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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005740 ID=TCONS_00005740|Name=TCONS_00005740|organism=Clytia hemisphaerica|type=transcript|length=5176bpRun BLAST on NCBI protein sequence of TCONS_00005740-protein >TCONS_00005740-protein ID=TCONS_00005740-protein|Name=TCONS_00005740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1184bp MYIKGIVLDGFKSYAKRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGRun BLAST on NCBI transcript from alignment at sc0000059:530231..562861+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005740 ID=TCONS_00005740|Name=TCONS_00005740|organism=Clytia hemisphaerica|type=transcript|length=32631bp|location=Sequence derived from alignment at sc0000059:530231..562861+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000059:530231..562861+ >TCONS_00005740 ID=TCONS_00005740|Name=TCONS_00005740|organism=Clytia hemisphaerica|type=CDS|length=106650bp|location=Sequence derived from alignment at sc0000059:530231..562861+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005740 vs. Swiss-Prot (Human)
Match: SMC2 (Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2) HSP 1 Score: 1256.12 bits (3249), Expect = 0.000e+0 Identity = 688/1173 (58.65%), Postives = 894/1173 (76.21%), Query Frame = 1
Query: 1045 MYIKGIVLDGFKSYAKRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGITNLTHVRATNLQQLIYKSGQKGVTKATVTITFDNTDKKQSPMGYETFDEITISRQIVLGGRNKYLINGCNANNTRVQDLFRSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYESKKQQAIKTMEKKQSKLNDIEAVLNEEITPTIKKLKEERSSYLEYQKVMRVIEHLTRLYVAYXXXXXXXXXXXXGSELEKMNEAISTLSARNQEISKEIARIDGEIDELQRKKDEESGNVLKELEKRVDELSKIEVKATSDVKHANESLNAEKKKLRQLQKNNTDSTSQLQSKEKLIEKLEHQISSFEERNTADAQAVTKAQDHYHAVSAGLSSNDDGEDKTLADQLMECKNAISKADTEIKQAQIXXXXXXXXXXXXQADLKSTEKGYEKDKVAFEAMKKDLTKIENQLKTLNYRDGQEDELIARKRKLSQEVSRLQNIVETLEARFPQLQFEYHDPEPRFDRRKVKGLVANLINIKDVKYATALQVTAGGRIYNVVVDTDRTGKQLLQNGRLQRKVTLIPLNKIAARSISDTVVQSAKSCVGAANVDTALSLVGYDKEIEGAMKFVFGSSFVAADLNSAKKVAFDPNVKTRTVTLDGDVFDPSGTLSGGARRQQQSILASIQELQDARTELSNKEKELRNVEKELEGIKSVAERYNKLSTDLDMKTREIELVEDRLKQSTHHQKVEELDAYKASVEQQKTTIQQGKETMAAATKKSKDLDQKMKEKSAHREKELKSAETALTKAKQKAETSKKEFKTKQQXXXXXXXXXXXXXXXXNGLEEQLTAAEETITKMSEECERLSDVANXXXXXXXXXXXXXXXXXXXXRLCXXXXXXXXXXXXAFVKETSSNQLKLKEMEHKILKVNKDAQDAAQKVEYMLEKYDWIANEKQYFGQENTAYDFQANDPKDAAKQLTRLNETKEKLGKSVNMRAMNMLGKAEEKYNDLMXXXXXXXXXXXXXXXXXXXLDQKKNEALKIASAKVNKDFGSIFSTLLPGSDAKLAPPEGMTVLDGLEVKVAFGSVWKESLTELSGGQRXXXXXXXXXXXXXFKPAPIYILDEVDAALDLSHTQNIGQMLRQHFRHSQFIVVSLKDGMFNNANVLFKTKFVDGVSTVNRFVQ 4563
M+IK I+L+GFKSYA+RTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGI+NL+ VRA+NLQ L+YK+GQ G+TKA+V+ITFDN+DKKQSP+G+E DEIT++RQ+V+GGRNKYLING NANNTRVQDLF SV LNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYE KK A KT+EKK++KL +I+ +L EEITPTI+KLKEERSSYLEYQKVMR IEHL+RLY+AY+F AE+ K ++ EL++M + + L E K+I ++ EI+EL+++KD+E+G +L+ LE + E ++ K+ S ++L E+ K ++L+KN + + L +KEK ++K+ + + +E + DA+A+ AQ H++AVSAGLSSN+DG + TLA Q+M CKN ISKA TE KQAQ+KLKH + ELK KQA++K + GY KD+ A EA+K+ K+E ++K LNY + +E+ L+ ++R+LS+++ RL+ E L ARFP L+F Y DPE ++R VKGLVA+LI++KD TAL++ AG R+YNVVVDT+ TGK+LL+ G L+R+ T+IPLNKI+AR I+ ++ A++ VG NV ALSLV Y E++ AM+FVFG++FV ++++AKKVAFD + TRTVTL GDVFDP GTLSGGAR Q SIL QEL+D + EL KE ELR +E+EL G+K+ AE+Y +L +MKT E +L++ +L+QS++H++ EELDA K ++E+ + T++ KE A +K + L+ KMK A RE+ELK A+ L AK KA+ S K+ K KQQE+E +LE+E L+ E ++QL A E I + E ++ + K +A++ + +QKE + I K E ++ + +QLK+KE++H I K ++A+D A KV ML+ YDWI E+ FGQ N+AYDF+ N+PK+A ++L +L E KEKLG++VNMRAMN+L +AEE+YNDLMKKK+IVENDK KI I+DLDQKKN+AL IA KVNKDFGSIFSTLLPG++A LAPPEG TVLDGLE KVA G+ WKE+LTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLR HF HSQFIVVSLK+GMFNNANVLFKTKFVDGVSTV RF Q
Sbjct: 1 MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRSLEDALAEAQRVNTKSQSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEKEVKKITDGLHALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQMMACKNDISKAQTEAKQAQMKLKHAQQELKNKQAEVKKMDSGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLEKRRQLSRDIGRLKETYEALLARFPNLRFAYKDPEKNWNRNCVKGLVASLISVKDTSATTALELVAGERLYNVVVDTEVTGKKLLERGELKRRYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVEYKPELQKAMEFVFGTTFVCDNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGGARSQAASILTKFQELKDVQDELRIKENELRALEEELAGLKNTAEKYRQLKQQWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNTKEIQRKAEEKYEVLENKMKNAEAERERELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHTSYKQQLEAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVAKHKEQNNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNPKEAGQRLQKLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKKKRIVENDKSKILTTIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAMLAPPEGQTVLDGLEFKVALGNTWKENLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALDLSHTQNIGQMLRTHFTHSQFIVVSLKEGMFNNANVLFKTKFVDGVSTVARFTQ 1173 The following BLAST results are available for this feature:
BLAST of TCONS_00005740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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