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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046143 ID=TCONS_00046143|Name=TCONS_00046143|organism=Clytia hemisphaerica|type=transcript|length=1806bp
GTCGACTTTTATTCGTTTTTACGCCAGATTTTAATTTCAAGTTTATAAAA
CAATGTTTTCGTTTTTAAAAGGAAAGTTACAAATGAATATGAATATAgca
ctaaaaataaaatatgaaaatagaaaaaaaagtaatTGTAACAGAAGGAA
TGGATCATAAAATCCTGTACCTTAAAATCTGAATactaaccccctggaaa
aaattATATCTAGCTccctggaaaatgaaaatgtcttCATCCCCTCGAAA
AACTAAAGGACTTATCGTAGATAAACTTGTCTCGATAATTTAACCCCTCG
GAAAAAGACCAACTTTGACCAATACAAACTCCCTGGGAAAGCGAAAATTC
GTCTTGCATAATACCCTTTGGAAATGCTCGTCCGATCCTTGTATGGATAT
TATCAAAAGGTCGAAAAATGTTGTTAGATGGCATTGGTTACTAAAGTCAA
TGAAAGTCATCGGAGAAACACTTTGCTTGAACAGCCTTTGTTGGTGATAA
GAAAACCTTTATAAAAATGAGAGCAAACAGTCAAAAAAGACTAGTAGGGC
ATTGGGATATGATATCTAGCCGGTGATACACTTTCTTTAGGTAACTCAGT
GATATTATATTCCGCCAACGCCGATCCATGTATTTGAGCGTAAAGCTCTT
TAGTGACAATAAAGATGTTAGGAGTGGCTTTCCAATGTtgagcatcaaaa
taaacagcGGCATAAGCTTGATCTTGCTGAGTTCCTCGCCCATCATAAAA
AGGGTTTGGTTGTCGAAGAAGCGTATCAGAATTCAACAGCCCAGGAATGA
TGTTTCGATTCATCATATCAATCAGTTTTAAAATGTCAAGCATTTGATTC
CTAACAGTGTCATATTTATCAATAGGAGAGAAACATTTCTTGATGTTGTG
TAGGATGACCGAAACTCCACCGATTTGCTGGATGGGAGAATCTTCACCAA
CTCTAGGATGTGTTCCAAGGAGAAATGACTCATAGGAAATCTTGTCTTTC
TCGATTTTCTGGAACATCTTGTATTTCACCATATACATTGAAACTAGCCA
TTGAGGATGTGTTTTCCCGAGGTGTAATTTCGACATATCCTCGAAGATAT
CTTCACCCTTCAAGTTACAATAAGGAAGATCAAGATTGTAGTAATCATAA
CGCTCTTGATGTGAAACTTGCCACCATTTTAAGAAATCGTAAGCTTCTTC
AGGCTCATCAAGCATGAACAGCATTGAAGGGATATGGGCACGAACGCCTA
AATAATCACCTCGGTTTAAAAACAAGATATCCAATAAATGTTCCACAGCC
AATTCTAAAGCTAATCGCGAATTGTTTTTCATACCACATACATGAAAAGC
TGTTGCTAGTTCAAAACGTTGCTGACAATAGAGCTGGGTCTGTTCTATTC
TCATAAAGTTACCAACCTCCTCTTTGAATAAGTTTTTATTGAAGAAATTT
CGTAGCGGCGCTGCCTCCTTTTCTAATAATATCATTTTCTTCTTGATATC
CTTGCAAAGTACTTTATGTTTCACCCAATGATCTTTTTGACACTCTTTGG
AGCAATATTTGACGGCCGTACATCTTGAACATCTGTTTTCGGCATCATCT
TTTGAACAGTTACTGCATTTGAATGAAGTGCTTCTTGGAGATACAAAAAC
GTCactaatttttctttcattcatttcaagtttttcaagtCAGCTAAAAA
ATCAAGAACTGGAAAATTAAAATGCATGAAAAATTATAACACAGAACTTT
cattaggctacgtcatatctgcCTTCGCtccgagcgtaaaactcctcctc
ttcaag Run BLAST on NCBI transcript from alignment at scaffold_106:300703..306599+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046143 ID=TCONS_00046143|Name=TCONS_00046143|organism=Clytia hemisphaerica|type=transcript|length=5897bp|location=Sequence derived from alignment at scaffold_106:300703..306599+ (Clytia hemisphaerica)
GTCGACTTTTATTCGTTTTTACGCCAGATTTTAATTTCAAGTTTATAAAA
CAATGTTTTCGTTTTTAAAAGGAAAGTTACAAATGAATATGAATATAgca
ctaaaaataaaatatgaaaatagaaaaaaaagtaatTGTAACAGAAGGAA
TGGATCATAAAATCCTGTACCTTAAAATCTGAATactaaccccctggaaa
aaattATATCTAGCTccctggaaaatgaaaatgtcttCATCCCCTCGAAA
AACTAAAGGACTTATCGTAGATAAACTTGTCTCGATAATTTAACCCCTCG
GAAAAAGACCAACTTTGACCAATACAAACTCCCTGGGAAAGCGAAAATTC
GTCTTGCATAATACCCTTTGGAAATGCTCGTCCGATCCTTGTATGGATAT
TATCAAAAGGTCGAAAAATGTTGTTAGATGGCATTGGTTACTAAAGTCAA
TGAAAGTCATCGGAGAAACACTTTGCTTGAACAGCCTTTGTTGGTGATAA
GAAAACCTTTATAAAAATGAGAGCAAACAGTCAAAAAAGACTAGTAGGGC
ATTGGGATATGATATCTAGCCGGTGATACACTTTCTTTAGGTAACTCAGT
GATATTATATTCCGCCAACGCCGATCCATGTATTTGAGCGTAAAGCTCTT
TAGTGACAATAAAGATGTTAGGAGTGGCTTTCCAATGTtgagcatcaaaa
taaacagcGGCATAAGCTTGATCTTGCTGAGTTCCTCGCCCATCATAAAA
AGGGTTTGGTTGTCGAAGAAGCGTATCAGAATTCAACAGCCCAGGAATGA
TGTTTCGATTCATCATATCAATCAGTTTTAAAATGTCAAGCATTTGATTC
CTAACAGTGTCATATTTATCAATAGGAGAGAAACATTTCTTGATGTTGTG
TAGGATGACCGAAACTCCACCGATTTGCTGGATGGGAGAATCTTCACCAA
CTCTAGGATGTGTTCCAAGGAGAAATGACTCATAGGAAATCTTGTCTTTC
TCGATTTTCTGGAACATCTTGTATTTCACCATATACATTGACACTAGCCA
TTGAGGATGCGTTTTTNACATCTTGTATTTCACCATATACATTGAAACTA
GCCATTGAGGATGTGTTTTCCCGAGGTGTAATTTCGACATATCCTCGAAG
ATATCTTCACCCTTCAAGTTACAATAAGGAAGATCAAGATTGTAGTAATC
ATAACGCTCTTGATGTGAAACTTGCCACCATTTTAAGAAATCGTAAGCTT
CTTCAGGCTCATCAAGCATGAACAGCATTGAAGGGATATGGGCACGAACG
CCTAAATAATCACCTCGGTTTAAAAACAAGATATCCAATAAATGTTCCAC
AGCCAATTCTAAAGCTAATCGCGAATTGTTTTTCATACCACATACATGAA
AAGCTGTTGCTAGTTCAAAACGTTGCTGACAATAGAGCTGGGTCTGTTCT
ATTCTCATAAAGTTACCAACCTCCTCTTTGAATAAGTTTTTATTGAAGAA
ATTTCGTAGCGGCGCTGCCTCCTTTTCTAATAATATCATTTTCTTCTTGA
TATCCTTGCAAAGTACTTTATGTTTCACCCAATGATCTTTTTGACACTCT
TTGGAGCAATATTTGACGGCCGTACATCTTGAACATCTGCTTTGAGCCTC
ATTTTTTGAACAATTACTGCATTCAAACGAAGTGCTTCTTGGGGAAACCG
TCGTTtcgcttatttttcttttttctttgtgcattcttagtttttttcct
ggaaagaaaaataaaccgtTCTTTGGTTAGGTTAGGAATAAGTATTAGTC
AGGAAATAGTGTATAGTTAGGAATATGGTTGCTTTGAAAAATAACaactt
ttatcatttttttccagaaaaaaaaaatttaagatatttcacatgtattg
tatttataaaaatctaaatctaagTTTAAAACGTAAAATTGGAGGAGATT
GGAGGTTATGAAAATTAACAAGGTAAAATGTATGCCAAATTAAATCTTTT
TATATTAAGGAAAGAAGACGAGTTTTCACAATGAAGATTTACTTCTAGTC
TAAAATTACCCATAGGGCAACAAACGGTGAACCAGTAAACGGcgagtcga
aaaaaaaaaaaattctgagaaGTATCTTGGAGAAAAATCTTCTTTGTATC
ATACATATTTATAGTCCACAAATATTGTAGGTATATATAGACATTAGAAG
AAGACCAGACAGTgggtttgaaaaacaaaaatttaatataCCCTTTTGTC
AAAAGAGCTTTAAGAATCTTAAGAAGCTttaagacttcgatggccaaaat
attaagttaaaaaggttttatttaccaacacttttatcaaaaaattgtgg
AAATAAGAACGCTCTAAGAATatatttaggcttaaaacttaaaaatgttT
AGAATATCTTGGCTTAAAAGATTTTCGACATAGTGACTGGCAAACATAAA
ATGGATTGGAGGCACTTGGAGCCTTGAAATCCTTAAAGCACAGAAGTCAG
TCATTTAGCCGGGTACTGTAGAAAAATGCTTCAAAATAAAAACTATGTAC
ATTTTAAACTATATACATCTAAAAATATAAATATATCATATGTAGGTTCT
AAAATAAACTTTTTCTTTTGTATAAAATAAAAATATGAACACAATGCTGA
TACGGCAAAAAATATCCCAGGTCTAAGTATCTTAATGAAACGCATCCATT
TCTGGAATGATACTGATAAAATTCTGAAAATAATCCTTCGATAATTTGAT
AACAATTTATTTTGGTTTCAGGAAAAGGGAAGGTGTAAAAGCGATACCCT
ACTCTATGGTCCCGAATAGTAGGTGGTTCAAAACAAAAGGGGTTCGAATT
TTTTTTCAATTTAACAAGCAGAGGGTCCGAATAAACAGGGGGGGGGAGTT
GGTAGACTGAAAAAAATTCTAATTTTTGCTTTTATCTAATTTTATGAACT
TTCAAGCGGTTCCTACTGATAAAATGGAAATCAAACATGGGATAACAAAT
TCGGACGTTCGAAAATTATTACACTTTAACTGAAAATGAGAAAACTAGAA
AATTAATAAATCAATGAACGGGACGGGGGTCTCTTAAAACGAGAGGGGGT
CCCTTAAAACGAGAGGGGGTCCCTTAAAAGAACAGTTGGGTCCTAAAAGG
AACGGGTTACGATCTGAAAACCATTGAAAGTTAATAAATGGGGTATGTTT
ATTCGGGACCTAAGAGTAGGGGACTTAGGAATCTATAAGACAATTGGAAG
TTGAAACAATGTAGGGCAAAGCCAATAACATAGGTCAGAGGGGCAAGAAA
AATGACAAAGAATAGAAACTCATTTAGCCTCGTTAAAGAATCTTCAGAAC
ACAAGAAATCGATATATAATATGAATCTTAAGAAAGTCGAGTGAACCCTT
GCCTTAGAAAATAAGAACCCTGTANATGTACATTTTAAACTATATAcatc
taaaaatataaatatatcaTATGTAGGTtctaaaataaactttttctttt
gtataaaataaaaatatgaacaCAATGCTGATACGGCAAAAAATATCCCA
GGTCTAAGTATCTTAATGAAACGCATCCATTTCTGGAATGATACTgataa
aattctgaaaataatcCTTCGATAATTTGATAACAATTTATTTTGGTTTC
AGGAAAAGGGAAGGTGTAAAAGCGATACCCTACTATATGGTCCCGAATAG
TAGGTGGTTCAAAACAAAAGGGgttcgaattttttttcaatttaacaaGC
AGAGGGTccgaataaacaggggggggggagttggtagactgaaaaaaatt
ctaatttttgcTTTTATCTAATTTTATGAACTTTTAAGCGGTTCCTACTG
ATAAAATGGAAATCAAACATGGGATAACAAATTCGGACGTTCGAAAATTA
TTACACTTTAactgaaaatgagaaaactaGAAAATTAATTAATCAATGAA
CGGGACGGGGGTCTCTTAAAACGAGAGGGGGTCCCTTAAAAGAACAGTTG
GGTCCTAAAAGGAACGGGTTACGATCTGAAAACCATTGAAAGTTAATAAA
TGGGGTATGTTTATTCGGGACCTAAGAGTAGGGGACTTAGGAATCTATAA
GACAATTGGAAGTTGAAACAATGTAGGGCAAAGCCAATAACATAGGTCAG
AGGGGCAAGAAAAATGACAAAGAATAGAAACTCATTTAGCCTCGTTAAAG
AATCTTCAGAACACAAGAAATCGATATATAATATGAATCTTAAGAAAGTC
GAGTGAACCCTTGCCTTAGAAAATAAGAACCCTGTAAGAAAACACaagaa
aatacaaacaaaacaaaagtaacaaaatgaaaattttaaaacacaaaatt
CTAAAACATTATAAATATCAGCCAATTTGCTTTCAAAGTTAAAAGTTCTC
AGTTTTCGTCGTCAagaaacaagttttttttaaatgtttttcttcacTAC
AGATAAATTTGAATCCTATACCGAGAGCATAATATATCAATTCTCCATGG
CAACAAAGTACAAGGTTACTCTTCATGGTCACCCATATCCTCCTCGTCAC
TGCTTTCATCATCAGAGCAACCACACTGGCAACACGCTCATCAAAGGAAG
CTCCTTGATATTCTTCAGGGCTTGTCGCTTACCATGCATACCCATATAAA
GtttcttcaaaaagtataaaacaTTAGGTGTTGCTTTCCAGTTCAAATGT
TCGTAATCTACAATGTTCCAAGCCTCGTTTTGAGTACCAGCAGCAACATA
TTGAGGCGTTTGTTGCCCCAGCAGCACGGACGAATTAAGTAAACCAGGAA
TGATGAACTTGTTGACTTTATCAATGTGTTTGCCTAAGGCAACCAATTGA
ATCGCTAAGGTTTGGATCTTCTTGTCCATGCCAGGGGAAATAGCTTCTTT
GATGTGCTCAAGAGCCAGCCAAACACCATTCAGCTTCAACACAGGCGAAT
CTTCACCTAACTTAGGATCAGTGCCCAGAAGAAAAGCATCGTAAGATGCT
TTATCTAGTTTCAACTGTCGTATTAGTTTATATTTGATGAGGAATAGGTC
AACGTACCTGTGAACATCGGTGTGGTTGGTCAGTTTAAGCTCAGACAACG
ATTCGTACATATCCTCGCCCTTCAGATTGCAATACGGTAGCTTCATGTCA
TAACAACACGAAATGAGATCTCGATCTTGCCACCATTTCAAGAAATCATA
TGCTTCTTGAACTTCCCCTAAAATACAAAGTGTCGAGGGAATGTGCAAAC
GAACACCGAGGTTATCTCCACGACACAACCAGATCAAATCCAACATATGT
TCGACAGAAAGCTCTAAAGCCAGTTTCGAGTTATTATTCATGCCACATGA
ACGTAGCTTTAAAGCAAGTCCCAGTCTCTCCTTACAATAGTTTCTTGGTT
CAACCAATCTCCAGAAAATTCCAATAGCAACTTTGAAAAGACTCCCAGGT
AGAAGGTCTTCAAGTTCATAAAACTGTCGTAAAGTTTCAGCTTCTTTTGC
CACAATCTTGGTACGTCTTTTGATTTCATTGCAATGAGTTTTGTGTTTCA
CCCAATGATCTTTTTGACATTCTTTGGAGCAATATTTGACGGCCGTACAT
CTTGAACATCTGTTTTCGGCATCACCTTTTGAACAGTTACTGCATTTNTT
TGACGGCCGTACATCTTGAACATCTGTTTTCGGCATCATCTTTTGAACAG
TTACTGCATTTGAATGAAGTGCTTCTTGGAGATACAAAAACGTCactaat
ttttctttcattcatttcaagtttttcaagtCAGCTAAAAAATCAAGAAC
TGGAAAATTAAAATGCATGAAAAATTATAACACAGAACTTTcattaggct
acgtcatatctgcCTTCGCtccgagcgtaaaactcctcctcttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046143-exon-scaffold_106-1491911889:300703..301717 | TCONS_00046143-exon-scaffold_106-1491911889:300703..301717 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1510915933:300703..301717 | TCONS_00046143-exon-scaffold_106-1510915933:300703..301717 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1575043694:300703..301717 | TCONS_00046143-exon-scaffold_106-1575043694:300703..301717 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1491911889:301772..302327 | TCONS_00046143-exon-scaffold_106-1491911889:301772..302327 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1510915933:301772..302327 | TCONS_00046143-exon-scaffold_106-1510915933:301772..302327 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1575043694:301772..302327 | TCONS_00046143-exon-scaffold_106-1575043694:301772..302327 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1491911889:306365..306599 | TCONS_00046143-exon-scaffold_106-1491911889:306365..306599 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1510915933:306365..306599 | TCONS_00046143-exon-scaffold_106-1510915933:306365..306599 | Clytia hemisphaerica | exon |
| TCONS_00046143-exon-scaffold_106-1575043694:306365..306599 | TCONS_00046143-exon-scaffold_106-1575043694:306365..306599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:300703..306599 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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