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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046146 ID=TCONS_00046146|Name=TCONS_00046146|organism=Clytia hemisphaerica|type=transcript|length=516bp
GGTTTTTCTTTATCAGATCTTCCTCGTACTCGACATTGAATTTGACCAAA
GAAACATGTACATTCAAAACAGAATGCTAATTCGTACATCGAGACGTATC
GCGATTGTCTATGTCTGATGGTATGGTTTTGAAATCTGCAGTCTAAAGAG
AGAGAAAAGGATACCTCTTTATCTTCCAATAAGGACAATCTTGGTCGCTG
CAAATCGGATCTTTAAATCCCGCATATTGACAGATGACTTTCCCTTTCTT
TGTACATTGACAAGAGACACATTTCGATTGAGTTGATATATCTATGGTGT
TTCCTAGATCGATTCTGATAGATGTGTTGAATGGGTGTTGGCAAAATGGA
CAGTCGACGCTGATTGGATCACCTTTTTGTGGACAATTAGAGCATACCGT
ATGTCGAGTTTCATTCTCGTCAACTTTGAAGCAAGTAATATTATTTTGGT
CAACGTTGCAATCACAAAATAAACAGCTAGATAACTGGACtgttttttga
aagaatttacTGTTGA Run BLAST on NCBI transcript from alignment at scaffold_106:342337..347408+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046146 ID=TCONS_00046146|Name=TCONS_00046146|organism=Clytia hemisphaerica|type=transcript|length=5072bp|location=Sequence derived from alignment at scaffold_106:342337..347408+ (Clytia hemisphaerica)
GGTTTTTCTTTATCAGATCTTCCTCGTACTCGACATTGAATTTGACCAAA
GAAACATGTACATTCAAAACAGAATGCTAATTCGTACATCGAGACGTATC
GCGATTGTCTATGTCTGATGGTATGGTTTTGAAATCTGCAGTCTAAAGAG
AGAGAAAAGGTAAGATCTAAGTGAACGTATATAAAGAAATTGGGATAGTT
TTGTCTATTTAAGGTACATCATATCCTGTATGAGAAACAATAAGTCTGAA
ATACGTAATACGAATCTTTTGAACAGCTATAGACGCacttagcgagttta
tgtattggCACTTTTGAGTAAGACGGAGTgactaaaacttgaaaaaaccg
CAGTTCTGGCCCACAAAATCGGGGACAGTAAAAGTGCTTGTTTACCGTCG
TTCTCAGCTGATCAGGGTCTAtacaaatcagaagctaacaGAAGAATACA
CATTCATAAACTCGCTATCGTAGTCCGTTCACCATCTAGAATagaccaca
gatctgtaaatcccgaagggctagatttcgtgctttaagcttttcatagc
aaaaaaagtaaatattgcaaaaaatattgttgatattgttttcaaaaatc
tgcgAGGCTTCTGATTTGTCAAGCACTGAAACTCTAATGTAATTGTCACA
TTTCCTACCGAACCACGGCACTCTTTTCATATAAAACTCTGGGAAAGACA
AACCTGGATTAGTCATCAAGTTGGTGCAATTCTCCTCAGAACATTGAAAT
GAATACATGAATCCATTAATTCTTTCGTCCGTTGAACATATCAGATCACC
TTCGTAAGAACACGAACATTTAATATTATCGCTTCCAATTTGAACATTCC
ATGAAGtcaaaggaattttcttctGTCCATTTAAAGGGTGGACACAATAA
GTACATTGATGTTTAGGGAGTGTCGCTAACAATGTCTCACAATCTTGTGT
GTTTCCACATATGGGTTGCCGAATATCCTTATAACGACACGATATGGTTC
CTTGTTTGGTGCAATTGCATGAGATACATTCTGTTTCATTACCAAAGTTA
ACAGAGTGCATAGACGGAATGATTATTGATCGATTGCCAGGTTTCTCACA
GTACGAACAAGGTTCCTTGATAATAATCGcacattttgagcatttttcCG
TTGCGATGCCATTTAAGCCTTTTTTATAACAAGTTGAATGCCCATTAGTG
TTGTTGCATAGACAGTAAGAACAGTGGGATAACTCATATCTTGTTTGAAA
TCTGAAGCCTCTTTTCATGACGCCTCTATTACCCAAGAATTCATATTCCG
TTATCTGACATTCTAAAACAGAAGATGAAATCGTGTAGTTATACTGTGAG
TTAAATTCAAGCCAAAAACCTGCCGAatactttttagaaaaatttgagGA
TTTTCCTCAATcaactagactggagtcgtttataattcgTCTCATACATT
GATATCGGTGTTATATAGTACCATATGTTATGGGATTATGAGGTTGGATA
AACTACAACTTTCCCCTTTCATTTTGTTTGGCTTATTTTCCACTATGCCT
GAAATAGTCGTCTTATTCAAGCTAATACCTCAAAATTAAAAGGAGCTATG
GATGCCGTCAACTTCGAAATAAGCAAAATTATTATAAAACACTCACCTTT
CGGGCAATTTAGTTCATCTTCTTTATCAGAGCATTCGATAACTCGGTTGC
AAAGACTTGACTTCCAAAGCAGCTCTTTCGTTCTGTTACAAACTGTAATG
CTTCCGTTGTGTCTTTCCAAAAATGAATCCCTATCTAAGGAACCGATAGA
AAGAAACAAGTGTTTGTTACTTAGAacttaattaaaaattttattgtaaC
TTTCTTAACCTTAGATTAGACATTGTTTAACGTTGGTTTTCAGTGAAATG
AAAACACCAATAAACTGTGCAATCATTGCATCTTGCTTGGCGGTTTCTAT
GCTATGGGAATATTTTGTCGTAAAAAGTACACGAACCTGAAATTTAGcac
caaaacattcaaaaaatgaaaagaaagtacAAAAATAATCTCAGATCCAA
TTAGTGAAAAATATTTGTCGGCAAAATTTAATCGTTggcaaaaattaata
accgTCAGTTTTTTTACCGTGACAAATTTTCTATCATTAAACTGCTTATA
CCTCCATCACAAGGTGTACAGTAACCATCATTCTGGATAACGTGCTCACA
CCATTTCTTCTTTATCTTCATAAATACCGGTTGCCGTCTCTTCGGATCGC
ATTTTAAAAGACAATGACTTGAGCGCCATCTAAAGGACATCCCACTAGGA
CATAAAGACTTTGATGGTGAATTGCAATCTAAATAGAATTATCAGAATAC
AGTTGAccctcgctaattcgaactcgaggGAAATCACGTCTTATTTCTTC
TAATAGCATAGAGAAACTCGaataatagaaagtattttaagaaggTTTCT
CCTTAGCggggactggaaacaagttcgaattatagaagctCAAATAAGCG
CGAGTTTACTGTATTCATTCATCAACTTGCCCATACAAAAGCTAGCCATA
ATAAAGAAACATTATTTTGGTGGCCATAAATTAGATTAGATGTTAATCTA
TGGATACAACTTGATGGTCAAAAAGAATAGTTGGCTCACGAGTTTACAGA
TGTAAAGTTTGGAATTTTGGCTATCGTTTTTTTTCCTATTACACTTTTAT
CTATTTTGTAAAGAGTGAACACGATTATTGTTCGTACTACGGCAGGagaa
ttttgaaatctttgggTCAAATACAAATCTGATaatcactgggcgaaata
agagatttccaatattggaaatatattgaaaatatgatatttccatatac
ttttgtaaatatggaaatatgactcttctatatttccaaagttgtggaaa
taccatatttcacgatatttccaaatctgaaatatcatattttcgaAATA
TTTCCAACTTAATCTATAGTGGAtaactaagggtcggaaaaatccgaaaa
tcaaatttcagtcgtcccagtaagggtcggaaaaataggaaaatttcaac
tttttaccccctgaaagatcgaaatttggtcaaaattggtcaaattaNca
gtaagggtcggaaaaaaaggaaaatttcaactttttaccccctgaaagat
cgaaatttggtcaaaattggtcaaattattcccgctaagggtcgtaaaat
tcccaaaattttcctttgtattctcctttttagtcccggtaagggttagc
aagcacctcactaaaaaccgggatttttcatctcgtttcttagtgagttc
cactttgacgattttcgaaaaatagaagcctttcaagtgctttgacgcaa
atttgattattttgatactgcaggagcttcgaaagttaaaaatgacgtca
aaaaatcgaatgtttagagcccgaaaacctgggctcaaaacattcgaaaa
agtcgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccccccccccccc
cggatacaCTCTCGAACAGACTAGGTgaatttttaagtattttagaATTC
AATGATAAACATTTACATTTTTGAACTTTAGTTGAATTAGCAAGTTGGTT
GCATCTTTCATAACCTTCACATTTAGTATTGTAATCTCTCTTACAGATCA
ATTGACGAAAATAACAACTACATTGTAAACAGTAGGGTAATTCGTAAAGA
GAAATGAATTGAGATGAACGGTGCTTGATCGTTTGATTCTTGAAAAAACA
ATCTAAGAGAAAAAATATATGGTATCGTTTGATCGCATTGATAGCCGCGT
AACTAgctgactctcgctaattcgaactcgaagtgggaatcttatttgtt
cgaataacagagagattCTAATTATAGAGAATATCTTAAGATGGTTTCTT
CCTAATGGGAACTGAGAAAAAGTTGGGATTataaaagattcgaataatag
aagttcgaataaacAAGAGTCGACAGTACAAACGAAAAGTTTCTTGTATA
ATACAACAATAAGTGGATTGGGCCGAATCACGTCTAACGAACGTCTGTGT
ACAAGGACCTCTTCAGAAGagatttaaaaatttgattatttgaattttct
tttcgaTTATCCAATAGGAATATTATTCGATATTTTATCCAGCGGGGCGA
TGTATGTGATTTATTTTTCCATCAGTGAGGGTTGGGGTCCCAGCTGTTTA
GTGATGTGGGGAAAAGATACCATAAAAAGATCATTTGGACAATTTGATAT
TCCAAGTTCGAATAACGTAATTCCCTACATTTAAAATTACCTGGACTTTG
GAATAATTCTTCAATCATTTTCGTGGTGTAAGTACtgaatctgattggtt
caaaaCTTCCAACAGAAGTGTATTTGCGTTTGCTGAAGCATACTAAATAT
CCATTTTTAAGACAATTGCATGCGAAATAATCTGGGTTGTACATGAACCA
ATGTTCTCCTGGCATTTTCTTCTCTCTTGTGAAAGGTGCAATACAATGGG
TGCATTTCTCTTTAGGATACCTCTTTATCTTCCAATAAGGACAATCTTGG
TCGCTGCAAATCGGATCTTTAAATCCCGCATATTGACAGATGACTTTCCC
TTTCTTTGTACATTGACAAGAGACACATTTCGATTGAGTTGATATATCTA
TGGTGTTTCCTAGATCGATTCTGATAGATGTGTTGAATGGGTGTTGGCAA
AATGGACAGTCGACGCTGATTGGATCACCTTTTTGTGGACAATTAGAGCA
TACCGTATGTCGAGTTTCATTCTCGTCAACTTTGAAGCAAGTAATATTAT
TTTGGTCAACGTTGCAATCACAAAATAAACAGCTAGATAACTGGACtgtt
ttttgaaagaatttacTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046146-exon-scaffold_106-1491911889:342337..342495 | TCONS_00046146-exon-scaffold_106-1491911889:342337..342495 | Clytia hemisphaerica | exon |
| TCONS_00046146-exon-scaffold_106-1510915933:342337..342495 | TCONS_00046146-exon-scaffold_106-1510915933:342337..342495 | Clytia hemisphaerica | exon |
| TCONS_00046146-exon-scaffold_106-1575043694:342337..342495 | TCONS_00046146-exon-scaffold_106-1575043694:342337..342495 | Clytia hemisphaerica | exon |
| TCONS_00046146-exon-scaffold_106-1491911889:347052..347408 | TCONS_00046146-exon-scaffold_106-1491911889:347052..347408 | Clytia hemisphaerica | exon |
| TCONS_00046146-exon-scaffold_106-1510915933:347052..347408 | TCONS_00046146-exon-scaffold_106-1510915933:347052..347408 | Clytia hemisphaerica | exon |
| TCONS_00046146-exon-scaffold_106-1575043694:347052..347408 | TCONS_00046146-exon-scaffold_106-1575043694:347052..347408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_106 | supercontig | scaffold_106:342337..347408 + |
Blast
The following BLAST results are available for this feature:
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