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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006220 ID=TCONS_00006220|Name=TCONS_00006220|organism=Clytia hemisphaerica|type=transcript|length=4688bpRun BLAST on NCBI protein sequence of TCONS_00006220-protein >TCONS_00006220-protein ID=TCONS_00006220-protein|Name=TCONS_00006220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=872bp MSNFRNNGQVIVVSDESPVSSKKGTTTTTTAATNNNTKKKDVDNEQENNDRun BLAST on NCBI transcript from alignment at sc0000066:149269..158606+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006220 ID=TCONS_00006220|Name=TCONS_00006220|organism=Clytia hemisphaerica|type=transcript|length=9338bp|location=Sequence derived from alignment at sc0000066:149269..158606+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:149269..158606+ >TCONS_00006220 ID=TCONS_00006220|Name=TCONS_00006220|organism=Clytia hemisphaerica|type=CDS|length=23571bp|location=Sequence derived from alignment at sc0000066:149269..158606+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006220 vs. Swiss-Prot (Human)
Match: HIPK1 (Homeodomain-interacting protein kinase 1 OS=Homo sapiens GN=HIPK1 PE=1 SV=1) HSP 1 Score: 500.745 bits (1288), Expect = 2.572e-152 Identity = 236/389 (60.67%), Postives = 296/389 (76.09%), Query Frame = 3
Query: 492 DYKITAHEILRSSTGEYEVLEFLGRGTFGQVVKCWKRHTNELVAVKISKDHPSYKKQAEIEVKILSLLMQEDSEEFNFVRAIECFSHHNHTCVVFEMLQQNLYDFLRSSKFKPLSLKYVRPILYQVATTLLKLKQMNLIHSDLKPENIMLVEQERQPFRVKVVDFGSATHTSKAVTSSYLQSRYYRAPEIILGLPFDESIDMWSLGCVAAELFLGWPLYPGPSEYDQISYIIQTEGMPSQSLLHMAAASKRNRYFKRSVNAFGHEEWNLKSAQEYEQESGRPRKDEGSRRYIFNRLDDIAERNFPTNLTGTDLMAERVDRQVFIELLKRMLDLDGYTRIKPADVLGHPFFTFTHLSQFYYSRNVQSS----------IHVMDTIAYYKA 1628
DY++ HEIL S T YEVLEFLGRGTFGQV KCWKR T E+VA+KI K+HPSY +Q +IEV ILS L E+++E+NFVR+ ECF H NHTC+VFEML+QNLYDFL+ +KF PL LKY+RPIL QVAT L+KLK + LIH+DLKPENIMLV+ RQP+RVKV+DFGSA+H SKAV S+YLQSRYYRAPEIILGLPF E+IDMWSLGCV AELFLGWPLYPG SEYDQI YI QT+G+P++ LL +A +K R+F R N G+ W LK+ +E+E E+G K+ +R+YIFN LDD+A+ N T+L GTD++AE+ DR+ +I+LLK+ML +D RI P L H F T THL F +S +V+S +H+ DT++ K+
Sbjct: 174 DYQLVQHEILCSMTNSYEVLEFLGRGTFGQVAKCWKRSTKEIVAIKILKNHPSYARQGQIEVSILSRLSSENADEYNFVRSYECFQHKNHTCLVFEMLEQNLYDFLKQNKFSPLPLKYIRPILQQVATALMKLKSLGLIHADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKAVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLPAEYLL--SAGTKTTRFFNRDPN-LGYPLWRLKTPEEHELETGIKSKE--ARKYIFNCLDDMAQVNMSTDLEGTDMLAEKADRREYIDLLKKMLTIDADKRITPLKTLNHQFVTMTHLLDFPHSNHVKSCFQNMEICKRRVHMYDTVSQIKS 557 The following BLAST results are available for this feature:
BLAST of TCONS_00006220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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