TCONS_00046149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046149
Unique NameTCONS_00046149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046149 ID=TCONS_00046149|Name=TCONS_00046149|organism=Clytia hemisphaerica|type=transcript|length=271bp
NAATGACATTAGAGCGATTACAAGATAttaagaaaaggaaaaattttaaa
tttagagaATTAGAAGAACAGAAAATTAACGGTTTGGCACTAGAAACTGA
GGCGAGATTGATTTGATAAGGGTGTACATTGATGAGAACTAAACGTTTTT
AATGACTGGGTGGGTGGTaatacattttcaaaattgtaaataatgatttt
tttctatttaaagCTCGATTTGAAATACATGTCACAAACACAATTCAATG
ATGCTTCTACATGACACTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_106:7612..7882-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046149 ID=TCONS_00046149|Name=TCONS_00046149|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at scaffold_106:7612..7882- (Clytia hemisphaerica)
NAATGACATTAGAGCGATTACAAGATATTAAGAAAAGGAAAAATTTTAAA
TTTAGAGAATTAGAAGAACAGAAAATTAACGGTTTGGCACTAGAAACTGA
GGCGAGATTGATTTGATAAGGGTGTACATTGATGAGAACTAAACGTTTTT
AATGACTGGGTGGGTGGTAATACATTTTCAAAATTGTAAATAATGATTTT
TTTCTATTTAAAGCTCGATTTGAAATACATGTCACAAACACAATTCAATG
ATGCTTCTACATGACACTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029480XLOC_029480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046149-exon-scaffold_106-1575043694:7612..7882TCONS_00046149-exon-scaffold_106-1575043694:7612..7882Clytia hemisphaericaexon
TCONS_00046149-exon-scaffold_106-1510915933:7612..7882TCONS_00046149-exon-scaffold_106-1510915933:7612..7882Clytia hemisphaericaexon
TCONS_00046149-exon-scaffold_106-1491911889:7612..7882TCONS_00046149-exon-scaffold_106-1491911889:7612..7882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_106supercontigscaffold_106:7612..7882 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56917	0.544879	0	0	0	1.19088	1.43675	0.672533	0.849411	0.583232	0	3.29327	1.48646	0.458059	1.26913	0.340493	0	0.429932	1.78192	1.2431	1.62072	0.790532	0.640663	2.17857	4.19941	0.535411	3.06468	0.817679	2.48072	1.82153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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