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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046140 ID=TCONS_00046140|Name=TCONS_00046140|organism=Clytia hemisphaerica|type=transcript|length=1714bp
CAAAGtctttgacttttttttacgaaaaaatgcttcaaaaattgaaaaag
cgaAAAAACAGAACAAAAGACAAACATGAAACATGATATTTGAACACGAC
GACAAGAAATTAGTGCTACACAATGTTATCTTGAATAACACTAACTAACC
TCTTAGTTTGgttcgaaattttaaacacaccAAAACTGGATAttgatgac
gtaatgttttatatacAAGGCACTCAAAATAGTCCAGGCATTTGCCAGTA
ACTTTATTGTTTGAATTTAAAACTAGTGAAAAAGACCAGatcttttttgg
gtgcttccgtatataACATTCACCCTTGGGACAAAACGTCCGAATAAAGT
CCATTTCATTTAAAGTCCATTTAATGATCATTTAACGTCTATGTAGTTAC
ATCGCCAGACGAATGTTCAACGACGTTGAACGTTGTGGTTTGTGAGTAAC
TGTCACAAAAAGGTTCAGAGGCTCCAACTATTCACTTTAGACAACAcaaa
aaaccaaaattaaaagaACTATACACAATGGTCTGTTAAGAACGAACAAG
TTACATGATTTTTGCTTGGTCCATATGATAAACATCGCTGCCATCTATGG
TTAGCATGGCTTTCTCATTAGGGATTTCTGCAATGTTTTTTTCAGCTTTC
TTTTTACCATGTAGACCGATGTATAAATCTTTCAAATACGAATGAATGCC
AGGGGTAGCTAGCCAATGATCTATCTCACAAATTGTGATCGAATGAGCTT
CATTCTGAGTGCCAGGTGAAGTGTATTGAGGCTGAGGGTGAGCTAGAAGA
TCTGCTGAATTCAACAGTCCAGGAATCGCAAATTTATTTCCTTCATCAAT
TCGTTTCGCTAATTCTTCCAAATGTTGTttcaaaatgttgatttttttgt
aaCTACCAGGTGCTATAAGGTGTTTGATATTCTGTAAGACAACAGATACT
CCACTGATCTTGCGGACTGGAGATTCTTCTCCAAGTCTTGAATGTGTACC
AAGGAGAAAAGTCTCATAGGAAAATTTCTCCTTCTCTAGCTGATTCATAA
CTTTGTATTTAATCAAGAATAGCGAAACCAAGGAGAAAGCATCTGTGTAT
TTATGAAGACATAAAAGCgacaaatcttcaaaaatatctTCATCTTTTAA
ATTACAGTAAGGGAGGTCCAGGTTCCCCCAATCATAGCGCCCATCAGGAT
CACAAACTTTCCACCATTTCAAGAAATCGTAAGCTTCTTGCACTTCACCC
AAAACGCATAAAATTCCTGGGATAAGCGAACGTACCCCAAGGTTATCGCC
TCGACTCAACCAAACCAAGTCTAACAAATGTTCCACGCAAAGTTCTAAAG
ccaattttgaattattttttatccCACACTCGTGCAAACGCATGGATAAA
GCATGTCGTGCTCGACAATAGTTTCGTGGCTCGACTAAACTCCAGAAATG
ACCGACATCATCTGGAAACAAATCATAAGGTTCGTTTCCAAACCAATCCT
CATATCGTCTCAATGGTTCTCTTTCAAGAGCCACTTTCTTTAATAACTTC
TTGATCTCATTGCAGTAAGCTTTATGTTTCACCCAATGATCTTTTTGACA
TTCTTTGGAGCAATATTTGACGGCCGTACATCTTGAACATCTATTTTGAG
CATCATCTTTTGAACAATTACTGCATTTGAATGTAGTACTTCTTGGTGAT
ACTTTAATTCTTgg Run BLAST on NCBI transcript from alignment at scaffold_106:297010..300440+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046140 ID=TCONS_00046140|Name=TCONS_00046140|organism=Clytia hemisphaerica|type=transcript|length=3431bp|location=Sequence derived from alignment at scaffold_106:297010..300440+ (Clytia hemisphaerica)
CAAAGtctttgacttttttttacgaaaaaatgcttcaaaaattgaaaaag
cgaAAAAACAGAACAAAAGACAAACATGAAACATGATATTTGAACACGAC
GACAAGAAATTAGTGCTACACAATGTTATCTTGAATAACACTAACTAACC
TCTTAGTTTGgttcgaaattttaaacacaccAAAACTGGATAttgatgac
gtaatgttttatatacAAGGCACTCAAAATAGTCCAGGCATTTGCCAGTA
ACTTTATTGTTTGAATTTAAAACTAGTGAAAAAGACCAGatcttttttgg
gtgcttccgtatataACATTCACCCTTGGGACAAAACGTCCGAATAAAGT
CCATTTCATTTAAAGTCCATTTAATGATCATTTAACGTCTATGTAGTTAC
ATCGCCAGACGAATGTTCAACGACGTTGAACGTTGTGGTTTGTGAGTAAC
TGTCACAAAAAGGTTCAGAGGCTCCAACTATTCACTTTAGACAACAcaaa
aaaccaaaattaaaagaACTATACACAATGGTCTGTTAAGAACGAACAAG
TTACATGATTTTTGCTTGGTCCATATGATAAACATCGCTGCCATCTATGG
TTAGCATGGCTTTCTCATTAGGGATTTCTGCAATGTTTTTTTCAGCTTTC
TTTTTACCATGTAGACCGATGTATAAATCTTTCAAATACGAATGAATGCC
AGGGGTAGCTAGCCAATGATCTATCTCACAAATTGTGATCGAATGAGCTT
CATTCTGAGTGCCAGGTGAAGTGTATTGAGGCTGAGGGTGAGCTAGAAGA
TCTGCTGAATTCAACAGTCCAGGAATCGCAAATTTATTTCCTTCATCAAT
TCGTTTCGCTAATTCTTCCAAATGTTGTttcaaaatgttgatttttttgt
aaCTACCAGGTGCTATAAGGTGTTTGATATTCTGTAAGACAACAGATACT
CCACTGATCTTGCGGACTGGAGATTCTTCTCCAAGTCTTGAATGTGTACC
AAGGAGAAAAGTCTCATAGGAAAATTTCTCCTTCTCTAGCTGATTCATAA
CTTTGTATTTAATCAAGAATAGCGAAACCAAGGAGAAAGCATCTGTGTAT
TTATGAAGACATAAAAGCgacaaatcttcaaaaatatctTCATCTTTTAA
ATTACAGTAAGGGAGGTCCAGGTTCCCCCAATCATAGCGCCCATCAGGAT
CACAAACTTTCCACCATTTCAAGAAATCGTAAGCTTCTTGCACTTCACCC
AAAACGCATAAAATTCCTGGGATAAGCGAACGTACCCCAAGGTTATCGCC
TCGACTCAACCAAACCAAGTCTAACAAATGTTCCACGCAAAGTTCTAAAG
ccaattttgaattattttttatccCACACTCGTGCAAACGCATGGATAAA
GCATGTCGTGCTCGACAATAGTTTCGTGGCTCGACTAAACTCCAGAAATG
ACCGACATCATCTGGAAACAAATCATAAGGTTCGTTTCCAAACCAATCCT
CATATCGTCTCAATGGTTCTCTTTCAAGAGCCACTTTCTTTAATAACTTC
TTGATCTCATTGCAGTAAGCTTTATGTTTCACCCAATGATCTTTTTGACA
TTCTTTGGAGCAATATTTGACGGCCGTACATCTTGAACATCTTTGTTCGG
CATCATCTTTCGAACAGTTACTGCATTCAAATGAAGTGCTTCTTGGAGAT
ACTGTTGTTTCACTGACGATTCTTGGCTCCATCTTATTATTTTTACTAAC
TCTAAAACGAAACAAACACGGTAAATTTGCATAACACTAAACTGTAAAGT
CGATTCGttcgatttttttcatttacttcCTCGAATTCGACTTCGGTGTA
AATAAAGCAGAAAGATTTcgtttttaaaggaaaatgtaTAAATGAACGAA
GTGAATGACATAAAAATACAATATAAAAATAGTAAGAAGATAATGCTAAT
CGTAACGAATTAAACCATGTCCACCAAATACATTGTAAAGTCACCGAGAA
ATACATCGTCTTTTCGTTTGGCTTGAATAGTAAGCACTCCTCGAGGTTTT
AAGGTCAAAAGTTTAAAGTGGCAATATTTTTGGTATCCCGCACTTTATTG
GGAGTGGTTCACGTCAAACATATACCCCTCTTAAATTGCCGCTACAAAAG
CAATCAAGCGTATTCAGTAATGTTGTGTCTTTGAATGATATGGAAACTAC
TTTCAAGCTAGGTGTGCTTTGCCTAGCACTTTGGCAAGTGATACTTTTTC
TCTCGGTAGTTCAGCTATGTCGCGTTCAGCTTTCACTTTTCCATGTATTT
GAATGTAAAGCTCTTTGGTGAGGATGAAGATATCAGGTACGGGTTCCCAA
TGTTTAATATCAAACCAAACAGCACCATAAGCTTGGTCTTGAAGGCTCCC
TCCTTCCCCAACATACAGTGGGTTTGGCTGTTCAAGGAGCACTTTATAAT
TCAGAAACCCAGGAATGATGTATTTGTTTTTGGAATCGAtaaactttaaa
atttgaatCGTTTGATTCCTGATAGTTTCATATTTATCAATTGGAGAGAA
ACATTTCTTGATGTTGTGTAAGATGACCGAAACTCCACCGATTTGCTGGA
TGGGTGAATCTTCACCAACTCTAGGGTGTGTTCCAAGAAGAAATGACTCA
TAGGAAATCTTGTCTTTCTCGATTTTCCTCAACATCTTGTATTTTACCAT
ATACATTGAAACCAACCAAGGAACATGTTTTTTACTGAGATTCAATTCCG
ACAGATCCTCGAAGATATTctcattttttaatttgtcaccGCTTGGAAGC
TCGAATTTAGTGTGGTCATAATAACCATCGTTATGCAACACTTGCCACCA
TTTTAAGTAATCATAAGCTTCTTGTGGCTCATCCAGCAAGAACAGCATAC
CAGGAATATGTGCCCAACAGCCTGAATGGTCACCTCGGTTAAACATGAGA
ATATCTATCAAATGTTCCAAACACAGCTCTAAAGCTAAACGTGAATCATT
TTTCTCACCacaaaattgaaagccaatagCTAAATCAAAACGCTCCTTCA
GATAAGGTTGCATCTTAGTTATTCTCCATGATTTACCAGTCGNTGTTCCA
AACATAGCTCTAAAGCTAAACGTGAATCATTTTTCTCACCacaaaattga
aagccaatagCTAAATCAAAACGCTCCTTCAGATAAGGTTGCATCTTAGT
TATTCTCCATGATTTACCTCTACCTTCGAGTTTGGCCATCTCTTTCTCTA
CTGACACTATTTTCTTTCTGATATGTTTACAAGCGACTTTATGCCAGTCC
CAATGAGCTTTTTGACATTCTTTGGAGCAATATCTGACAGCCGTACATCT
TGAACATCTATTTTGAGCATCATCTTTTGAACAATTACTGCATTTGAATG
TAGTACTTCTTGGTGATACTTTAATTCTTgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046140-exon-scaffold_106-1491911889:297010..298638 | TCONS_00046140-exon-scaffold_106-1491911889:297010..298638 | Clytia hemisphaerica | exon |
| TCONS_00046140-exon-scaffold_106-1510915933:297010..298638 | TCONS_00046140-exon-scaffold_106-1510915933:297010..298638 | Clytia hemisphaerica | exon |
| TCONS_00046140-exon-scaffold_106-1575043694:297010..298638 | TCONS_00046140-exon-scaffold_106-1575043694:297010..298638 | Clytia hemisphaerica | exon |
| TCONS_00046140-exon-scaffold_106-1491911889:300356..300440 | TCONS_00046140-exon-scaffold_106-1491911889:300356..300440 | Clytia hemisphaerica | exon |
| TCONS_00046140-exon-scaffold_106-1510915933:300356..300440 | TCONS_00046140-exon-scaffold_106-1510915933:300356..300440 | Clytia hemisphaerica | exon |
| TCONS_00046140-exon-scaffold_106-1575043694:300356..300440 | TCONS_00046140-exon-scaffold_106-1575043694:300356..300440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:297010..300440 + |
Blast
The following BLAST results are available for this feature:
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