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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005728 ID=TCONS_00005728|Name=TCONS_00005728|organism=Clytia hemisphaerica|type=transcript|length=905bp
TAAAAACATGTTCTTATGTTATGTTTGTGAGTATTGTGAACTCGACAAGG
ATTTATGGATCAATTCCGGAGATTGTAAAATATGATCAACCACATACTgc
aAAAACTTTTCGGTAAAACCACCATGTATGTATTGAATAGAagaacgtcg
tttatgagagttttacCTTGTTGACGGTGACGGTGACTTGAAACATCCTG
TCTCCATGACTTGGTCAGAATTCTTCAGCCATCGTTGGCAAAAAAGGGGG
GTTAATGAACTATAGTTCTTTTTAAAGTAAGCCGGGGACCTATTGTGTCT
TCAATACGGCTAATTTGGCACTGAATGTAGAAAGATTGCTCAGGGTCAGA
TTATGCTAAAATCTGCTCTCAAATTTTGGCCGAATTCCCGCCTTTTTTTA
TAACTGTGCATTCGTAGATTTAAAAAGTGTGCCTCCCAAGTCACGTTTTA
ACCCTTCTTACTAATATTTCTGTAAACTCTTTAAAAGTCCAATAATCCTC
GGGTTTTTAGGCGATTTTGGAATTCTTTGAGGTCTTTTTATACACTTATT
GCTTATATCGAGGTCAAatatttttacttctttttgaaACTATCTTTGTA
AGTAGTGGattaaacttaaactttttaTTTGACATTATTGATAATAAAGT
CGATAAAAGTTTATATCGATTATAAAGTGTTCACAAGGTGTGGCCTTTTT
GAAGTTACAAAGAAGATTCTTTAGATGACGAACTGTTCTTGCAGAGAGTG
GTATTATACTTGTCACGCAAAGCGAGAGAGTAATGCAGTAGCGTTTTAGA
TTGATTGAACAGAGTATGCGAGTAGTATGTATAAATCAATTAATATTACA
TTGCGACAGATAAAATAAGAAATAGCGGTTTGGATCGAATTATACTTTCT
CTTTT Run BLAST on NCBI transcript from alignment at sc0000059:307649..313609+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005728 ID=TCONS_00005728|Name=TCONS_00005728|organism=Clytia hemisphaerica|type=transcript|length=5961bp|location=Sequence derived from alignment at sc0000059:307649..313609+ (Clytia hemisphaerica)
TAAAAACATGTTCTTATGTTATGTTTGTGAGTATTGTGAACTCGACAAGG
TAaataattttatggatttttattttgaatctgtgtCCAATTATTCTTTC
GCGGACACATGGACATTTTATGGTATCGAGAGTATAAGCTAGATCAATTG
GAGTAGGTAGATAGATGTAGgtagtcgatattttacgtggatagcccagt
aatctagtaCTTATTTCAATTGTTATAACTGAGTCCACGACCAGCctgct
cggctatctatgaactgaacgaaaCAGTGGAAGGGACGGAAATTGATGTT
CTTAATTCTTTTAATATCCTTTTTTTCGCTCAAATGTCAGGCTTGATATT
TTTATATGCGTAtaagatatttttaaatttaaggTATCACTGTTAAATTT
AAACATATGCTAGGGTACCTAAAGAGTTGGATAATCTCAATGTTGGTTAC
AATTAACATGGTTGGAAATTGTCCGGGGCATGGATTTCCCAGTGGTGAAC
TTGCAGGAGGCATTTTCctggtagtctgaatcgcagacctctatagatac
aTTGCCTACAAGAAACTCTTTTTCACTAGAAGATGATAGCAGAAGCCTTT
TCCTGGGGGACAAATTTCCGTAGGATTAAGCAGGGAACAATTTTACGGGG
GCAAGATTCTCGTGAACGAATATCTTAGAATCTATTTTGCTACCATAAGG
AAACCAGGCATCATTATCAAACTGGTTCCCTTGAGATTGGTTTCCATATA
TTAAAGAgtaaaaaatttttcacttaaaggAAAAATCAGAGGTTGCGATG
ATACACTTTGCCAATAGATTAATACAATGTTCCTCAGCCAAATCCCAGTA
TAACTTTCTTcgaattttatgaattttaacaAGTATTaggaaacaataga
aatttgaagTAAGAAACAtgtaaaaacccatttttaacCGAATTATCATA
TAGCTCGACTTTGGAAAAGATGCGACAAAAAGATTTGGCGAATGGATTTC
AGTTCTTCGAACGACACAAATCATGGTTTATAAGCTCCATCAATTCATCA
ATGCtagcaaaagtcttcatttccATACTTTCTTCATCATAACACAAATC
GTAATCGTGTTGTGAACGAAACAGACGGTACCGATATTCTTGATTACGTA
GAAGATAATTGTAGTAATATtagcaatacaccttttcgaccgtagccgcc
aattaccgcgcgggcatttttttgtccgttttaccctaaaaccatcccag
tctTTTTTACATACCTacagacaatagaaaaaagtgttgaaaaaggaTCG
GATAATTGGTGCgggcctgaccgcgcgactacggtggaaaaggtgtatta
agGACCATAGTCGGCTAAGTTTTAAtaggtaattaactttttttctttcg
aagttttttcaaactgtacgcaaagaattgaactgttttcgatttttggg
aaaaattttctaaattaatgcatcaaaagttatggctgtttttctatgaa
aaattgggatggaaaattagtcaaaaagcactattttcaagattttgaag
caaataagatTTTAAATAACTAATTTTAGTTCGGTAAGAGATATTCCATC
TACCgccaaattcttttcaaaatgttttttctccaCCGAAAATAagcttt
tcaaagttgaaatactcttcttcgcaaaagtcttcattttcttcttcatc
aaattttttcattgtgaTTCTTAAATTTCCAGTCTCACGGATAATttgcc
taacagaaaatgtataacgtgccacagttttgtgtgctacatcaagtaga
actttatattttgtaagtggcaaatattgaaaattcaatatggtcagagc
ccttaagccaTCCAAATTCACCATCCAGTAGACGGATTTAAATATGTTTT
CGAGTTCTTTTATAGTCACGATTCTCTTGAAGAGGGTTATCCCCCAACTG
CCCACAAAGTTAACATATTTCCCACCTTATGAATATGGTCAACCTTCGCC
TTTGTGATGGCTGGTAGGATCTTTTTGATGGGATCTCATAGTGACTTGTC
AAGTTGATAAAAGTACCCAATGTAAGATCGTTTTATCGTTTTTTTTGCCT
TTTGAGTTCTTCTTTTCCTCCTTCTTTATATTGCAAGAAGCCTGGTGATA
GATGTTTTTCTTGCGGGTTTTATTGGCCCATCATCTGGCTTTTCTTTAAC
TTGTCGCTGTTCGTGGTACTGCACGtccattttgaagaaaaagtagCACT
TTTTTATACGAAGTGTACGAATTGCGAATAAACATTCGACTTTTGCTATC
TTGCTGGGCTTTTATGCCGCTTTGGCTTCTTGTTTAAATTTAAGATCAAC
CAAATCCTCAATTTTCGCAACGGTTGCAAGAGGTtgagcaaattttcaaa
actagaaaacttattttttattcaaaaggtAAAATCcggagttttcaaag
aataccATGACAGTGCTAATAATTAATGTTTTATGTTTATCTGTTGGGTT
CCAAAATTCACAATTTATTTCAGACCGACTGATTTTTCACCAGAGTTTAA
AAATATGCTAACATTTGAGGATTCTTTCTCTAGAGTTCATAACGTTACTG
ATTTGATTTGGGTTACTGATACAGCAGGATTATCGGGAGGAGGACCTGGT
AAATTTTTTATGCGGTCTTGGATCTCTTTTTTTGCTATTTCTATTTTGAA
TTATTTCCCTCCTGTTTTAGACCAAAAAtagagaacaaactatataaaaa
cataaggcttcgatggccaaattgttaagaacattttaaggctttgtagt
cCCTAGaacactcaatttcttaggaaaatgagcaaaaatactcaaaaaaa
attgtgaaaataagaacatgttaagaacatttttaggattcaaatttttg
gatgttcttgtaaaaagaaaaacgtgtgtTTTTTAGGATTCTTACCGTTT
CAATCCTGAGATTGCTTATATTTTCAGATTTCTAAATTATTCTgaagtgt
tttttttctataagaccTACGAGAGTATTCTAAAAAATGGGAGTCTATCG
TTTAGTATGTGCATATGAAGTGAAGTGCACTGTAGGAGCTCAATATCAGA
CTCTGAACAGGTGTCTTTTGAAACTGAattcaaaatatatattatcTTAT
AGATTCATCAATAGAAAGATTTTTGTAGCTGAATGCAAAGGCGTATGGGA
GTATTCATATAATCGATCAAAAAAGGGAAGGAAACGTGTTTTTAAGAaat
atattattattttatcaatattcaaaatctttttcatattttgcatTCGT
ATTCATAAAAAGCGTACTACGATGTACTATTATAAAGCACGAGGGAAGTT
TTGTTGTGGTTTCTAGAGTTACAGAGTAAAGAGAGAGACTGCAGTAGATT
ATTGAATGGTTTTGAagttttgacgatttttttatCGTAGTATTCTTTGT
AGAGAGATTGAAAGAGAGAAATGGCATCTCTAATTGCTCTAAGTCGAATC
TCGATGATTCTTTTGTTAACTTTCTAGCTTCCATCCAGGAGCTTTGGTTT
TAAAGTCCGGGGACACTTATATTGTCTGGTCCACGGAATGTGCTgccttt
aagggctctgaccatagtcagaaaattgattttagtatctgaaacataaa
agttatgttttaaattctttaacacttttaacaaagaattgcctttataa
attgttttttaatcaaatcccttaagagtaattaagaacttgattgcaaa
aatgacgttatgaactttaaaaagacgttaataatatgttgcatcacctt
cttttataaaaagtgctaagttttaatgggtaattaacctttttgtttcg
aactcttttcaaactgtccgcaaagaattgaactattttaaattttgcgg
aaaatttttctaaaaagatgtgtcaaaagttatgactgtttttttaagca
aaatccagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNttcttcaaaatgttttttcttcgccgaaacta
agctcttcaaagttgaaatactcttcctcgcaaaagtcctcattttcttc
ttcatcaaactttttcaatgcaatttttgaattttcagattcaggaatag
tttgtctaatagaaaatgtataacatgctacagttttgttggttacatca
gtcagaaaacacattttaaacacggcaattatgaaaaattcactatggtc
agagcccttaagggaaGGTTTTCcgagaccctcgaaatgcaTTGTAAGTG
TGTACTTTTGAGAGATTGCACTATAATCTGATCTTTTTTAGCTGCATACA
CCGTAAGGTCGGGTTTGGGAAAAATCTGGATGTATCTTTATATAGTATTT
TTGGACTCGCACCGATTTTGATTTGTTTAGCACATTGTGTTAACATCTCT
GGGCTCATTTTCAGGTGCCTTCAGcgaaataagatatgaaatcaaactac
cCTGTAAGGGTCAAAAACGTttggtaaaatgcactgtaagggtacctttt
caaaGCTCAAGGGCGGCACTGTAAGGCCGAttctgaaaataactttttgg
cGGCACaagccgtcgtttagaaatcgagtgccccccgggTTTTAAAGAGT
CGAAGAGTCGCGTATCTGTTGATTTCTCGAATCAATCATATTTCTTTCAA
TGGACAAATCGGTGGGACCGGGTGGAACattacaatatttttattttact
ttttagcttCTTTTACAGGATTTATGGATCAATTCCGGAGATTGTAAAAT
ATGATCAACCACATACTggtgacgctctctaattctaTCTTtaaggggaa
tcggattttcatcggATAAGGGAACGTATTGAATAGATAGGTTTAAATCA
GCCATTCcataaagttataagaaaaaaaaaaaaaaaagctttatttttat
ttcagcaAAAACTTTTCGGTAAAACCACCATGTATGTATTGAATAGAaga
acgtcgtttatgagagttttacCTTGTTGACGGTGACGGTGACTTGAAAC
ATCCTGTCTCCATGACTTGGTCAGAATTCTTCAGCCATCGTTGGCAAAAA
AGGGGGGTTAATGAACTATAGTTCTTTTTAAAGTAAGCCGGGGACCTATT
GTGTCTTCAATACGGCTAATTTGGCACTGAATGTAGAAAGATTGCTCAGG
GTCAGATTATGCTAAAATCTGCTCTCAAATTTTGGCCGAATTCCCGCCTT
TTTTTATAACTGTGCATTCGTAGATTTAAAAAGTGTGCCTCCCAAGTCAC
GTTTTAACCCTTCTTACTAATATTTCTGTAAACTCTTTAAAAGTCCAATA
ATCCTCGGGTTTTTAGGCGATTTTGGAATTCTTTGAGGTCTTTTTATACA
CTTATTGCTTATATCGAGGTCAAatatttttacttctttttgaaACTATC
TTTGTAAGTAGTGGattaaacttaaactttttaTTTGACATTATTGATAA
TAAAGTCGATAAAAGTTTATATCGATTATAAAGTGTTCACAAGGTGTGGC
CTTTTTGAAGTTACAAAGAAGATTCTTTAGATGACGAACTGTTCTTGCAG
AGAGTGGTATTATACTTGTCACGCAAAGCGAGAGAGTAATGCAGTAGCGT
TTTAGATTGATTGAACAGAGTATGCGAGTAGTATGTATAAATCAATTAAT
ATTACATTGCGACAGATAAAATAAGAAATAGCGGTTTGGATCGAATTATA
CTTTCTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005728-exon-sc0000059-1491911889:307649..307697 | TCONS_00005728-exon-sc0000059-1491911889:307649..307697 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1510915933:307649..307697 | TCONS_00005728-exon-sc0000059-1510915933:307649..307697 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1575043694:307649..307697 | TCONS_00005728-exon-sc0000059-1575043694:307649..307697 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1491911889:312617..312666 | TCONS_00005728-exon-sc0000059-1491911889:312617..312666 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1510915933:312617..312666 | TCONS_00005728-exon-sc0000059-1510915933:312617..312666 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1575043694:312617..312666 | TCONS_00005728-exon-sc0000059-1575043694:312617..312666 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1491911889:312804..313609 | TCONS_00005728-exon-sc0000059-1491911889:312804..313609 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1510915933:312804..313609 | TCONS_00005728-exon-sc0000059-1510915933:312804..313609 | Clytia hemisphaerica | exon |
| TCONS_00005728-exon-sc0000059-1575043694:312804..313609 | TCONS_00005728-exon-sc0000059-1575043694:312804..313609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:307649..313609 + |
Blast
The following BLAST results are available for this feature:
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