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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046670 ID=TCONS_00046670|Name=TCONS_00046670|organism=Clytia hemisphaerica|type=transcript|length=458bp
GGGAAGAATTTGAAGacttttgtgtaaaaaatctcATTTCTTGAAGAAAG
TGGATCATCTAAAACCCCTAACAGAAATATTGGACCATGGAGGATTTGGT
AGATTGTCTTCAATTGAATTGCAACCCAAAGGAAATGCCGTTGATGAAAC
AACACCGACACACCACCAATCATCATGACATGatttgcgtgatcgtgatt
gaagacaaagaATTACgcgatatcgtgatcagagttaccgctggtGGGAG
GGCTCGTTGAGAGTGGCGTTGGTATGAAAGATTCCAGTTACAATACAACT
GTACATTTTTTACGTATGATTGTAGTTTTTTATATGTTGAAGATATTTGT
TAGGACTTTTTCTCTGATGAGTCATAATCATTATTACATGATGTAAATCT
ATTTTGCAATGTGAAAACATTTACTTAACCTGactctcaaaataatttga
ttataaac Run BLAST on NCBI transcript from alignment at scaffold_116:696029..700357+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046670 ID=TCONS_00046670|Name=TCONS_00046670|organism=Clytia hemisphaerica|type=transcript|length=4329bp|location=Sequence derived from alignment at scaffold_116:696029..700357+ (Clytia hemisphaerica)
GGGAAGAATTTGAAGacttttgtgtaaaaaatctcATTTCTTGAAGAAAG
TGGATCATCTAAAACCCCTAACAGAAATATTGGACCATGGAGGATTTGGT
AGATTGTCTTCAATTGAATTGCAACCCAAAGGAAATGCCGTTGATGAAAC
AACACCGACACACCACCAATCATCATGACATGGTATGTTTTCATTCGTAT
TTTTTCATtgtcatttcattttcattcccTTTTGCACTTTTAAGTCAGGT
TGCATTTTGTAGGcataaatttcaattcaaattctaaaaagaaaaatctg
aTTAACCtgatttttaaccttttttagcCTAACTTTCCAAGCCGATTCCT
TTTCGAATTGCTAAGTAAAAAGATTTGTGtcaagttttttgcttaaatca
tTGGACATACAATGTTAGATCCCTTCTAATGCTCAAGAGTATGATCGATT
ATAGCAGTGTTAAAATGACTATTAGAATCTGTAGCATCTTTCGTGGGTCT
CAACTACATGgtgattggttcgaaagtagataggatttttgaaaaatgaa
aagttgtCAATTTTTCACTCATGTTCAGTCATGTTTTGGGGTTAAGAGTT
TTGCCTACGACGTCggttttttggccaaaaaaactTTTGCCATGCCTAAT
CCGCGAGCCCTCtctcaaaaaagtcttaaaattctATCTACTTTTGAACC
AAGAACCAATCACATGTGGTTGAGTCCCACAAAAGCTACGGATCCTATAA
GGGATGTCCTTCTACTATATAGAAGATTTAGAACTTCAAACAACGATCGA
ACCGATAATCTGATCTTCATATGATTTAACTATAAAAATACGATATAATT
TTCCATCACTGATCACTTATCATCCTGTATCATCTCTATTTTAAAACAGC
CTCCTTTTAAAGcgacacgttttttataagaacatccaaaattcattcat
tcctaaaaatgttcttaacatgttcttattttgactattttgtgagtatt
tttgaccattttcccaagaaatagggtgtttctgagtccacaaagccaag
atgttcttaacttgttcttaaattttcgacCAACCAAGCCttacatgttc
ttataaagtttgttctcaTATAAAAAAACTGTATTTCTATCTTTAAAACA
ACTTCCTTTTGAGCTATTAGCATTTCCATTATAAAATGGAACATAGCGAG
ATATTGATCTATTAcagtattataaaaaaatgctttttaatttttttacc
actATTCTGGTGAGATATGATTTATGTATGGTACTTTATAAGAAAGATTG
GAAAGGTTTTATGAGTGATGTTGATAAGGTTAAGGAAAGAAAATGTCTat
gtttatattttattatcatttGGTACTTAAAAGTAACgttaattttcttt
ataagaatgttctaACCATTTCTGAGATTTGTACTTGTTATGATATTTAT
CACTAAATAGAAGGATTCTTATTCTAGTGTAAAAATTAAACCTTTCTCAC
TGTTATTATGCATATAACTCAGTCTTTATCACATTTTCCACTTATTTCAT
TTGAGAGTAGTTTGCAGACGTTTTTTTTCTGATACTGATgggtttttttt
gcttgaaagtttgaagggctacatacactacacaatatattgccaggcaa
tatattggcaatttgttgatgatatattgctgagtgcAGATAATATATTG
ctaaggtgtccgcaatatattgtcagctcgatttgcaatattcagACAAT
ATTAAGggatttttaaagaaagaaaattcctttttataatagagtacctg
ATGTTTACTTCGTACGTTACGGTCCGAAAACTATATTGTTGAATATTGTT
CGttaatatattgtgtagtctcaGTAGCCcttaaaggtttcatttttaca
tcagtgtcttgctattgttatattatgatGATATaaccaaaaatttgttt
ttcttttcctctttctgaccaatcttgctccgcatccgtgtcaatccaat
gttaaaaagcttgtgaattaaaaatgatgagtaagcaaacgatatcactc
ttatttaaaaacaaaacctttaaactttAGAGATGGAAGGTATTCTTGAT
AACATCGTTTTGCTTATGGTTTCCTCTGTTCGTCTGCATTGTAGATATCA
AATTATTCACTGTCACATAATTGTTCAGTTATTTAAATGATTTATCAATT
AAATAAAGTACTTTTCTAACTTGTCAACTTTATTGATTGATTACTTACTC
TGCTTTTAAAATTGATACTGATGTGGAGCAAGACAAATGAAAgtgttttt
gtttattcagcaaaAATAATAATGTTGTGTTATCTGTTATGAAAAGATGC
ATATTTGATAGTTTCCTCATGGATACCTATTTTGAAATACAGTAGTCAGT
GAAATTACTAAATGTCAAATTTGAATGATTAGGCAAAAAAATCGAACTAT
TTTAAACACGAGAGTGTCGCGTTTTCATATCCGAACTTAAATGAAAAGGG
GTTTTTGAATCGTATAAGGTTGGCTAATAGATACTAAATAAGAATTGAAA
TACAAAGAATTacctttttaaaacttttaagatCTTCACTGGCAACAATG
GCAACAATGAGTACATTGTTTTACCTCAGTTACGGTAACACAGCAAAATT
TAATAAGATATTTGACTCTAGACCAAAGATTGATGAATaatattttatca
tttattACATAATGTCTATCCCTCTGTTTAAAATATTCCTTTCTCAAATA
TTAGTTCAAGAGATTTAAAATGTACTGTGGTTAGAGATTTTCACTGTTTA
ATAAATTGCATTTGAATTCGTTTTATGTTGGTATGTGGTATTggttttag
aatatttttgacATGAATTTTTTGCTCTCGCAGTTCATTGTATTGCATGT
AGAACTGAGCGAGAAAACATATAAAATgcagggccggcgaatcaattttg
aaagtggaggggccaaatagtaagtgtctaaggaggcgccaccatggttg
gttgattttttttttcttagcaaaaaagtgggggggccaaatagtaagtg
gctaaggaggcgccaccagggttggttgattttttttttcttagcaaaaa
agtgggggggccaaatagtaagtggctaaggaggcgccaccagggttggt
tgattttttttttcttagcaaaaaagtgggggggccaaatagtaagtggc
taaggaggcgccaccatggttggttttttttttttttaacgaaaaaaggg
ggggggcccccccccccccccttgccccccccccagtttCGCCGGCCCTG
AAATGTTGTATGTCATGTCATCCTGCTCTATAATATATTTGCACCGTAAT
TTCTCATGAGTATTCTTTATATTAGACCGTCTAATTAGCTGTCTTTCCAT
TGATTTATGTATGATGGTtgtctcttttctttttcttaaaattgtaCAAT
TTTATTCTAGTTTTTGATtgctttctttcaaaatatttctccgTTAAGCG
AATTCGTTTTGTAATAACCAAAGGCTTGTTGTATTTCTAACCTCGAGAAA
GTTGGACCTCCTACAATCTGTGACTAAATATTGTGGCAAGAATTCTCTTC
CCCCTTAGTATCAATGTTGATGGGTAGAGTGGCTGCCACCATGCTCAGAA
AAAGCTCACATCAACACTGATATTAGGGAGAAGCAATTTTTCCAGAAATT
TCCACATATTTTTTCGCTGATTGTAGAAGTCGTTCATCGTCAAGCTTGGG
GAGATGTGGgtgtttcacattttgttttTCATACACCCTAATTTTAAAAG
AGAAATAGAGATTGTAGTTCAAAGTTCAGCAATCGTGAAAAGTATtgtgt
tatttttgtatttgcTTTTTCTGGATATTGGTATCTTACCGTTGAGATAG
GGACTTTTTTGTAACGTGATTACATGGTTTGGAAGTTTTTGCGTGATTGC
ATGATGAGATGTCAAAACGTGattgtgatttgaaaaattttttagcCGTG
ATACGTGAgctggactttttcaaagggatgcgtgattgtccatttttttg
cagatttgcgtgatcgtgattgaagacaaagaATTACgcgatatcgtgat
cagagttaccgctggtGGGAGGGCTCGTTGAGAGTGGCGTTGGTATGAAA
GATTCCAGTTACAATACAACTGTACATTTTTTACGTATGATTGTAGTTTT
TTATATGTTGAAGATATTTGTTAGGACTTTTTCTCTGATGAGTCATAATC
ATTATTACATGATGTAAATCTATTTTGCAATGTGAAAACATTTACTTAAC
CTGactctcaaaataatttgattataaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046670-exon-scaffold_116-1491911889:696029..696210 | TCONS_00046670-exon-scaffold_116-1491911889:696029..696210 | Clytia hemisphaerica | exon |
| TCONS_00046670-exon-scaffold_116-1510915933:696029..696210 | TCONS_00046670-exon-scaffold_116-1510915933:696029..696210 | Clytia hemisphaerica | exon |
| TCONS_00046670-exon-scaffold_116-1575043694:696029..696210 | TCONS_00046670-exon-scaffold_116-1575043694:696029..696210 | Clytia hemisphaerica | exon |
| TCONS_00046670-exon-scaffold_116-1491911889:700082..700357 | TCONS_00046670-exon-scaffold_116-1491911889:700082..700357 | Clytia hemisphaerica | exon |
| TCONS_00046670-exon-scaffold_116-1510915933:700082..700357 | TCONS_00046670-exon-scaffold_116-1510915933:700082..700357 | Clytia hemisphaerica | exon |
| TCONS_00046670-exon-scaffold_116-1575043694:700082..700357 | TCONS_00046670-exon-scaffold_116-1575043694:700082..700357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:696029..700357 + |
Blast
The following BLAST results are available for this feature:
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