TCONS_00046538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046538
Unique NameTCONS_00046538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1716

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046538 ID=TCONS_00046538|Name=TCONS_00046538|organism=Clytia hemisphaerica|type=transcript|length=1716bp
tttctttcagatttttttttgaaataattatatTACAAAATCATAATGAG
ATTGACAAATATCATAACAACAATTTGAAGATATGGGCAAGAGGGATACT
AGAGTGgcatttGTTAACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGC
TCAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGAGACCTTCAT
GGGATGAATTGAAAGAACAAATCAAAGCAACAAGAAAAGGTTCAAGAACT
CTtgaacaatttgaaaaagaaagaaatatgGATTACAGAGCTGAGCTTGA
CAGAGGCagagaaaagtttttcaactctgaaaagAAGaaaaagagaaaga
aaaagcgCACCCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATCA
ACTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGaaatccaa
aaagaaaaagaaaaagcatcACAATAAATCAAAGAGGAAAGAGCAAAAAT
ATGAGAAATCCGAGTCAGAATCAAGCAGTGGTGAAGACAGGGTGGAACAG
GAAAATCATGGACATTTGAACAGAGATGAGAGTAGAAATAACTCAGACAC
AGAAAGGCATGGTGAAAAGaaaaggaaaaaaaggaaaaggaagaaACTGA
GCATTGAAAAATTGACAAACGAGACATATAGTTTACAATGCTAGTCGACT
CAAACGCAATATACTACATCCAGAACGTCTCTTGTACTGATTTTTTCATG
GCTTTATTTTCTTGTCTACTTTGAAATGAGAAGCCAATCTGAAGTGTATT
GACCTTATCCATTTGTTGTCTCAATGGAAACAAGAAGATaaatgaattat
actaaaaaataaaatgttgaaaTGGATTACTAATGGAGTTTATGTCAATG
GATCTAAGAAGTTGAACAGCTTTGTCTTATTGTTGTCGTTATGGTAGGTT
CCTCTTTTGAAAGAAGTCATCAATGGAACCTCTGGCACATGTTTGTACAA
CCCCTTTTCACAAACCCacccaaaatatcgtcccagtGGAAATTGTtatc
taatttttgtccccactgaaaataatcaaataagccaatcctcgctgcaa
aatattgtgctaatTTTTCCTatcctcactgaattttctggctcgaaaac
aatggaattcaaccCCCAGCCATGAAAAACATCGGGTTTTGGTCCATTAT
TTTTCCCCTCAATGGCTCAAAAAACCCCACCGGGTCTGTAAGAAGGGGGT
GTGTTTGTGATTATCCTAAAACTTTCAGCTCTCTTATATTTTTATTCCCT
GGTTAAATTTTCAAACGTAGAACTTGCTATCTGgacttaaaaaaactttt
agtgNAATATTTTTATTCCCTGGTTAAATTTTCAAACGTAGAACTTGCTA
TCTGATGgacttaaaaaaacttttagtgATCCTCTAAATGTATCAAAGGT
ACTTTTATATTTGTTAAAAGAATAGTTAAACTTTTGTAGTTTAAATCGAA
GGTTATATTTTAGATGATCAAATTTTAAGGTATAACTTTTCAAATTTTAG
TGGCCAATCTATGAGATTTGGAATTTAAAATAATTTTTTCAAAATTTGTT
AAAAAAATGAAAAGGGGAATTAATTCTCTATAATTTATCAATAAAAGAAA
GGCTCATAAATTGACCGTATACGACAAGGCCATCTTAATCTTGACAATTC
TTCAGGAAAAAGTGGG
Run BLAST on NCBI

protein sequence of TCONS_00046538-protein

>TCONS_00046538-protein ID=TCONS_00046538-protein|Name=TCONS_00046538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MGKRDTRVAFVNPVAASRSSGPAQGGPSIKDYLSRPRPSWDELKEQIKAT
RKGSRTLEQFEKERNMDYRAELDRGREKFFNSEKKKKRKKKRTRSSSSSS
STRSSSTSSTNSSINNRRHKKSKKKKKKHHNKSKRKEQKYEKSESESSSG
EDRVEQENHGHLNRDESRNNSDTERHGEKKRKKRKRKKLSIEKLTNETYS
LQC
Run BLAST on NCBI

transcript from alignment at scaffold_113:265734..273856-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046538 ID=TCONS_00046538|Name=TCONS_00046538|organism=Clytia hemisphaerica|type=transcript|length=8123bp|location=Sequence derived from alignment at scaffold_113:265734..273856- (Clytia hemisphaerica)
TTTCTTTCAGATTTTTTTTTGAAATAATTATATTACAAAATCATAATGAG
ATTGACAAATATCATAACAACAATTTGAAGATATGGGCAAGAGGGATACT
AGAGTGGTAAGTCTTTTATTCACTTTCTAATCCCTTAAAAATAATAGTCC
TCTAGAATAGACATAATGTCATTCGATCCCAATCAAAAATAGTGTGACAT
TTTGAAAAATGCCCAAAAACAACTTTTTGTCATAGCTGATGAAGTCTTAA
TCGATAAGCCTTGAAATTTTACAATGTTGTGGGAAATACTAAGATAATTA
GATAAAAAATTTTTTTTTTCGTTAATTGGGCTAAAAATGTGGCTTCAACT
CAAAATTTGTATCTTTTTTAGAAATGTAAGCCACACAAATTAGATAAGAG
ATCTTAGAATGGGACTTTCTTAACTTGACAGAGGAAAGGTTAAATTAAAA
AAAAAAAGTTAAATGCACATACCTTCTAGCTGTTAAATGTACTTGTTTGC
GGCCTACTTTTCGATAATTTTTAATGTGACTTTGTAAGCCACAAAATTGT
ACTTACAACAAAATTTTTGTAATTTCTTACACTTACTGGTGTTATACTTT
GATGATTGAGTGCCAAAAACTTAAAAAATGTGAGACATAAAATTTCACCT
ATATTTCACCTATTCACCTATATTCACCTATTCACCTATATTTCCCTTGT
GTAAGCCACATTTTTGCCCACTTAACAAACTGTAAGCCACAAATCAGTGC
AGCTAATGGAAAATTTAGCCCTTTGCTGGCATTGCTGAAAAAAAAGTATA
TTTCTGACTGTTTCCATTATTGAGAACTCAGCCTTCAAAACTTCTTGGTA
GGGTAAGCCAAATGACCAGTAAGCCACATTTTTTACCCACACTTCATTTG
CTTGTAACTCCCCTTTCAGTAAGCTACAAAAATTCGCCCTTTATGCAATG
GATAGCTAATTTCCTCAGCTTAACCATCAAAGCGATCCTAAGTGTAAGCC
ACGTAATTTTCCCAAGTTATGGTCAATTTAGTGGCTGACAGTAAAAATGT
CACAAAACAGGGGTTTATTTTTGATTGGGATCATTCCAAAGCGCATGTCA
TGTATTAATTACTTTTTCTGAGTCTTTGAAAATGGAACAACTTTAGATTA
GAATGAAAAACAGAATTAAAATCAGAATATTTGTATTTTTTACTTTAGGT
GCAACAATTTAATTCTTAGTCTACGATTTTATTTGCTTGTTTTTTATACT
GGGATACCCAGCTGGGATTTTCTTTTGACCTTTCAAAATGAACAAATTAT
CTCATTTTTAGTTAATTTCGTCATTTATGCATTAATTCTCATGGTATTTA
ATCAAAACATTTTTAGGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCCT
CAGGGCCAGCTCAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCG
AGACCTTCATGGTATGCAGCATAACTTTTTGATTTCTTTTATAATACTGG
GATCTTTTATCTCTCTTTTTGTCTTTCTATTTTAAGAACAAGGTCCAAAA
AGAAAAGTAGGGAGTGAAAACACCATCTCATGAAAAGTTTTTTCTTCTTA
GAAATCTATAATGAGTTATTGTTATCTTAGGGATGAATTGAAAGAACAAA
TCAAAGCAACAAGAAAAGGTTCAAGAACTCTTGAACAATTTGAAAAAGAA
AGAAATATGGTATTAATGTTATCACAATTATTTATTATTTCTAAAAAAAT
CATCCACTGAAAGGTAAAATTACACAACTTTCAAGATGTTGTTCCTGGAC
AATTATAAGCCCCCTCTAGCGGACCCTCAATTCACGCAATTTTTTTCGAA
ATTCACACATATTCATGAAGATTTTTCTCAAATTTCACTCAAATCCAATT
TTCAGAAAATCAGGAAATTTTTTGGCAAATATCAGGGAAACATTTGAAAA
TCTGGAAAATTGCACATAATTGGTAAACAAAGAGAAATTTATCCACACAC
AAAATAGCCCAGATTCACACTTATTCATGCAATCTTGAAGTGGATTTTCA
TGTCCAGGCTAATTTTTTCAATTCATGCATTCACATAACTTTTTTTTCAA
TTTTCACGCATTCACGCTACTGAAAAAGTTCATTCACGCGTTCACGGAAA
CCGCTGGGGGCCCCAATTATATATATCAAAACTTAGTGTATGGATATTTT
AGTTGACTTGAATCGAAAATTCTGGTTCGATCTGGTTTATTATCCAAACA
ATTTATCTAAAGTCACTGGCACCTTTTCCTTTAATGATCTTATTATGTTT
TTTTTATGTTTTAAACTGTAGGATTACAGAGCTGAGCTTGACAGAGGCAG
AGAAAAGTTTTTCAACTCTGAAAAGAAGGTATACGAGTAACTTTAATCCT
AATGCTTACAGTATTTTATCAGATGATAATTAAGTCTATTGTGCAAAAGT
TTAAATTTTAGCAATTATTTGAAGGTTTATCTTACTTTGTTTTTTTACAG
AAAAAGAGAAAGAAAAAGCGCACCGTAAGCACATTTGATTATTTAACATG
AAACTACAAGCATTTTAAAATAATTATTTTTCTTATTACAATATATTCTT
TATCAATGTACAATGTTATTCTCTCTGAGAATAGATTTCCTCTCGATTAG
TTATTGGACCTTGGAGGTAGCTCCAGTAATTCTGCAAACTCTGTGAGATT
TGAAGAATCCCTTAGATAATTTTGTTAATTGAAGTCCATTTTCAGTAAGA
GATAAATACAAAGTATTGTATTGCATTACAACATTGATAATTGTTATAAT
ACCACCATTTTCATATTACACATTTAATTTGTTGTTTTTTTCTTGTTTTG
CTTTTCCTTTAAGCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCAT
CAACTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGGTAAAA
GATTCCCTTTAAGATTCGAAAAATTACTAACTTTTGTGCCCCTATAGTGG
ATTTTCAGTAGTGGATTTTCAAGATTTTATTAAATTGGTTGGTGCTCATT
ATAATTGGCGCAAAATTTGCTTATATGTTTGGTAAGGGTTGTTTGCTTGG
TAAAAAAAAACAAACATGAAAAGAGGAAATTTGGTAAAAGCTACCAAAAT
ATAAAAGAATTGTCAGTGACCACCAATAAGAGTAAAGATAATGAACTCTT
GAAATCAATTCTCGTTGTTGTATTTATAAAATATTGTATATAATATCAGT
CTAACCTTAAGGCATAATTTAAAAGATTCTGTTAANCATGTTTGGTCAGG
GTTGTTTGCTTGGTAAAAAAAAACAAACATGAAAAGAGGAAATTTGGTAA
AAGCTACCAAAATATAAAAGAATTGTCAGTTACCACCAATAAGAGTAAAG
ATAATTAACTCTTGAAATCAATTCTCGTTGTTGTATTTATAAAATATTGT
ATATAATATCAGTCTAACCTTAAGGCATAATTTAAAAGATTCTGTTAACC
ATCTTGTTTGTGACAATAAAAAATAATAAAATAAATTATTTTATTCCTTT
CTTTAGAAATCCAAAAAGAAAAAGAAAAAGCATCACAATAAATCAAAGGT
TTGAACTTTATTATAACTTTAGATATTTTAAATAATTATCTTGAGCTATG
GATCACTTTTGGTTTCACAATTTACAAAACGAAAGTGCTTTGTATCTCAC
ACGATAAAAAAACTTTCTCGGATATGCATCTTGGATGTAACTCAGCCCCT
AAACTAACTTGTATATTTTCCTGCTTTCAAATTTTCAAATCATTCTACAT
TTTAGAGGAAAGAGCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAGT
GGCGAAGACTGGGTGGAACAGGTATATCTAAATTGGTGGAAGTGAATCTA
TGTATCCTTTTTTGAAAAGTTGCTATATATTGGAAAGTTTCAGTTTCTTA
CTATATGCATTATTGAAAGATTGGTTCGTCTTTCAAAATGAATTTACTTT
AACAAAATCACACTAAATTGTAACAAAACTTGGAGCAAAATTTAGTGGGT
GTTTTCATCAAATATTGGTTTTTGAACGGTGAACCCCAGGCCTCATCTGT
CTCATTAACTTAAACTTTGATTGTTTTATTAAGGAAAATCATGGACATTT
GAACAGAGATGAAAGTAGAAGTAACTCAAACACAGAAAGGCATGATGAAA
AGGTGTGTTGAATCTCCTTAGACTAAATTGATTTCTATTCAGGGTTCACA
GTTCTACCTTCTTAGAGGGATTCCTTTCCTGCTGTAAAAAAGAGGTATTT
CGGTGTCAATAAAACAGCAAGATTCTGGTCTCGAAGAATTCTGTTTTAGA
AGTAAACTTGATTCAAGCACTGTACAACTTATAAATATGGTTATAAATTG
ATGTAATATCCATATTTCTTTACAATTTTATAGAAAAGGAAAAAAAGGAA
AAGGAAGAAACGAGAGCATTGAAAAATTGACAAATGAGACATAGTTCATG
ATGCTAGTCGACTCAAACGCAATATATTACATCCAGAACCTGCCAGAACG
TCTCTTGTACTGATTTTTTCATGGCTTTATTTTCTTGTCTACTTTGAAAT
GGGAAGCCAATCCGAAGTGTATTGACCTTAACCATTTGTTGTCTCAATGG
AAACAAGAAGATATTAATTTTCAATAACTAGAAAAATGACATAGAGCAAA
GATAATCACCAAGAAGTTTGAACTTGGACAGTTTTTCATCATTTTATCTA
TAATGCAAACTCCATCGTATTTTAAATAGAGATAGTTTATATATATTTTA
GGATAATCTGATATAAATATTTGTGTACAAGAAAACTATATGAATTTGTT
GATCAAATAAAAAAATGTATGAATTTGTATATCAAATCTGCTGAAGGTAC
AACTTAAAAAAGATAAAGATAATATCAAAAATGTTTTTATGGTCATATCT
TAGTATTCAAAGCTCTTCCGTCTCCAAATTTAAAAGAAATTCTGCATCGT
TTGAAGAATCTTCGATAATTTGTTGTTCAAAGTCCACTGTTGTCTAAGAT
AAATACTTTGCTTTGATAACTGCTGTCATCATTAGAGTGTGTAGTTTTGA
CTGAATTAAAACACATGGCAGGTTCATAATGTCACAACCTGGTTCATTCG
TTTATACTATCTAATCAAGTTGTCACAATTTACAATTTTTTTCGCTTCAG
ATAAACAAAAACAAATGAATTATACTAAAAAGCAAAATGTTGAAATGGAT
TATTAATGGAGTATGTCAATGGATCTAAGAAGTTGAACAGCTTTGTCTTA
TTGTTGTCGTTATGGTAATTTCCTCTTTTGAAAGAAGTCATCAATGGAAC
CTCTGGCAGATGTTTGTACAACCCCTTTTCACAAACCCACCCAAAATATC
GTCCCAGTGGAAATTGTTATCTAATTTTTGTCCCCACTGAAAATAATCAA
ANTAAAAAGAAAGTACTTTGTATCTCACACGATAAAAAAACTTTCTCGGA
TATGCATCTTGGATGTAACTCAGCCCCTAGACTAACTTGTATATTTTCCT
GCTTTCAAATTTTCAAATCATTCTACATTTTAGAGGAAAGAGCAAAAATA
TGAGAAATCCGAGTCAGAATCAAGCAGTGGTGAAGACAGGGTGGAACAGG
TATATCTAAATTGGTGGAAGTGAATCTATGTATCCTTTTTTGAAAAGTTG
CTATATATTGGAAAGTTTCAATTTCTTACCATGCATTATTGAAAGATTGG
TTCGTCTTTCAAAATGAATTTACTTTAACAAAATCACACTGAATTGTAAC
AAAACTTGGAGCAAAATTTAGTGGGTGTTTTCGTCAAATATTGGTTTTTG
AACGGTGAACCCAAGGCCTCGTCTATCTCATTAACTTAAACTTCGATTGT
TTTATTAAGGAAAATCATGGACATTTGAACAGAGATGAGAGTAGAAATAA
CTCAGACACAGAAAGGCATGGTGAAAAGGTGTGTTGAATCTCCTCAGACT
AAATTGATTTCTATTCACAGTTCTACCTTCTTAGAGGGATTCCTTTCCTA
CTGTAAAAAAGAGGTATTTTGGTGTCAATAAAGCAGCAAGATTCTGGTCT
CGAAGAATTCTGTTTTATTAGAAGTGAACTTGATTCAAGCACTGTACAAC
TCATAAATATGGTTATAAATTGATGTAATATTCACATTTCTTTACAATTT
TATAGAAAAGGAAAAAAAGGAAAAGGAAGAAACTGAGCATTGAAAAATTG
ACAAACGAGACATATAGTTTACAATGCTAGTCGACTCAAACGCAATATAC
TACATCCAGAACGTCTCTTGTACTGATTTTTTCATGGCTTTATTTTCTTG
TCTACTTTGAAATGAGAAGCCAATCTGAAGTGTATTGACCTTATCCATTT
GTTGTCTCAATGGAAACAAGAAGATATTAATTTTCAATAACTAAAATCAG
CGCCGAAATATTTGGCACAAAAGGGGAATTCTCTCAAAGCTTTGAAACCG
CAAGTGATTTTTAAGTGCCTTGAAGTTCAGTTTGGAAGTAGAGTTTCTAA
CTCCGAGTTTTAACATTAGACTTAAGACTTAAAACCTGAGAATATACCCT
TGAAGCCACTTAACCCCTCCCAAATCGAAAAATCCAATGAAGCAAAGTGG
AAGTACTGAAACTACAATTCTCGTCCGACCTTTAAATTCTGAAAAACGTT
AAAATACCTAAAAATTGCCAATTTATTTCGACGCCGATTGTAGAAAAATG
ACATAGAACAAAGATAATCACCAAGAAGTTTGAACTTTGACAGTTTTTCA
TCATTTGGTCATCTATTATGGATTTAATGCAAACTCAATTGTATTTTAAA
TAGAGATATATTTTAGGATAATCTAATATAAATATTTGTGTACAAGAAAA
CAAATAACATAAATATGAATTTGTATATCAAATCTACTGAAGGTGCGACT
TAAAAAAAGATAAAGATAATATCAAAAATGTTTTTATGGTCATATCTTAG
TATTCAAAGCTCTTCCATCTCCAAATTTAAAAGAAATTCTGCATCATTTG
AAGAATCTTCGATAATTTGTTGTTCAAAGTCCACTGTTGTTTAAGATAAA
TACTTTGCTTTGATAACTGCTACCATCATTGACTGAATTAAAACACATGG
CACATATTCATAATGTCACAACCTGGTTAATTTTTTTATACTATCTAATC
AAGCTGTCACAATTTACAATTTTTTTCGCTTCAGATAAACAAAAACAAAT
GAATTATACTAAAAAATAAAATGTTGAAATGGATTACTAATGGAGTTTAT
GTCAATGGATCTAAGAAGTTGAACAGCTTTGTCTTATTGTTGTCGTTATG
GTAGGTTCCTCTTTTGAAAGAAGTCATCAATGGAACCTCTGGCACATGTT
TGTACAACCCCTTTTCACAAACCCACCCAAAATATCGTCCCAGTGGAAAT
TGTTATCTAATTTTTGTCCCCACTGAAAATAATCAAATAAGCCAATCCTC
GCTGCAAAATATTGTGCTAATTTTTCCTATCCTCACTGAATTTTCTGGCT
CGAAAACAATGGAATTCAACCCCCAGCCATGAAAAACATCGGGTTTTGGT
CCATTATTTTTCCCCTCAATGGCTCAAAAAACCCCACCGGGTCTGTAAGA
AGGGGGTGTGTTTGTGATTATCCTAAAACTTTCAGCTCTCTTATATTTTT
ATTCCCTGGTTAAATTTTCAAACGTAGAACTTGCTATCTGGACTTAAAAA
AACTTTTAGTGNAATATTTTTATTCCCTGGTTAAATTTTCAAACGTAGAA
CTTGCTATCTGATGGACTTAAAAAAACTTTTAGTGATCCTCTAAATGTAT
CAAAGGTACTTTTATATTTGTTAAAAGAATAGTTAAACTTTTGTAGTTTA
AATCGAAGGTTATATTTTAGATGATCAAATTTTAAGGTATAACTTTTCAA
ATTTTAGTGGCCAATCTATGAGATTTGGAATTTAAAATAATTTTTTCAAA
ATTTGTTAAAAAAATGAAAAGGGGAATTAATTCTCTATAATTTATCAATA
AAAGAAAGGCTCATAAATTGACCGTATACGACAAGGCCATCTTAATCTTG
ACAATTCTTCAGGAAAAAGTGGG

Coding sequence (CDS) from alignment at scaffold_113:265734..273856-

>TCONS_00046538 ID=TCONS_00046538|Name=TCONS_00046538|organism=Clytia hemisphaerica|type=CDS|length=6120bp|location=Sequence derived from alignment at scaffold_113:265734..273856- (Clytia hemisphaerica)
AAAAGGAAAAAAAGGAAAAGGAAGAAACTGAGCATTGAAAAATTGACAAA
CGAGACATATAGTTTACAATGCTAGGAAAATCATGGACATTTGAACAGAG
ATGAGAGTAGAAATAACTCAGACACAGAAAGGCATGGTGAAAAGAGGAAA
GAGCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAGTGGTGAAGACAG
GGTGGAACAGAAATCCAAAAAGAAAAAGAAAAAGCATCACAATAAATCAA
AGCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATCAACTTCATCA
ACAAATTCCTCAATCAATAACAGAAGACACAAGAAAAAGAGAAAGAAAAA
GCGCACCGATTACAGAGCTGAGCTTGACAGAGGCAGAGAAAAGTTTTTCA
ACTCTGAAAAGAAGGGATGAATTGAAAGAACAAATCAAAGCAACAAGAAA
AGGTTCAAGAACTCTTGAACAATTTGAAAAAGAAAGAAATATGGCATTTG
TTAACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGCTCAGGGTGGTCCA
AGTATCAAGGATTATCTCAGTCGTCCGAGACCTTCATGATGGGCAAGAGG
GATACTAGAGTGAAAAGGAAAAAAAGGAAAAGGAAGAAACTGAGCATTGA
AAAATTGACAAACGAGACATATAGTTTACAATGCTAGGAAAATCATGGAC
ATTTGAACAGAGATGAGAGTAGAAATAACTCAGACACAGAAAGGCATGGT
GAAAAGAGGAAAGAGCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAG
TGGTGAAGACAGGGTGGAACAGAAATCCAAAAAGAAAAAGAAAAAGCATC
ACAATAAATCAAAGCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCA
TCAACTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGAAAAA
GAGAAAGAAAAAGCGCACCGATTACAGAGCTGAGCTTGACAGAGGCAGAG
AAAAGTTTTTCAACTCTGAAAAGAAGGGATGAATTGAAAGAACAAATCAA
AGCAACAAGAAAAGGTTCAAGAACTCTTGAACAATTTGAAAAAGAAAGAA
ATATGGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGCT
CAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGAGACCTTCATG
ATGGGCAAGAGGGATACTAGAGTGAAAAGGAAAAAAAGGAAAAGGAAGAA
ACTGAGCATTGAAAAATTGACAAACGAGACATATAGTTTACAATGCTAGG
AAAATCATGGACATTTGAACAGAGATGAGAGTAGAAATAACTCAGACACA
GAAAGGCATGGTGAAAAGAGGAAAGAGCAAAAATATGAGAAATCCGAGTC
AGAATCAAGCAGTGGTGAAGACAGGGTGGAACAGAAATCCAAAAAGAAAA
AGAAAAAGCATCACAATAAATCAAAGCGTTCTTCCTCTTCTTCCTCTTCT
ACACGTTCATCATCAACTTCATCAACAAATTCCTCAATCAATAACAGAAG
ACACAAGAAAAAGAGAAAGAAAAAGCGCACCGATTACAGAGCTGAGCTTG
ACAGAGGCAGAGAAAAGTTTTTCAACTCTGAAAAGAAGGGATGAATTGAA
AGAACAAATCAAAGCAACAAGAAAAGGTTCAAGAACTCTTGAACAATTTG
AAAAAGAAAGAAATATGGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCC
TCAGGGCCAGCTCAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCC
GAGACCTTCATGATGGGCAAGAGGGATACTAGAGTGAAAAGGAAAAAAAG
GAAAAGGAAGAAACTGAGCATTGAAAAATTGACAAACGAGACATATAGTT
TACAATGCTAGGAAAATCATGGACATTTGAACAGAGATGAGAGTAGAAAT
AACTCAGACACAGAAAGGCATGGTGAAAAGAGGAAAGAGCAAAAATATGA
GAAATCCGAGTCAGAATCAAGCAGTGGTGAAGACAGGGTGGAACAGAAAT
CCAAAAAGAAAAAGAAAAAGCATCACAATAAATCAAAGCGTTCTTCCTCT
TCTTCCTCTTCTACACGTTCATCATCAACTTCATCAACAAATTCCTCAAT
CAATAACAGAAGACACAAGAAAAAGAGAAAGAAAAAGCGCACCGATTACA
GAGCTGAGCTTGACAGAGGCAGAGAAAAGTTTTTCAACTCTGAAAAGAAG
GGATGAATTGAAAGAACAAATCAAAGCAACAAGAAAAGGTTCAAGAACTC
TTGAACAATTTGAAAAAGAAAGAAATATGGCATTTGTTAACCCTGTTGCA
GCTTCAAGGTCCTCAGGGCCAGCTCAGGGTGGTCCAAGTATCAAGGATTA
TCTCAGTCGTCCGAGACCTTCATGATGGGCAAGAGGGATACTAGAGTGAA
AAGGAAAAAAAGGAAAAGGAAGAAACTGAGCATTGAAAAATTGACAAACG
AGACATATAGTTTACAATGCTAGGAAAATCATGGACATTTGAACAGAGAT
GAGAGTAGAAATAACTCAGACACAGAAAGGCATGGTGAAAAGAGGAAAGA
GCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAGTGGTGAAGACAGGG
TGGAACAGAAATCCAAAAAGAAAAAGAAAAAGCATCACAATAAATCAAAG
CGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATCAACTTCATCAAC
AAATTCCTCAATCAATAACAGAAGACACAAGAAAAAGAGAAAGAAAAAGC
GCACCGATTACAGAGCTGAGCTTGACAGAGGCAGAGAAAAGTTTTTCAAC
TCTGAAAAGAAGGGATGAATTGAAAGAACAAATCAAAGCAACAAGAAAAG
GTTCAAGAACTCTTGAACAATTTGAAAAAGAAAGAAATATGGCATTTGTT
AACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGCTCAGGGTGGTCCAAG
TATCAAGGATTATCTCAGTCGTCCGAGACCTTCATGATGGGCAAGAGGGA
TACTAGAGTGAAAAGGAAAAAAAGGAAAAGGAAGAAACTGAGCATTGAAA
AATTGACAAACGAGACATATAGTTTACAATGCTAGGAAAATCATGGACAT
TTGAACAGAGATGAGAGTAGAAATAACTCAGACACAGAAAGGCATGGTGA
AAAGAGGAAAGAGCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAGTG
GTGAAGACAGGGTGGAACAGAAATCCAAAAAGAAAAAGAAAAAGCATCAC
AATAAATCAAAGCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATC
AACTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGAAAAAGA
GAAAGAAAAAGCGCACCGATTACAGAGCTGAGCTTGACAGAGGCAGAGAA
AAGTTTTTCAACTCTGAAAAGAAGGGATGAATTGAAAGAACAAATCAAAG
CAACAAGAAAAGGTTCAAGAACTCTTGAACAATTTGAAAAAGAAAGAAAT
ATGGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGCTCA
GGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGAGACCTTCATGAT
GGGCAAGAGGGATACTAGAGTGAAAAGGAAAAAAAGGAAAAGGAAGAAAC
TGAGCATTGAAAAATTGACAAACGAGACATATAGTTTACAATGCTAGGAA
AATCATGGACATTTGAACAGAGATGAGAGTAGAAATAACTCAGACACAGA
AAGGCATGGTGAAAAGAGGAAAGAGCAAAAATATGAGAAATCCGAGTCAG
AATCAAGCAGTGGTGAAGACAGGGTGGAACAGAAATCCAAAAAGAAAAAG
AAAAAGCATCACAATAAATCAAAGCGTTCTTCCTCTTCTTCCTCTTCTAC
ACGTTCATCATCAACTTCATCAACAAATTCCTCAATCAATAACAGAAGAC
ACAAGAAAAAGAGAAAGAAAAAGCGCACCGATTACAGAGCTGAGCTTGAC
AGAGGCAGAGAAAAGTTTTTCAACTCTGAAAAGAAGGGATGAATTGAAAG
AACAAATCAAAGCAACAAGAAAAGGTTCAAGAACTCTTGAACAATTTGAA
AAAGAAAGAAATATGGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCCTC
AGGGCCAGCTCAGGGTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGA
GACCTTCATGATGGGCAAGAGGGATACTAGAGTGAAAAGGAAAAAAAGGA
AAAGGAAGAAACTGAGCATTGAAAAATTGACAAACGAGACATATAGTTTA
CAATGCTAGGAAAATCATGGACATTTGAACAGAGATGAGAGTAGAAATAA
CTCAGACACAGAAAGGCATGGTGAAAAGAGGAAAGAGCAAAAATATGAGA
AATCCGAGTCAGAATCAAGCAGTGGTGAAGACAGGGTGGAACAGAAATCC
AAAAAGAAAAAGAAAAAGCATCACAATAAATCAAAGCGTTCTTCCTCTTC
TTCCTCTTCTACACGTTCATCATCAACTTCATCAACAAATTCCTCAATCA
ATAACAGAAGACACAAGAAAAAGAGAAAGAAAAAGCGCACCGATTACAGA
GCTGAGCTTGACAGAGGCAGAGAAAAGTTTTTCAACTCTGAAAAGAAGGG
ATGAATTGAAAGAACAAATCAAAGCAACAAGAAAAGGTTCAAGAACTCTT
GAACAATTTGAAAAAGAAAGAAATATGGCATTTGTTAACCCTGTTGCAGC
TTCAAGGTCCTCAGGGCCAGCTCAGGGTGGTCCAAGTATCAAGGATTATC
TCAGTCGTCCGAGACCTTCATGATGGGCAAGAGGGATACTAGAGTGAAAA
GGAAAAAAAGGAAAAGGAAGAAACTGAGCATTGAAAAATTGACAAACGAG
ACATATAGTTTACAATGCTAGGAAAATCATGGACATTTGAACAGAGATGA
GAGTAGAAATAACTCAGACACAGAAAGGCATGGTGAAAAGAGGAAAGAGC
AAAAATATGAGAAATCCGAGTCAGAATCAAGCAGTGGTGAAGACAGGGTG
GAACAGAAATCCAAAAAGAAAAAGAAAAAGCATCACAATAAATCAAAGCG
TTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATCAACTTCATCAACAA
ATTCCTCAATCAATAACAGAAGACACAAGAAAAAGAGAAAGAAAAAGCGC
ACCGATTACAGAGCTGAGCTTGACAGAGGCAGAGAAAAGTTTTTCAACTC
TGAAAAGAAGGGATGAATTGAAAGAACAAATCAAAGCAACAAGAAAAGGT
TCAAGAACTCTTGAACAATTTGAAAAAGAAAGAAATATGGCATTTGTTAA
CCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGCTCAGGGTGGTCCAAGTA
TCAAGGATTATCTCAGTCGTCCGAGACCTTCATGATGGGCAAGAGGGATA
CTAGAGTGAAAAGGAAAAAAAGGAAAAGGAAGAAACTGAGCATTGAAAAA
TTGACAAACGAGACATATAGTTTACAATGCTAGGAAAATCATGGACATTT
GAACAGAGATGAGAGTAGAAATAACTCAGACACAGAAAGGCATGGTGAAA
AGAGGAAAGAGCAAAAATATGAGAAATCCGAGTCAGAATCAAGCAGTGGT
GAAGACAGGGTGGAACAGAAATCCAAAAAGAAAAAGAAAAAGCATCACAA
TAAATCAAAGCGTTCTTCCTCTTCTTCCTCTTCTACACGTTCATCATCAA
CTTCATCAACAAATTCCTCAATCAATAACAGAAGACACAAGAAAAAGAGA
AAGAAAAAGCGCACCGATTACAGAGCTGAGCTTGACAGAGGCAGAGAAAA
GTTTTTCAACTCTGAAAAGAAGGGATGAATTGAAAGAACAAATCAAAGCA
ACAAGAAAAGGTTCAAGAACTCTTGAACAATTTGAAAAAGAAAGAAATAT
GGCATTTGTTAACCCTGTTGCAGCTTCAAGGTCCTCAGGGCCAGCTCAGG
GTGGTCCAAGTATCAAGGATTATCTCAGTCGTCCGAGACCTTCATGATGG
GCAAGAGGGATACTAGAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029702XLOC_029702Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046538-proteinTCONS_00046538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046538-exon-scaffold_113-1575043694:273751..273856TCONS_00046538-exon-scaffold_113-1575043694:273751..273856Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:272396..272490TCONS_00046538-exon-scaffold_113-1575043694:272396..272490Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:272148..272226TCONS_00046538-exon-scaffold_113-1575043694:272148..272226Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:271479..271535TCONS_00046538-exon-scaffold_113-1575043694:271479..271535Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:271333..271356TCONS_00046538-exon-scaffold_113-1575043694:271333..271356Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:270913..270993TCONS_00046538-exon-scaffold_113-1575043694:270913..270993Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:270259..270300TCONS_00046538-exon-scaffold_113-1575043694:270259..270300Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:268208..268273TCONS_00046538-exon-scaffold_113-1575043694:268208..268273Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:267879..267947TCONS_00046538-exon-scaffold_113-1575043694:267879..267947Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:267432..267651TCONS_00046538-exon-scaffold_113-1575043694:267432..267651Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1575043694:265734..266610TCONS_00046538-exon-scaffold_113-1575043694:265734..266610Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:273751..273856TCONS_00046538-exon-scaffold_113-1510915933:273751..273856Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:272396..272490TCONS_00046538-exon-scaffold_113-1510915933:272396..272490Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:272148..272226TCONS_00046538-exon-scaffold_113-1510915933:272148..272226Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:271479..271535TCONS_00046538-exon-scaffold_113-1510915933:271479..271535Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:271333..271356TCONS_00046538-exon-scaffold_113-1510915933:271333..271356Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:270913..270993TCONS_00046538-exon-scaffold_113-1510915933:270913..270993Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:270259..270300TCONS_00046538-exon-scaffold_113-1510915933:270259..270300Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:268208..268273TCONS_00046538-exon-scaffold_113-1510915933:268208..268273Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:267879..267947TCONS_00046538-exon-scaffold_113-1510915933:267879..267947Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:267432..267651TCONS_00046538-exon-scaffold_113-1510915933:267432..267651Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1510915933:265734..266610TCONS_00046538-exon-scaffold_113-1510915933:265734..266610Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:273751..273856TCONS_00046538-exon-scaffold_113-1491911889:273751..273856Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:272396..272490TCONS_00046538-exon-scaffold_113-1491911889:272396..272490Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:272148..272226TCONS_00046538-exon-scaffold_113-1491911889:272148..272226Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:271479..271535TCONS_00046538-exon-scaffold_113-1491911889:271479..271535Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:271333..271356TCONS_00046538-exon-scaffold_113-1491911889:271333..271356Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:270913..270993TCONS_00046538-exon-scaffold_113-1491911889:270913..270993Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:270259..270300TCONS_00046538-exon-scaffold_113-1491911889:270259..270300Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:268208..268273TCONS_00046538-exon-scaffold_113-1491911889:268208..268273Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:267879..267947TCONS_00046538-exon-scaffold_113-1491911889:267879..267947Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:267432..267651TCONS_00046538-exon-scaffold_113-1491911889:267432..267651Clytia hemisphaericaexon
TCONS_00046538-exon-scaffold_113-1491911889:265734..266610TCONS_00046538-exon-scaffold_113-1491911889:265734..266610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:265734..273856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566805	0.527694	0.403034	0.174834	2.20003	1.55633	1.44557	2.36649	2.30572	1.99467	2.29328	2.79846	1.88469	2.07294	1.23398	1.31843	1.37944	1.30265	0.379986	0.639372	1.27346	1.18156	0.187653	0.701026	2.01303	1.97369	0.894028	0.661655	0.651751	0.538365
Blast
[Close]
BLAST of TCONS_00046538 vs. Swiss-Prot (Human)
Match: F133B (Protein FAM133B OS=Homo sapiens GN=FAM133B PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.357e-23
Identity = 43/81 (53.09%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:   83 MGKRDTRVAFVNPVAASRSSGPAQG-GPSIKDYLSRPRPSWDELKEQIKATRKGSRTLEQFEKERNMDYRAELDRGREKFF 322
            MGKRD RVA++NP+A +RS GP Q  GP+I+DYL+RPRP+W+E+KEQ++  +KGS+ L +FE++ N +++ EL++ REK  
Sbjct:    1 MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKLL 81
The following BLAST results are available for this feature:
BLAST of TCONS_00046538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F133B3.357e-2353.09Protein FAM133B OS=Homo sapiens GN=FAM133B PE=1 SV... [more]
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