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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046675 ID=TCONS_00046675|Name=TCONS_00046675|organism=Clytia hemisphaerica|type=transcript|length=3291bpRun BLAST on NCBI protein sequence of TCONS_00046675-protein >TCONS_00046675-protein ID=TCONS_00046675-protein|Name=TCONS_00046675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=834bp MDAREIVLPPNTQSSAAGNAHRPWPAKHHPGPHEGQVPTPPGSLPATSKPRun BLAST on NCBI transcript from alignment at scaffold_116:756805..772084+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046675 ID=TCONS_00046675|Name=TCONS_00046675|organism=Clytia hemisphaerica|type=transcript|length=15280bp|location=Sequence derived from alignment at scaffold_116:756805..772084+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:756805..772084+ >TCONS_00046675 ID=TCONS_00046675|Name=TCONS_00046675|organism=Clytia hemisphaerica|type=CDS|length=22545bp|location=Sequence derived from alignment at scaffold_116:756805..772084+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046675 vs. Swiss-Prot (Human)
Match: PRDM6 (Putative histone-lysine N-methyltransferase PRDM6 OS=Homo sapiens GN=PRDM6 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.523e-39 Identity = 85/230 (36.96%), Postives = 124/230 (53.91%), Query Frame = 2
Query: 464 KFTAKDIERYLYGRQEMKIVNIEETKEKQIACGPKENGVKSEDKNKPAKWCDLCQEIRFGECPEHGPLTAQRDSINLQGPKSYA--------ISTFPDEVGLCVSTIPMSGYGVFARLFIPLGTWIGPYEGKKISVDDGMKMVGKGEGNFLWEIH-ENGRLSAFLDASDEKTSSWMRFIQCARHKGEQNLFVFQYYGSIYYRAFKDITVGEELLAWYDDKYPQYCGIPYE 1126
+ +A++++ YLYG+Q M+I+ + ++ + P CD+C + R GECP HGPL + R + + A + P EV LC ST+P YG+ A I GTWIGP++G + + ++ LWEI+ ++G L F+D + SSWMR+I+CARH GEQNL V QY +I+YRA DI G ELL WY+D Y + GIP +
Sbjct: 167 RCSAEELDYYLYGQQRMEIIPL------------------NQHTSDPNNRCDMCADNRNGECPMHGPLHSLRRLVGTSSAAAAAPPPELPEWLRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLP-PEKVQAGAVRNTQHLWEIYDQDGTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQYRSNIFYRACIDIPRGTELLVWYNDSYTSFFGIPLQ 377 The following BLAST results are available for this feature:
BLAST of TCONS_00046675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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