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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006210 ID=TCONS_00006210|Name=TCONS_00006210|organism=Clytia hemisphaerica|type=transcript|length=1922bp
TTATATCATCGTCTAGAATTACAAGTACTAATATATGCAgattcagatca
aaacaaatatggctgatgaACGTGAAGATGTCATTGGAAAGAGTATTAAG
AAAATCTTGGGAAAGATTGATATTTGTTTAAAGCTTCAACAATCAAGAGC
TGTTCGAAATATTGTTGCAGAAAAAGATACTTTATGTGTGTTACCTTGTG
GTTAtggaaaaagtttaatttttcaaattctgccTGCACTTCTTACTGAA
CTTGGACATTGCTCAAATCCCTTAGTTATCATTGCTGTTCCTCTGAAGTC
CCTCATAGAAAGTCATCTTAAATCAGCCTTAAAATTTGCGTTGCTTGGAA
TCAAAGCTACTTGTTTAAGCAGTGGAAATTACAATGACATTGCATCTGGC
AAGTACAATTTGATATTTGGCTGTGCAGAGTTATGGTTGAAGAAACAGTG
GAGAGAGCTTTTGTCTACAAAGTTATTTCGgaaaaatttagtttgttttg
ttcTGGATGAAGCTCACAATGTCACATGGGGTAGGGCTGACAAGAAGTCC
AAAGTACCTTTTAGGAAAGCCTTTGGAGAGATTTCTGTGATACGTTCATG
TTGCCGTCCAGGGACACCTATGTTAGCTCTAAGCGCGACAGTTAACGTTG
ATTTGACAGAAATGATCAAAGAAAGTTGCAATCTTTCTCGCAATTTCAAA
TTCATCTGTGATGAAAATAATGTCAGCCACCTAAAACAGTCTGTGATAAA
AATTAAAGGCAAAACAATTGAACCCTTACGATGGTTGATTCAACTCCTTA
TTGATCAAAAGTCAAACTGTCccaaaacaataattttttgtCGCACCATT
GAGCTAGCAGGTTGGATGTACGAAagaatggaaaatattttaaaactaca
TGTACCAAATTGGCAAAACTTAATAGGGATGTACCATAGTGAAACCCTTC
CGCACAAAAAGAAGAGAGTTCTGGATTCGCTGATCGATCCCCATGGTGCT
GTTCGAATCACAGTTGCAACTAGCGCATTGGGATGTGGGGTAGATGCTAA
GGACTTGACAAATGTCATTTCCGACCAGCATACAGTCTTGTTGACTACTG
TCAGCAGGTAGGAAGAGCTGGTAGAAGTCATCAAGTTCCTCCACCTCAAG
CACATGCAATTTTGTATGACTACAGTGGTCAACGTCCAGACATAGGTGAa
gatatgaaagaatatttaaaaagcACATCTTGTCTAAGAGTGAGACTTTA
CAGTGATTTTAGTGCTGTTGAAGTAAAACCTCATTCAAAATTGCATTTGT
GTTGTTCATATTGTGCCAAATTGTGCCAGTGCAAGTCATGTGAGTTGTTC
CTGTATGAGGAAAGTCATGAAAATGGTACTTCAGCAGAGAAGATTGCTGT
GCGCGAGGTCTCGGAAATTCAAGAGGTTAATATGAGAGAAAAACTTTCAT
TACTTCACGAAAGCATTGTTGATAATTTTGTATCATTTTCACCAGCTAAA
CTTGTTTCTGGTTTAACTGATCAAACAGTTGATGAAATTATTGACAACCT
AGCATTTATCAATTCAATCGATACTCTCCAATCACTCACAACAGTTGTTG
ATTTTTCATTAAGCGTTAAAGTTATTTCTCTTCTTTGTGAGTtcttcaaa
gactttgaatttTTAGATGCCTTATATTCGTCGGAAGAATTAGAATATAA
CATGGCTTTTTCTGACTCAGAGCATGAGCTCTCTGATAATAGTGATATTG
AGCCAGACTCTGACTAATGGTCCTAATAATTTTGCACTACCAATTAACTA
TGTATTTACAGATTTTTAACATTTGTTAATTTGTTTTTGCTTTATAGCCt
cttagatttttttattttcatcaaaatatgtaCATTTTCTTAATCTTTGG
GAATAAGACCAGAGGTTCTTTT Run BLAST on NCBI protein sequence of TCONS_00006210-protein >TCONS_00006210-protein ID=TCONS_00006210-protein|Name=TCONS_00006210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MQIQIKTNMADEREDVIGKSIKKILGKIDICLKLQQSRAVRNIVAEKDTL
CVLPCGYGKSLIFQILPALLTELGHCSNPLVIIAVPLKSLIESHLKSALK
FALLGIKATCLSSGNYNDIASGKYNLIFGCAELWLKKQWRELLSTKLFRK
NLVCFVLDEAHNVTWGRADKKSKVPFRKAFGEISVIRSCCRPGTPMLALS
ATVNVDLTEMIKESCNLSRNFKFICDENNVSHLKQSVIKIKGKTIEPLRW
LIQLLIDQKSNCPKTIIFCRTIELAGWMYERMENILKLHVPNWQNLIGMY
HSETLPHKKKRVLDSLIDPHGAVRITVATSALGCGVDAKDLTNVISDQHT
VLLTTVSR Run BLAST on NCBI transcript from alignment at sc0000063:723680..725601 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006210 ID=TCONS_00006210|Name=TCONS_00006210|organism=Clytia hemisphaerica|type=transcript|length=1922bp|location=Sequence derived from alignment at sc0000063:723680..725601 (Clytia hemisphaerica)
AAAAGAACCTCTGGTCTTATTCCCAAAGATTAAGAAAATGtacatatttt
gatgaaaataaaaaaatctaagaGGCTATAAAGCAAAAACAAATTAACAA
ATGTTAAAAATCTGTAAATACATAGTTAATTGGTAGTGCAAAATTATTAG
GACCATTAGTCAGAGTCTGGCTCAATATCACTATTATCAGAGAGCTCATG
CTCTGAGTCAGAAAAAGCCATGTTATATTCTAATTCTTCCGACGAATATA
AGGCATCTAAaaattcaaagtctttgaagaACTCACAAAGAAGAGAAATA
ACTTTAACGCTTAATGAAAAATCAACAACTGTTGTGAGTGATTGGAGAGT
ATCGATTGAATTGATAAATGCTAGGTTGTCAATAATTTCATCAACTGTTT
GATCAGTTAAACCAGAAACAAGTTTAGCTGGTGAAAATGATACAAAATTA
TCAACAATGCTTTCGTGAAGTAATGAAAGTTTTTCTCTCATATTAACCTC
TTGAATTTCCGAGACCTCGCGCACAGCAATCTTCTCTGCTGAAGTACCAT
TTTCATGACTTTCCTCATACAGGAACAACTCACATGACTTGCACTGGCAC
AATTTGGCACAATATGAACAACACAAATGCAATTTTGAATGAGGTTTTAC
TTCAACAGCACTAAAATCACTGTAAAGTCTCACTCTTAGACAAGATGTgc
tttttaaatattctttcatatctTCACCTATGTCTGGACGTTGACCACTG
TAGTCATACAAAATTGCATGTGCTTGAGGTGGAGGAACTTGATGACTTCT
ACCAGCTCTTCCTACCTGCTGACAGTAGTCAACAAGACTGTATGCTGGTC
GGAAATGACATTTGTCAAGTCCTTAGCATCTACCCCACATCCCAATGCGC
TAGTTGCAACTGTGATTCGAACAGCACCATGGGGATCGATCAGCGAATCC
AGAACTCTCTTCTTTTTGTGCGGAAGGGTTTCACTATGGTACATCCCTAT
TAAGTTTTGCCAATTTGGTACAtgtagttttaaaatattttccattctTT
CGTACATCCAACCTGCTAGCTCAATGGTGCGacaaaaaattattgttttg
gGACAGTTTGACTTTTGATCAATAAGGAGTTGAATCAACCATCGTAAGGG
TTCAATTGTTTTGCCTTTAATTTTTATCACAGACTGTTTTAGGTGGCTGA
CATTATTTTCATCACAGATGAATTTGAAATTGCGAGAAAGATTGCAACTT
TCTTTGATCATTTCTGTCAAATCAACGTTAACTGTCGCGCTTAGAGCTAA
CATAGGTGTCCCTGGACGGCAACATGAACGTATCACAGAAATCTCTCCAA
AGGCTTTCCTAAAAGGTACTTTGGACTTCTTGTCAGCCCTACCCCATGTG
ACATTGTGAGCTTCATCCAgaacaaaacaaactaaatttttcCGAAATAA
CTTTGTAGACAAAAGCTCTCTCCACTGTTTCTTCAACCATAACTCTGCAC
AGCCAAATATCAAATTGTACTTGCCAGATGCAATGTCATTGTAATTTCCA
CTGCTTAAACAAGTAGCTTTGATTCCAAGCAACGCAAATTTTAAGGCTGA
TTTAAGATGACTTTCTATGAGGGACTTCAGAGGAACAGCAATGATAACTA
AGGGATTTGAGCAATGTCCAAGTTCAGTAAGAAGTGCAggcagaatttga
aaaattaaactttttccaTAACCACAAGGTAACACACATAAAGTATCTTT
TTCTGCAACAATATTTCGAACAGCTCTTGATTGTTGAAGCTTTAAACAAA
TATCAATCTTTCCCAAGATTTTCTTAATACTCTTTCCAATGACATCTTCA
CGTtcatcagccatatttgttttgatctgaatcTGCATATATTAGTACTT
GTAATTCTAGACGATGATATAA Coding sequence (CDS) from alignment at sc0000063:723680..725601 >TCONS_00006210 ID=TCONS_00006210|Name=TCONS_00006210|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0000063:723680..725601 (Clytia hemisphaerica)
CTACCTGCTGACAGTAGTCAACAAGACTGTATGCTGGTCGGAAATGACAT
TTGTCAAGTCCTTAGCATCTACCCCACATCCCAATGCGCTAGTTGCAACT
GTGATTCGAACAGCACCATGGGGATCGATCAGCGAATCCAGAACTCTCTT
CTTTTTGTGCGGAAGGGTTTCACTATGGTACATCCCTATTAAGTTTTGCC
AATTTGGTACAtgtagttttaaaatattttccattctTTCGTACATCCAA
CCTGCTAGCTCAATGGTGCGacaaaaaattattgttttggGACAGTTTGA
CTTTTGATCAATAAGGAGTTGAATCAACCATCGTAAGGGTTCAATTGTTT
TGCCTTTAATTTTTATCACAGACTGTTTTAGGTGGCTGACATTATTTTCA
TCACAGATGAATTTGAAATTGCGAGAAAGATTGCAACTTTCTTTGATCAT
TTCTGTCAAATCAACGTTAACTGTCGCGCTTAGAGCTAACATAGGTGTCC
CTGGACGGCAACATGAACGTATCACAGAAATCTCTCCAAAGGCTTTCCTA
AAAGGTACTTTGGACTTCTTGTCAGCCCTACCCCATGTGACATTGTGAGC
TTCATCCAgaacaaaacaaactaaatttttcCGAAATAACTTTGTAGACA
AAAGCTCTCTCCACTGTTTCTTCAACCATAACTCTGCACAGCCAAATATC
AAATTGTACTTGCCAGATGCAATGTCATTGTAATTTCCACTGCTTAAACA
AGTAGCTTTGATTCCAAGCAACGCAAATTTTAAGGCTGATTTAAGATGAC
TTTCTATGAGGGACTTCAGAGGAACAGCAATGATAACTAAGGGATTTGAG
CAATGTCCAAGTTCAGTAAGAAGTGCAggcagaatttgaaaaattaaact
ttttccaTAACCACAAGGTAACACACATAAAGTATCTTTTTCTGCAACAA
TATTTCGAACAGCTCTTGATTGTTGAAGCTTTAAACAAATATCAATCTTT
CCCAAGATTTTCTTAATACTCTTTCCAATGACATCTTCACGTtcatcagc
catatttgttttgatctgaatcTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006210-exon-sc0000063-1491911889:723680..725601 | TCONS_00006210-exon-sc0000063-1491911889:723680..725601 | Clytia hemisphaerica | exon |
| TCONS_00006210-exon-sc0000063-1510915933:723680..725601 | TCONS_00006210-exon-sc0000063-1510915933:723680..725601 | Clytia hemisphaerica | exon |
| TCONS_00006210-exon-sc0000063-1575043694:723680..725601 | TCONS_00006210-exon-sc0000063-1575043694:723680..725601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:723680..725601 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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