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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005747 ID=TCONS_00005747|Name=TCONS_00005747|organism=Clytia hemisphaerica|type=transcript|length=2221bp
AAAGAAGAGAAGAACAGTATAAATCTTGGCAAAGGGACGTTAAGAGACGC
TAAAAAAGCAGTCAAAAACTTGGTCGAACAAAACCAACCATCCCATCATA
CAATAAAATGGCTTTTCGGATTAGTGCTATCGGAGCTCGGTGAAAAAGGA
GAACACTTATTCTTTAGTAAACTCGATTCCCTCAAAGACGACCCTGTTCT
TGAAGATACTGTGATTCTCAGTTCCATCAACTTTCTCACCAATGTCCAAA
AGAAAATGCATCAGGAGATTGATGTCCTTATTTTCTCGTGGACCAGGAAA
TTAATCATAGGCGTTGAAATCAAACGGACACTTACTGGAAAAGCTTTTGA
CCAGTTGGATAAATACCATAAATTGATAGAGGAGAAATTGAGTGATCAGT
TAGGACATGGCTGGACTTATCATCCAGTCATATGTGTTGAAAGGGATGAC
CTtttcttcaacaatcaacatTACATTGATCAAGAAACAGATTTGAAATG
TTGGTTATCCACCGTGTTGGCAAAATATCCGACCGTTCCCTCTCTCATCC
CAGCATTAAACAAAGTTAAAGATCTCCTAAGAATCGTTGTGTTTGCCATT
CATGCTTCAAAAACAGCACCCATTACCACATCAAACTGGGTGGAGTATAT
CTCGCAAGCCATCGATACCGTCTGCACTACTGACAACATACTCTTTTACA
GTCAGCGCCAACTTCCCATCATGAAGACAGCCACTTCTGAATTCAATAAG
ATCCTCTTTTATGCCCCTTACGGATGCGGCAAGTCTTTCATCCTTCAGGA
GAAAGCAAAACAATTGAGTGGAATGACGGAATACAAAGGACGTGTTATGT
ATGTCATTGAAAAGACTGATGATTTAGAAACCCTTCTTGAGTGGAGATTG
AAAGACGAATTGGGAAACGAACATGGAGTTGACGTCTATGGATACAGATG
TTACTTCGGTTATGAAGAGGAGAATAAAGAGGAAACTGAAAAGCTGATGA
AGAGGATTCGAACAAGAAACATCAACGCATTATTCATCGATGAGTGTGAT
ATTTCCGATAATCAACTGAAAGAAATGATAACGAAAGTCAAACAAGACGT
TGATGTGATTTGGATTGCATCAAATGGATACGGTCATCGGGAAATTTTAT
CAAGTTATGAAGTTCTTTCGATGTATGACGATTTCATGAAATATGAACTT
GACGTGAATTTAAGAAACTGCAAAAGTATAGTAAAAGAGGCATTAAGCTT
TGAAGAAAGAGAAGGTTCGACATATAAAGAAGGTTTAGTACTTCCACCAC
CGAATCATCCTAATGGAAAACAACCCTACCATTCCGACTCATTTGAAAAC
GGCATCACAGAAATGAGAAAGATCACGAACGATGGAGTGCTAGTGATATC
TGATATTCTATACGAGAAGGATGATCTTCAAACATTGGACAAGATGAAAT
TGAAATGGAAAAGGTATGGGCAAGATGAAAACGATTTTAATGGAGGTGAA
AGTCCATATCAACATCTCGTAgacaaaaacattttattgatTAACGACTA
TGAACTTATTTCCGGTTTCGAATGGAATAACATCATCCTCATCATAAAAA
GAATAAGAGGAGTTGTTGCTCACCATCCAAGTAATCGGATCATGAGATGC
ACGACAAATCTCATGATTGTTGAACAAAGACGAATTTTCTTCAGATGAAA
CCGATAGTGATCTTCAGATGATTAAGTTTTACCAAAAtcttaaaacataa
aaatcacgGTTTTGATATCTGATTTTTCATATCTTGTTCACAATATTAAA
TTAATTGTCTTTTGtgttttatttgaatttcatgaaaaatctaGAATCTT
TTCTCACAGTCTTTCTCGATGTGGACGAAATATCCTCAACAGCCGAAAAT
TAGCGGTAAAACTTATGATGGTACTAAATaatatgtttcaaaatttctac
ctaaatttttacaatatttttgaGGTTACTTAATCAATAATCCATGTTAG
ATGGCCCGTCCATGCTTTCGGCATTTTGTCTTATAACATTTACTTCGATA
AACCCTTTgtcaatttattcattttttaaaactaCTTTTAGCTTTAATAG
ACTAATTTTATAACCCATATCATTTCTCTTGTACACTTATATAATAGCAA
AAGCACCGTTATGTGTTTTTATTTaagagaaatttttcaaatattaacgG
TATTGCTATTTAACTTTTCAT Run BLAST on NCBI transcript from alignment at sc0000059:37742..43448- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005747 ID=TCONS_00005747|Name=TCONS_00005747|organism=Clytia hemisphaerica|type=transcript|length=5707bp|location=Sequence derived from alignment at sc0000059:37742..43448- (Clytia hemisphaerica)
AAAGAAGAGAAGAACAGTATAAATCTTGGCAAAGGGGTCAGTTCACCAAT
TTTCAACCAAATTAGGAAATTCTTATTTGGCTGAAGCTGTGGTATGTCCA
ACCACTACTAGTACTTATATGTATTTCTAAACAATCTTCCCGTGTGTTTG
TCTGTTACTTTTAGAGGATTTTAGCTTTATGCTATCAAATTACTGTTAGT
TAGACCATGTTCAGACGTCATAGATTTGAATCGCTTTGGTATGGTTTTTG
TAACGAAAGAGATGAGCTCTGTTCGATATGTTTTACTTTGTAACGTCTAC
CTTTTTGACGTTTTGAATTTTGACGTTCACACAGTGTTTCGGAGCGTTTT
GTTTTGGAGCAAAATGGATCCGTAACGTCTGAACATAGGACTGAAAAATA
GGTGCATATGAGTACTCTTTTGAAAAAGGGAAAGATTACCACTGAAATGA
GGTTGATAGACAAATGTCATTTAGTTGAGATAATTCGTATTATCTATTTC
GCTCACTGCCAAATACGAGTATACTCGTAGAAGGGTAGAAGGGTCAGAAT
AACGGTAGTTTTTGAAAGAGTATGTAGCTTTGACACAGAAATATCTTCTT
TTCTTTCACATTTTTAATATCGATGTCAAATTCTGCGTCGATTGGTATAC
AATTTCGATTTAAAGTTATTTGAGGATTAATTGAAAATTAAAATAAGAAA
GGAACCTTCTGTGCTCTGGAGGTGGAGTATGCACAATATTTGCATGAGAC
AATCACGGCAAAAAGTAACAGACGTTAAATCGCGATAAAAAAAACAGTTT
TCGTCTAACAGGCTACTGGATGATGTGATATTTTATAAAAGATATTGCGG
TCTTTTACGCGAAGAAGAGTTTTGTACTTGACAAAATGAAAAAAATTCCA
GTTAATTCTAGCTTGAAGGGAAATTCCAGGGACAATCACGGCAAAAAGTA
ACAGACGTTAAATCGCGATAAAAAAACGGTTTTCGTCTAACAGGCTACTG
GATGATGTGATATTTTATAAAAGATATTGCGGTCTTTTACGCGAAGAAGA
GTTTTGTACTTGACAAAATGAAAAAAATTCCAGTTAATTCTAGCTTGAAG
GGAAATTCCAGGGACAATCACGGCAAAAAGTAACAGACGTTAAATCGCGA
TAAAAAAACGGTTTTCGTCTAACAGGCTACTGGATGATGTGATATTTTAT
AAAAGATATTGCGGTCTTTTACGCGAAGAAGAGTTTTGTACTTGACAAAA
TGAAAAAAATTCCAGTTAATTCTAGCTTGAAGGGAAATTCCAGGGACAAT
CACGGCAAAAAGTAACAGACGTTAAATCGCGATAAAAAAACGGTTTTCGT
CTAACAGGCTACTGGATGATGTGATATTTTATAAAAGATATTGCGGTCTT
TTACGCGAAGAAGAGTTTTGTACTTGACAAAATGAAAAAAATTCCAGTTA
ATTCTAGCTTGAAGGGAAATTCCAGGGACAATCACGGCAAAAAGTAACAG
ACGTTAAATCGCGATAAAAAAAACGGTTTTCGTCTAACAGGCTACTGGAT
GATGTGATATTTTATAAAAGATATTGCGGTCTTTTACGCGAAGAAGAGTT
TTGTACTTGACAAAATGAAAAAAATTCCAGTTAATTCTAGCTTGAAGGGA
AATTCCGATGAAATATTATAGACCCGGACGATTTGGAATCACTCTAACTT
AGTTTTAACTCTGAGTTTTAACGCTAGACTTTAAACTTATGACCCTAGGA
TCTGAGAATCCAAAAGTTTAAAGGTCTAATAAGGCTCAGAAATAAGCCTG
GCAGTCTACAGATAAACTCCTCCCAAATTGTGAAATATTTGGTTACATTT
AACAAAAAGCCCAAAAGCGACTTTCGCCCGATCTTCAAATTTCGAAAAAC
GATAGAACCACTGAAATTCTAAAAGATTTTGGACACAGATTGTAACTCAA
CCGAATTATTTAGAAAACAATCAAACTTAACAAAGTTAAAAAGTTGAAAA
ATCATTTTTCAATTTTTTTGTCAATATAAATAAATCGGCTATATTCAATT
TAATTTGAAAAATTTGCTAATATCTATCCATCTCTTTCAAAATCTAAAAC
CATTTTAGGGCCATTACCAAAACTTATCAAGATAGAAATTCAAAAAACAT
TTTACAAGTTTGTTAATTAATTTTCCTTCCACAAAAAAAGCTCAAAAACT
TTATGTTATGCACGAAAAAAGCTAACTCGATAAAAGTTTTGTGAAAAATG
AAATTGATATAGCTAAATGGAAAAACTTTTGCGAAAAAAAAATTCTAGTT
TATTGTTACTCGGAAATCCTTTTTTGAAAATCAAAAATCGAATTTTGCAG
CGCTTTCATTCTATGCAACTTGCCAAACTAAGTGTAACAGTCAATGGGTA
GGGCGCAATTCCAGTTTTGGTACGAAACAGGACAGTGGATGGGTATGGCA
TAATCCTAGTTTTGGTGCGAAGCGGGACAGTGAATGGATGTGACAAAATT
CTAGTTTGAGTACGAAGCGGGACAATGGATGTGTGTAGCATAATTCTAGT
TTGGGTGCGAAGTGGTACAATTGATGGGTGTGGTGTATTTCCGATTTGGG
TGCGAAGCGGGACAGTGGATGGGCGTTGTGTATTTCCGATTTGGGTGCGA
AGTAGGACAGTGGATGGGTGTGGCGTAATTCTAGTTTAGGTACGAAGTGG
GACAGTTGATGGGTGTGGTGTATGTCTAGTTTGGGTACGAAGCGGGATAG
TAGATGGGTGTGGCGTAATTCTAGTTTGGGTACGAAGCGGGACAGTTGAT
GGGTGTTGTATAATTCTTGTTTTGGGTACGAGGCAGTACAGTCAAAAATC
GTCGTCTTGGGCGTAACGCAGGACAGTCGGAAATAGTGACAGATAATTTT
TTGGTCTCTAAAATTGATGAAGGGCAGGAAGCGGGACAGTCGCTCTCACT
GTCCGGGCTATACCTATAAGTACAACGCTAAGCCGACCTTATCCGGAAAA
CTGCTGTAACAATCCTTTATACTAGCAGAGACCCCTGTTTGTAATAAAAT
CTCTCAAATTGCGTTATATACTTTTTAAAAAATCTCATTTTATTTCCAGA
CGTTAAGAGACGCTAAAAAAGCAGTCAAAAACTTGGTCGAACAAAACCAA
CCATCCCATCATACAATAAAATGGCTTTTCGGATTAGTGCTATCGGAGCT
CGGTGAAAAAGGAGAACACTTATTCTTTAGTAAACTCGATTCCCTCAAAG
ACGACCCTGTTCTTGAAGATACTGTGATTCTCAGTTCCATCAACTTTCTC
ACCAATGTCCAAAAGAAAATGCATCAGGAGATTGATGTCCTTATTTTCTC
GTGGACCAGGAAATTAATCATAGGCGTTGAAATCAAACGGACACTTACTG
GAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAGGAGAAA
TTGAGTGATCAGTTAGGACATGGCTGGACTTATCATCCAGTCATATGTGT
TGAAAGGGATGACCTTTTCTTCAACAATCAACATTACATTGATCAAGAAA
CAGATTTGAAATGTTGGTTATCCACCGTGTTGGCAAAATATCCGACCGTT
CCCTCTCTCATCCCAGCATTAAACAAAGTTAAAGATCTCCTAAGAATCGT
TGTGTTTGCCATTCATGCTTCAAAAACAGCACCCATTACCACATCAAACT
GGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACTACTGACAAC
ATACTCTTTTACAGTCAGCGCCAACTTCCCATCATGAAGACAGCCACTTC
TGAATTCAATAAGATCCTCTTTTATGCCCCTTACGGATGCGGCAAGTCTT
TCATCCTTCAGGAGAAAGCAAAACAATTGAGTGGAATGACGGAATACAAA
GGACGTGTTATGTATGTCATTGAAAAGACTGATGATTTAGAAACCCTTCT
TGAGTGGAGATTGAAAGACGAATTGGGAAACGAACATGGAGTTGACGTCT
ATGGATACAGATGTTACGTAAGTTGTATTTTGAGTCTAATTTTGAATATT
TTTGAAAACTAACCAAATAAAAACAATATGAAAAAATTCTAGTTTTTAAG
AGGTTTTCAACAATTCATAATTTGCTTTTTCCATTATCTTTTTCCAAAAA
AAATACCGTTCAAATTTGCTGCAAGAGTGAGAAAAATTTTACTGTTTCTA
TATGAACATACGTGAACATTTTAATCAAAAATGAAAAAAAAAAATAATAG
TGCACTGTTGTGATCTTTTCCTTCTAATGTTACTGATATTGTTAAAAAAA
GTTAGAAACGCGCGAATGTTCGATTTGGTCGTTCACTTTTCCGTGGCAGA
TTTTCCGTAGATTTTTTGCAACCTCGCATAATTTGACTCTACTTTTGAAG
AGAATTACTTAAAACAAAATTTTTCTTTCCTTTCAAACAGTTCGGTTATG
AAGAGGAGAATAAAGAGGAAACTGAAAAGCTGATGAAGAGGATTCGAACA
AGAAACATCAACGCATTATTCATCGATGAGTGTGATATTTCCGATAATCA
ACTGAAAGAAATGATAACGAAAGTCAAACAAGACGTTGATGTGATTTGGA
TTGCATCAAATGGATACGGTCATCGGGAAATTTTATCAAGTTATGAAGTT
CTTTCGATGTATGACGATTTCATGAAATATGAACTTGACGTGAATTTAAG
AAACTGCAAAAGTATAGTAAAAGAGGCATTAAGCTTTGAAGAAAGAGAAG
GTTCGACATATAAAGAAGGTTTAGTACTTCCACCACCGAATCATCCTAAT
GGAAAACAACCCTACCATTCCGACTCATTTGAAAACGGCATCACAGAAAT
GAGAAAGATCACGAACGATGGAGTGCTAGTGATATCTGATATTCTATACG
AGAAGGATGATCTTCAAACATTGGACAAGATGAAATTGAAATGGAAAAGG
TATGGGCAAGATGAAAACGATTTTAATGGAGGTGAAAGTCCATATCAACA
TCTCGTAGACAAAAACATTTTATTGATTAACGACTATGAACTTATTTCCG
GTTTCGAATGGAATAACATCATCCTCATCATAAAAAGAATAAGAGGAGTT
GTTGCTCACCATCCAAGTAATCGGATCATGAGATGCACGACAAATCTCAT
GATTGTTGAACAAAGACGAATTTTCTTCAGATGAAACCGATAGTGATCTT
CAGATGATTAAGTTTTACCAAAATCTTAAAACATAAAAATCACGGTTTTG
ATATCTGATTTTTCATATCTTGTTCACAATATTAAATTAATTGTCTTTTG
TGTTTTATTTGAATTTCATGAAAAATCTAGAATCTTTTCTCACAGTCTTT
CTCGATGTGGACGAAATATCCTCAACAGCCGAAAATTAGCGGTAAAACTT
ATGATGGTACTAAATAATATGTTTCAAAATTTCTACCTAAATTTTTACAA
TATTTTTGAGGTTACTTAATCAATAATCCATGTTAGATGGCCCGTCCATG
CTTTCGGCATTTTGTCTTATAACATTTACTTCGATAAACCCTTTGTCAAT
TTATTCATTTTTTAAAACTACTTTTAGCTTTAATAGACTAATTTTATAAC
CCATATCATTTCTCTTGTACACTTATATAATAGCAAAAGCACCGTTATGT
GTTTTTATTTAAGAGAAATTTTTCAAATATTAACGGTATTGCTATTTAAC
TTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005747-exon-sc0000059-1575043694:43413..43448 | TCONS_00005747-exon-sc0000059-1575043694:43413..43448 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1575043694:39432..40349 | TCONS_00005747-exon-sc0000059-1575043694:39432..40349 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1575043694:37742..39008 | TCONS_00005747-exon-sc0000059-1575043694:37742..39008 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1510915933:43413..43448 | TCONS_00005747-exon-sc0000059-1510915933:43413..43448 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1510915933:39432..40349 | TCONS_00005747-exon-sc0000059-1510915933:39432..40349 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1510915933:37742..39008 | TCONS_00005747-exon-sc0000059-1510915933:37742..39008 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1491911889:43413..43448 | TCONS_00005747-exon-sc0000059-1491911889:43413..43448 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1491911889:39432..40349 | TCONS_00005747-exon-sc0000059-1491911889:39432..40349 | Clytia hemisphaerica | exon |
| TCONS_00005747-exon-sc0000059-1491911889:37742..39008 | TCONS_00005747-exon-sc0000059-1491911889:37742..39008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:37742..43448 - |
Blast
The following BLAST results are available for this feature:
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