438069..443069- (Clytia hemisphaerica)
TCGAAACTGATGTGTCCGATTTGCAACACCCGTCCGAAAGATGCTATTCT
CACCAAATGTTTTCACGTTTTCTGTATCGATTGCTTGAAAACGAGATACG
ATACTCGACAAAGAAAATGTCCCAAGTGTAACGCTACCTTTGGGAACAAC
GATTTCCATAAAATGTACATGTGACTTACGAAATCAACACAAGATCGCGG
TAATCGTTTGGAAGAAGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAA
ACATAGGTTTGAAAAAGAAACTGGACAAAGCCAAACGAATGGAATACCTC
GGTGCCTCTGATGAGATCCTTGTGGAAGAAGTTAAAATGTACAAGATATG
AGGAACGAGAGAAATCACTTCAGAGCACGCTGACCGTTTTGGAGAAGGAG
AATCTGTTACGCCAACAGGCTGGTGAATGTCACAAGAGGAAAGCCGTTGA
AATCGGTACTCAATGTCAAGAGATGGCATTCCGAAATGAGACATTGTCCA
AACAGTGCGATGAGCGTATCAAGTCAACACAAATCCAGAAGTTATTACGT
GAAGAAAAAGAAGTTCTGTTAGAGAAAATTTCTGCTCTCACCTCTCGACA
ATCGTCCATCGATGATCTCGTTAAAAGGAAGGTGACGCGCTACTTGGTGA
GATGGAATTCACCGGGCAAGCTTTTGAAGAGATGCAGGACCAAAATATTC
AACTGATGCAACAACTACGCGAAAAAGATGATGCCAACCTCAAACTCATG
TCCGAGATGAAATGTAAACTGGCCGTCGTCACTGAAGATGTGGTTGCACA
AAGCAAGAAATTCTCGGATGAAGATCACTTAAAGGAATGCAAGAAATTAG
AAGCCAAAAATGATGAACTGAAAAAGACTATCAACAACATGAAACAGTCG
AAACTGATGTGTCCGATTTGCAACACCCGTCCGAAAGATGCTATTCTCAC
CAAATGTTTTCACGTTTTCTGTATCGATTGCTTGAAAACGAGATACGATA
CTCGACAAAGAAAATGTCCCAAGTGTAACGCTACCTTTGGGAACAACGAT
TTCCATAAAATGTACATGTGACTTACGAAATCAACACAAGATCGCGGTAA
TCGTTTGGAAGAAGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAAACA
TAGGTTTGAAAAAGAAACTGGACAAAGCCAAACGAATGGAATACCTCGGT
GCCTCTGATGAGATCCTTGTGGAAGAAGTTAAAATGTACAAGATATGAGG
AACGAGAGAAATCACTTCAGAGCACGCTGACCGTTTTGGAGAAGGAGAAT
CTGTTACGCCAACAGGCTGGTGAATGTCACAAGAGGAAAGCCGTTGAAAT
CGGTACTCAATGTCAAGAGATGGCATTCCGAAATGAGACATTGTCCAAAC
AGTGCGATGAGCGTATCAAGTCAACACAAATCCAGAAGTTATTACGTGAA
GAAAAAGAAGTTCTGTTAGAGAAAATTTCTGCTCTCACCTCTCGACAATC
GTCCATCGATGATCTCGTTAAAAGGAAGGTGACGCGCTACTTGGTGAGAT
GGAATTCACCGGGCAAGCTTTTGAAGAGATGCAGGACCAAAATATTCAAC
TGATGCAACAACTACGCGAAAAAGATGATGCCAACCTCAAACTCATGTCC
GAGATGAAATGTAAACTGGCCGTCGTCACTGAAGATGTGGTTGCACAAAG
CAAGAAATTCTCGGATGAAGATCACTTAAAGGAATGCAAGAAATTAGAAG
CCAAAAATGATGAACTGAAAAAGACTATCAACAACATGAAACAGTCGAAA
CTGATGTGTCCGATTTGCAACACCCGTCCGAAAGATGCTATTCTCACCAA
ATGTTTTCACGTTTTCTGTATCGATTGCTTGAAAACGAGATACGATACTC
GACAAAGAAAATGTCCCAAGTGTAACGCTACCTTTGGGAACAACGATTTC
CATAAAATGTACATGTGACTTACGAAATCAACACAAGATCGCGGTAATCG
TTTGGAAGAAGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAAACATAG
GTTTGAAAAAGAAACTGGACAAAGCCAAACGAATGGAATACCTCGGTGCC
TCTGATGAGATCCTTGTGGAAGAAGTTAAAATGTACAAGATATGAGGAAC
GAGAGAAATCACTTCAGAGCACGCTGACCGTTTTGGAGAAGGAGAATCTG
TTACGCCAACAGGCTGGTGAATGTCACAAGAGGAAAGCCGTTGAAATCGG
TACTCAATGTCAAGAGATGGCATTCCGAAATGAGACATTGTCCAAACAGT
GCGATGAGCGTATCAAGTCAACACAAATCCAGAAGTTATTACGTGAAGAA
AAAGAAGTTCTGTTAGAGAAAATTTCTGCTCTCACCTCTCGACAATCGTC
CATCGATGATCTCGTTAAAAGGAAGGTGACGCGCTACTTGGTGAGATGGA
ATTCACCGGGCAAGCTTTTGAAGAGATGCAGGACCAAAATATTCAACTGA
TGCAACAACTACGCGAAAAAGATGATGCCAACCTCAAACTCATGTCCGAG
ATGAAATGTAAACTGGCCGTCGTCACTGAAGATGTGGTTGCACAAAGCAA
GAAATTCTCGGATGAAGATCACTTAAAGGAATGCAAGAAATTAGAAGCCA
AAAATGATGAACTGAAAAAGACTATCAACAACATGAAACAGTCGAAACTG
ATGTGTCCGATTTGCAACACCCGTCCGAAAGATGCTATTCTCACCAAATG
TTTTCACGTTTTCTGTATCGATTGCTTGAAAACGAGATACGATACTCGAC
AAAGAAAATGTCCCAAGTGTAACGCTACCTTTGGGAACAACGATTTCCAT
AAAATGTACATGTGACTTACGAAATCAACACAAGATCGCGGTAATCGTTT
GGAAGAAGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAAACATAGGTT
TGAAAAAGAAACTGGACAAAGCCAAACGAATGGAATACCTCGGTGCCTCT
GATGAGATCCTTGTGGAAGAAGTTAAAATGTACAAGATATGAGGAACGAG
AGAAATCACTTCAGAGCACGCTGACCGTTTTGGAGAAGGAGAATCTGTTA
CGCCAACAGGCTGGTGAATGTCACAAGAGGAAAGCCGTTGAAATCGGTAC
TCAATGTCAAGAGATGGCATTCCGAAATGAGACATTGTCCAAACAGTGCG
ATGAGCGTATCAAGTCAACACAAATCCAGAAGTTATTACGTGAAGAAAAA
GAAGTTCTGTTAGAGAAAATTTCTGCTCTCACCTCTCGACAATCGTCCAT
CGATGATCTCGTTAAAAGGAAGGTGACGCGCTACTTGGTGAGATGGAATT
CACCGGGCAAGCTTTTGAAGAGATGCAGGACCAAAATATTCAACTGATGC
AACAACTACGCGAAAAAGATGATGCCAACCTCAAACTCATGTCCGAGATG
AAATGTAAACTGGCCGTCGTCACTGAAGATGTGGTTGCACAAAGCAAGAA
ATTCTCGGATGAAGATCACTTAAAGGAATGCAAGAAATTAGAAGCCAAAA
ATGATGAACTGAAAAAGACTATCAACAACATGAAACAGTCGAAACTGATG
TGTCCGATTTGCAACACCCGTCCGAAAGATGCTATTCTCACCAAATGTTT
TCACGTTTTCTGTATCGATTGCTTGAAAACGAGATACGATACTCGACAAA
GAAAATGTCCCAAGTGTAACGCTACCTTTGGGAACAACGATTTCCATAAA
ATGTACATGTGACTTACGAAATCAACACAAGATCGCGGTAATCGTTTGGA
AGAAGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAAACATAGGTTTGA
AAAAGAAACTGGACAAAGCCAAACGAATGGAATACCTCGGTGCCTCTGAT
GAGATCCTTGTGGAAGAAGTTAAAATGTACAAGATATGAGGAACGAGAGA
AATCACTTCAGAGCACGCTGACCGTTTTGGAGAAGGAGAATCTGTTACGC
CAACAGGCTGGTGAATGTCACAAGAGGAAAGCCGTTGAAATCGGTACTCA
ATGTCAAGAGATGGCATTCCGAAATGAGACATTGTCCAAACAGTGCGATG
AGCGTATCAAGTCAACACAAATCCAGAAGTTATTACGTGAAGAAAAAGAA
GTTCTGTTAGAGAAAATTTCTGCTCTCACCTCTCGACAATCGTCCATCGA
TGATCTCGTTAAAAGGAAGGTGACGCGCTACTTGGTGAGATGGAATTCAC
CGGGCAAGCTTTTGAAGAGATGCAGGACCAAAATATTCAACTGATGCAAC
AACTACGCGAAAAAGATGATGCCAACCTCAAACTCATGTCCGAGATGAAA
TGTAAACTGGCCGTCGTCACTGAAGATGTGGTTGCACAAAGCAAGAAATT
CTCGGATGAAGATCACTTAAAGGAATGCAAGAAATTAGAAGCCAAAAATG
ATGAACTGAAAAAGACTATCAACAACATGAAACAGTCGAAACTGATGTGT
CCGATTTGCAACACCCGTCCGAAAGATGCTATTCTCACCAAATGTTTTCA
CGTTTTCTGTATCGATTGCTTGAAAACGAGATACGATACTCGACAAAGAA
AATGTCCCAAGTGTAACGCTACCTTTGGGAACAACGATTTCCATAAAATG
TACATGTGACTTACGAAATCAACACAAGATCGCGGTAATCGTTTGGAAGA
AGAAATCTTCAAGTTCAATCGAATTCAAGAAGAAAACATAGGTTTGAAAA
AGAAACTGGACAAAGCCAAACGAATGGAATACCTCGGTGCCTCTGATGAG
ATCCTTGTGGAAGAAGTTAAAATGTACAAGATATGAGGAACGAGAGAAAT
CACTTCAGAGCACGCTGACCGTTTTGGAGAAGGAGAATCTGTTACGCCAA
CAGGCTGGTGAATGTCACAAGAGGAAAGCCGTTGAAATCGGTACTCAATG
TCAAGAGATGGCATTCCGAAATGAGACATTGTCCAAACAGTGCGATGAGC
GTATCAAGTCAACACAAATCCAGAAGTTATTACGTGAAGAAAAAGAAGTT
CTGTTAGAGAAAATTTCTGCTCTCACCTCTCGACAATCGTCCATCGATGA
TCTCGTTAAAAGGAAGGTGACGCGCTACTTGGTGAGATGGAATTCACCGG
GCAAGCTTTTGAAGAGATGCAGGACCAAAATATTCAACTGATGCAACAAC
TACGCGAAAAAGATGATGCCAACCTCAAACTCATGTCCGAGATGAAATGT
AAACTGGCCGTCGTCACTGAAGATGTGGTTGCACAAAGCAAGAAATTCTC
GGATGAAGATCACTTAAAGGAATGCAAGAAATTAGAAGCCAAAAATGATG
AACTGAAAAAGACTATCAACAACATGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003194XLOC_003194Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005650-proteinTCONS_00005650-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005650-exon-sc0000054-1575043694:442765..443069TCONS_00005650-exon-sc0000054-1575043694:442765..443069Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1575043694:442007..442135TCONS_00005650-exon-sc0000054-1575043694:442007..442135Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1575043694:441320..441432TCONS_00005650-exon-sc0000054-1575043694:441320..441432Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1575043694:440438..440606TCONS_00005650-exon-sc0000054-1575043694:440438..440606Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1575043694:439625..439795TCONS_00005650-exon-sc0000054-1575043694:439625..439795Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1575043694:438069..438857TCONS_00005650-exon-sc0000054-1575043694:438069..438857Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1510915933:442765..443069TCONS_00005650-exon-sc0000054-1510915933:442765..443069Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1510915933:442007..442135TCONS_00005650-exon-sc0000054-1510915933:442007..442135Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1510915933:441320..441432TCONS_00005650-exon-sc0000054-1510915933:441320..441432Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1510915933:440438..440606TCONS_00005650-exon-sc0000054-1510915933:440438..440606Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1510915933:439625..439795TCONS_00005650-exon-sc0000054-1510915933:439625..439795Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1510915933:438069..438857TCONS_00005650-exon-sc0000054-1510915933:438069..438857Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1491911889:442765..443069TCONS_00005650-exon-sc0000054-1491911889:442765..443069Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1491911889:442007..442135TCONS_00005650-exon-sc0000054-1491911889:442007..442135Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1491911889:441320..441432TCONS_00005650-exon-sc0000054-1491911889:441320..441432Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1491911889:440438..440606TCONS_00005650-exon-sc0000054-1491911889:440438..440606Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1491911889:439625..439795TCONS_00005650-exon-sc0000054-1491911889:439625..439795Clytia hemisphaericaexon
TCONS_00005650-exon-sc0000054-1491911889:438069..438857TCONS_00005650-exon-sc0000054-1491911889:438069..438857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:438069..443069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.121	38.181	22.6999	22.2083	57.3342	46.4402	35.3518	39.4415	28.7552	29.1305	45.0583	47.9002	54.5085	72.0247	47.5141	47.4236	24.6723	36.1926	44.0378	34.9182	29.3215	27.1669	53.3224	47.3182	41.2846	40.2983	15.8509	25.6579	27.9427	34.8687
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Blast
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BLAST of TCONS_00005650 vs. Swiss-Prot (Human)
Match: BRE1B (E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4)

HSP 1 Score: 257.684 bits (657), Expect = 1.315e-74
Identity = 146/312 (46.79%), Postives = 213/312 (68.27%), Query Frame = 3 
Query:  123 LLKNEKTLKDEVEIMKCKLAVVTEDVVAQSKKFSDEDHLKECKKLEAKNDELKKTINNMKQEGDALLGEMEFTGQAFEEMQDQNIQLMQQLREKDDANLKLMSERIKSTQIQXXXXXXXXXXXXXISALTSRQSSIDDLVKRYEEREKSLQSTLTVLEKENLLRQQAGECHKRKAVEIGTQCQEMAFRNETLSKQCDELTKSTQDRGNRLEEEIFKFNRIQEENIGLKKKLDKAKRMEYLGASDEILVEEVKMYKSKLMCPICNTRPKDAILTKCFHVFCIDCLKTRYDTRQRKCPKCNATFGNNDFHKMYM 1058
            L+  E+  K EV+ ++ ++  + E    +SKK +DED L+  ++ E + + L++ +   KQE +ALL EM+ TGQAFE+MQ+QN +L+QQLREKDDAN KLMSERIK+ QI KLLREEK+ L E++  L S+  +    V++ EE+E++LQ +L  +EKE  LR QA E +KRKAVE     +++  + E +  +  E+     +     E+E F   R QE+   L++KL+K +++E    +DEIL EE+K YK++L CP CNTR KDA+LTKCFHVFC +C++ RY+ RQRKCPKCNA FG +DFH++Y+
Sbjct:  689 LMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
The following BLAST results are available for this feature:
BLAST of TCONS_00005650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRE1B1.315e-7446.79E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens ... [more]
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