TCONS_00006353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006353
Unique NameTCONS_00006353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006353 ID=TCONS_00006353|Name=TCONS_00006353|organism=Clytia hemisphaerica|type=transcript|length=3333bp
cgtttcagtcattgaaaatgataataattagctgtctaaatgaacTTTTG
TTGtatatataaaggaaggttgaatttcaataaggaagaaaatttgttga
aaaaagccaaaaaatctggcAGAATTCATAGAAAtgcatcaaatatgggt
ttcgaggtacatccagccttacataaactttatccagtctagagccaaaa
atctgaggaaaatttcggtaaaagtaaaataaattgactttgataaagat
tttaaaccctttcgacccttcagtatCAAAActtatgtgtttagttactg
aagAATGCTCTAAATCATGTAAAGGCTGTTGCAATTGCCcattctaaaat
aaaaatttgataagctgatttttaacgttttcaagTACTTTCTGAAAGTt
actttatttttattaaatggAGCATAACTCTCGATCTAATtaatcgaatt
caataaatgacccatcaaaatttaagtttgtttatctttcttctttctga
tgAAATAGGAATagttcttttagaatttttagatttcgagaaaatcagtt
tcaaagagagaaacttttttgtggcacacccggtagatAAAATTTTGGCC
ACAGAACAAGTTGACTTGTTATTGTCTCTAGCAGAGGGATTTTATGCAAA
ATAACGGTTTGGCTGAAAAAGGTCTTAAATTCTGATTGGGGcactgtttt
tatttgaaattttcatcataCATTCAAAATACAAATGGCTCAAATATATC
TAAATTTGAAGCGTATATATTTAAGTCAAATATAtagtttttctaagaaa
aaatcCATCATTTTACACCAACAGATATCTTTGTAGGGTGAAAATTTGTG
TTATTTGTAAAAAGGCAGGACTACCCAAAAAATAATCGCTATTTTGTTAA
AAACTGAGAAAAGGGTCTATCCAGGTGATGTCaaccaaacaatcaaacaa
tcgaacttgtaatcaaacttaatcgaacttatCGAACGCTAACTGTTCAA
TTACCAAACCAAATTAAACAGTAATCAAATTGagaaattatttcaattta
tGTTTGATGTGTTCGGCTTATAGTATTTGCTTGTATCCTCCATTCTTGCA
GTGCACAATTTTAATGACCAGCGTTTTCTAATCTATCATCTAATCTGTTT
CGCTGTTGATGTTTGAACCACTTGTACTTGTACTTGTACTACATTAACCG
AAATTAATTGAACAGAAAATCTATAAATCAAACAGTAATCAGTTTGAAGA
TTCGGTGAAGTTTGATTACTGTTcgatttgtactagtaataacatggttt
agagggtgatttgggattaataacccagAGGtttattgaaaacatttcaa
aatagcccgaacgTAGTGAGATTTTAATACTACTCAGTACCACTAATACA
TGTGTTTTTACCAATAATGTGCTTTTTTATGCATTATCAGTGCATCACAA
AGTGCGGAAGTCCATCAAAATACcagcttttttcaaactttgtctcgttt
acccaaacacTGCAATCCCGCATGTCTAAAagctcaagactagaaccccc
aatacaaGCATTTTGGCTGACTGAAAAAAAgttatcatcatcaattttgt
caatttacaGAATCGTTTACTAGCaactttctgaaattttcattttttgg
ttgtgcttcatttaaaAGATAATGAGGATGAAAAATTACCATTAATCCAT
CGAGCAAAAGGTTACTCCAACTAGTCCACGAAAAGTGCTTGCGCTTCAAA
TAGAATATCCCACAAATTAATATAAGCATAAACTGATAAAATCCTTTTTT
ATTCTTGGTGACGTCAAattcgatcctgacttgacagtAAGAATAATGGA
GGACCAAATTTGTCAATGTacaatttttacaaataaacctaaaagtatgt
aatattaatccATCATTGATttctatatctttatttttcacaaatgcaaa
attgatattttgtaTATCTTGATTTAAGGAAATAtctgattgtcaatgcc
aaaaaaTACTTCTTTACTTTAAGAACATTCTGTGTTGCTTCGACACACac
cccccggattgttttagttgTTTGAAAGTATGACAAAAACACGCCTATAA
TAATTATACAATATTATATATTGTTGTTCACATGactaaaagttaaaaat
ctcaaaattagtaccttacaaattttaaatttttactgtggtggtcatct
ttgagattTAAGATGGCCCTTTTTTCATGTAGAGAAATAGTCAATGTTTT
TCATaagacaaaaaggccaatctcaAAGGTAGAACAGAattgcaagattt
ccaattttccaagacacatgttttgagattgaacctttattTTGGTCATA
TGAACGACGTAATGATGATCCTGACTGAATATGAGGgctcaaaaacaaaa
cacacagTTTTTCCCAAGCTGACTGATCAACAGTTTAAATTAcctaaatt
attgtggaagttaACGCTTAAGACGAataatgtttgggaaatcaaaaccA
GATGGTACTAACTGAATGTTTGATTGTgatcaaagtaatcaataatgatc
gataataatcgaaggtGGTCAGTTACAACCTATCGATTGCAGTGGTGACA
TTCTCATTTGACTCTaaattatggcattttcttctTTCTACCATTTTCCA
GGAGATGCCAACCAAAACCCTATCAAACCGATTTTCGTAATTGAACCATC
GAAAGAAATCGAACAATTAGGTGTTAGATTACCGAACCTAATTGAACAGC
GATCGAACTATACCGAAAAATCTTCAgttcgattaaagttcgattacttG
TCGCAATTTGATTAAGTTCAACCAATttttttgtagctcaaatggttcca
gTTATTGCTAGCGCAACAGCTCTAGCCTAAACGATCCCCAACGATAGTTG
GATTAGCAGAAAAGAGTTGTTCATGCGCTGTGAAATGATTTGTGAATGAA
AACTATAAATCAAATACATTGAACATcaatcaaactaattgaactTTACC
AGAATTTCTCGGCttgatgactgttcgatttggtttggtAATCAAACACC
TATCGTTCGATTTGTTCGATCATTTTGATTACTGTTCGATTTCTTTCGAT
CATATTCAGTTAGGGAAGGCATCCAGGATCATGCCATCTATccgccagca
aaaactaaatgacacttgtaaacttaagtttcttatcattttccatcgaa
aacaaccaaaacattACTACCTGCCAAAGCCGGAGACAAAAGGTCTACtg
taatgtcgacatccctgaTTCTTCTTATTTCAAGCCCTTTCATTAAAGAT
AGGAATGATAGGAAGGTCAGGACCACTCTGTTt
Run BLAST on NCBI

transcript from alignment at sc0000066:252580..255912

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006353 ID=TCONS_00006353|Name=TCONS_00006353|organism=Clytia hemisphaerica|type=transcript|length=3333bp|location=Sequence derived from alignment at sc0000066:252580..255912 (Clytia hemisphaerica)
aAACAGAGTGGTCCTGACCTTCCTATCATTCCTATCTTTAATGAAAGGGC TTGAAATAAGAAGAAtcagggatgtcgacattacaGTAGACCTTTTGTCT CCGGCTTTGGCAGGTAGTaatgttttggttgttttcgatggaaaatgata agaaacttaagtttacaagtgtcatttagtttttgctggcggATAGATGG CATGATCCTGGATGCCTTCCCTAACTGAATATGATCGAAAGAAATCGAAC AGTAATCAAAATGATCGAACAAATCGAACGATAGGTGTTTGATTaccaaa ccaaatcgaacagtcatcaaGCCGAGAAATTCTGGTAAagttcaattagt ttgattgATGTTCAATGTATTTGATTTATAGTTTTCATTCACAAATCATT TCACAGCGCATGAACAACTCTTTTCTGCTAATCCAACTATCGTTGGGGAT CGTTTAGGCTAGAGCTGTTGCGCTAGCAATAActggaaccatttgagcta caaaaaaATTGGTTGAACTTAATCAAATTGCGACaagtaatcgaacttta atcgaacTGAAGATTTTTCGGTATAGTTCGATCGCTGTTCAATTAGGTTC GGTAATCTAACACCTAATTGTTCGATTTCTTTCGATGGTTCAATTACGAA AATCGGTTTGATAGGGTTTTGGTTGGCATCTCCTGGAAAATGGTAGAAag aagaaaatgccataatttAGAGTCAAATGAGAATGTCACCACTGCAATCG ATAGGTTGTAACTGACCaccttcgattattatcgatcattattgattact ttgatcACAATCAAACATTCAGTTAGTACCATCTggttttgatttcccaa acattatTCGTCTTAAGCGTtaacttccacaataatttaggTAATTTAAA CTGTTGATCAGTCAGCTTGGGAAAAActgtgtgttttgtttttgagcCCT CATATTCAGTCAGGATCATCATTACGTCGTTCATATGACCAAaataaagg ttcaatctcaaaacatgtgtcttggaaaattggaaatcttgcaatTCTGT TCTACCTTtgagattggcctttttgtcttATGAAAAACATTGACTATTTC TCTACATGAAAAAAGGGCCATCTTAaatctcaaagatgaccaccacagta aaaatttaaaatttgtaaggtactaattttgagatttttaacttttagtC ATGTGAACAACAATATATAATATTGTATAATTATTATAGGCGTGTTTTTG TCATACTTTCAAAcaactaaaacaatccggggggtGTGTGTCGAAGCAAC ACAGAATGTTCTTAAAGTAAAGAAGTAttttttggcattgacaatcagaT ATTTCCTTAAATCAAGATAtacaaaatatcaattttgcatttgtgaaaaa taaagatatagaaATCAATGATggattaatattacatacttttaggttta tttgtaaaaattgtACATTGACAAATTTGGTCCTCCATTATTCTTactgt caagtcaggatcgaatTTGACGTCACCAAGAATAAAAAAGGATTTTATCA GTTTATGCTTATATTAATTTGTGGGATATTCTATTTGAAGCGCAAGCACT TTTCGTGGACTAGTTGGAGTAACCTTTTGCTCGATGGATTAATGGTAATT TTTCATCCTCATTATCTtttaaatgaagcacaaccaaaaaatgaaaattt cagaaagttGCTAGTAAACGATTCtgtaaattgacaaaattgatgatgat aacTTTTTTTCAGTCAGCCAAAATGCttgtattgggggttctagtcttga gctTTTAGACATGCGGGATTGCAgtgtttgggtaaacgagacaaagtttg aaaaaagctgGTATTTTGATGGACTTCCGCACTTTGTGATGCACTGATAA TGCATAAAAAAGCACATTATTGGTAAAAACACATGTATTAGTGGTACTGA GTAGTATTAAAATCTCACTAcgttcgggctattttgaaatgttttcaata aaCCTctgggttattaatcccaaatcaccctctaaaccatgttattacta gtacaaatcgAACAGTAATCAAACTTCACCGAATCTTCAAACTGATTACT GTTTGATTTATAGATTTTCTGTTCAATTAATTTCGGTTAATGTAGTACAA GTACAAGTACAAGTGGTTCAAACATCAACAGCGAAACAGATTAGATGATA GATTAGAAAACGCTGGTCATTAAAATTGTGCACTGCAAGAATGGAGGATA CAAGCAAATACTATAAGCCGAACACATCAAACataaattgaaataatttc tCAATTTGATTACTGTTTAATTTGGTTTGGTAATTGAACAGTTAGCGTTC Gataagttcgattaagtttgattacaagttcgattgtttgattgtttggt tGACATCACCTGGATAGACCCTTTTCTCAGTTTTTAACAAAATAGCGATT ATTTTTTGGGTAGTCCTGCCTTTTTACAAATAACACAAATTTTCACCCTA CAAAGATATCTGTTGGTGTAAAATGATGgattttttcttagaaaaactaT ATATTTGACTTAAATATATACGCTTCAAATTTAGATATATTTGAGCCATT TGTATTTTGAATGtatgatgaaaatttcaaataaaaacagtgCCCCAATC AGAATTTAAGACCTTTTTCAGCCAAACCGTTATTTTGCATAAAATCCCTC TGCTAGAGACAATAACAAGTCAACTTGTTCTGTGGCCAAAATTTTatcta ccgggtgtgccacaaaaaagtttctctctttgaaactgattttctcgaaa tctaaaaattctaaaagaactATTCCTATTTcatcagaaagaagaaagat aaacaaacttaaattttgatgggtcatttattgaattcgattaATTAGAT CGAGAGTTATGCTccatttaataaaaataaagtaACTTTCAGAAAGTAct tgaaaacgttaaaaatcagcttatcaaatttttattttagaatgGGCAAT TGCAACAGCCTTTACATGATTTAGAGCATTcttcagtaactaaacacata agTTTTGatactgaagggtcgaaagggtttaaaatctttatcaaagtcaa tttattttacttttaccgaaattttcctcagatttttggctctagactgg ataaagtttatgtaaggctggatgtacctcgaaacccatatttgatgcaT TTCTATGAATTCTgccagattttttggcttttttcaacaaattttcttcc ttattgaaattcaaccttcctttatatataCAACAAAAgttcatttagac agctaattattatcattttcaatgactgaaacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003626XLOC_003626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006353-exon-sc0000066-1491911889:252580..255912TCONS_00006353-exon-sc0000066-1491911889:252580..255912Clytia hemisphaericaexon
TCONS_00006353-exon-sc0000066-1510915933:252580..255912TCONS_00006353-exon-sc0000066-1510915933:252580..255912Clytia hemisphaericaexon
TCONS_00006353-exon-sc0000066-1575043694:252580..255912TCONS_00006353-exon-sc0000066-1575043694:252580..255912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:252580..255912 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.694416 0.608853 0.660197 0.514735 1.00587 0.591953 0.901942 0.738072 0.587185 0.599796 0.641926 1.0949 0.713232 0.60981 0.264321 0.362756 0.287175 0.309272 0.431045 0.475404 0.627442 0.819028 0.238428 0.299998 0.789075 0.767884 1.30171 0.815128 0.920707 0.993071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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