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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046665 ID=TCONS_00046665|Name=TCONS_00046665|organism=Clytia hemisphaerica|type=transcript|length=2929bpRun BLAST on NCBI protein sequence of TCONS_00046665-protein >TCONS_00046665-protein ID=TCONS_00046665-protein|Name=TCONS_00046665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp MAMNFFRKRSKPDGVGNDWKATGSFVRKPVKGWLHSDRLLESSGVTYEAKRun BLAST on NCBI transcript from alignment at scaffold_116:609553..620193+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046665 ID=TCONS_00046665|Name=TCONS_00046665|organism=Clytia hemisphaerica|type=transcript|length=10641bp|location=Sequence derived from alignment at scaffold_116:609553..620193+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:609553..620193+ >TCONS_00046665 ID=TCONS_00046665|Name=TCONS_00046665|organism=Clytia hemisphaerica|type=CDS|length=20280bp|location=Sequence derived from alignment at scaffold_116:609553..620193+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046665 vs. Swiss-Prot (Human)
Match: SHC1 (SHC-transforming protein 1 OS=Homo sapiens GN=SHC1 PE=1 SV=4) HSP 1 Score: 228.024 bits (580), Expect = 5.382e-64 Identity = 161/513 (31.38%), Postives = 237/513 (46.20%), Query Frame = 3
Query: 174 GNDWKATGSFVRKPVKGWLHSDRLLESSGVTYEAKYIGAVKIIESMRNVPFEHRGAVVREAISRCC-----LQSKLFNFKPSKISVTHGVVGDVDLQNCGDKSMITFSKTTVKAFVLESGVQLFQHPMESISFASLGEGQYENLVAYVAKDSRLERGCFIFECAPGLANDLILTIGQAFELKYKDFLNKNP-VIQPVVARFGDPSSALNAQVQNRYEDTTPKEHTYSNHHDFEGATAPEMDYDHLANNNKRLETQEEQYNTLSMNXNGLISPKHGPSIAPGATFMGPDQSVAT------------VFDNP----ISKMNAKKTAMNGHTSFDMEDGKRKANKPENIKIDNSSTADESMNTRHETMYLVPSPSQKIKQKEXXXXXXXXXXXXXXXXXXXXXXXXXXNMKQRLKISEKLQIQSWFHGVLSRDSAEGMIHIDGEFLVRESGGSKGQYVLTGMRNGTHRHLLLVDPEGKVRTRDHSFDTVVGLIAYHMTHNIPICSGSSEVYLIHEI 1646
G +W GSFV KP +GWLH + + GV+Y +Y+G V++++SMR + F R V REAIS C + KP ++ ++G +L+ G +T S +++ + + H M+SISFAS G+ VAYVAKD +R C I EC GLA D+I TIGQAFEL++K +L P ++ P G SA + + + +H Y N DF G P + + R + N +P H + P +G D V +FD+P + ++ + A+ G P N I+ S+ D E VP P Q + E +L+ + WFHG LSR AE ++ ++G+FLVRES + GQYVLTG+++G +HLLLVDPEG VRT+DH F++V LI+YHM +++PI S SE+ L +
Sbjct: 131 GEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSS-ILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEP------PDHQYYN--DFPGKEPP---LGGVVDMRLREGAAPGAARPTAPNAQ---TPSHLGATLPVGQPVGGDPEVRKQMPPPPPCPGRELFDDPSYVNVQNLDKARQAVGG-------------AGPPNPAINGSAPRDLFDMKPFEDALRVPPPPQSVSMAE------------------------------------QLRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPV 579 The following BLAST results are available for this feature:
BLAST of TCONS_00046665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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