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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046710 ID=TCONS_00046710|Name=TCONS_00046710|organism=Clytia hemisphaerica|type=transcript|length=1142bp
tacagacctgttttttttttaataatgatAACGTGATCAATTCTTTTACT
CCTTTTAAACCTCTTTAAAGTAAATATTATTGAAATCTTGataattttaa
tttgaaataatagCTACTTTAGGGCTAATATATTTCTTCAAATGAAAACT
GCTCTTTTATTTCGTGTGCTTTGTGTTGTTGTCaggatttttcttttcca
gcttTGGAGATTTGAAACATGTCAATAACTATCAAAGGAAAGATTAGATT
CGCTTCCCCTCCTTTAACCATCCCAGATGGATCTTTGCTAAAAGTTAAGT
TTCAAGATACAGGTCGCATGGATGCTCCATCAATCGATTTGGGAGTTTAT
GAGAAAGTCATTGAGAGTTATAAAACTGGGGATGAAATCACTTATGAAAT
CAAATGTAATCGACCAAACTGCTTCGGTACTTCAatgaGTGCTGTTTTAA
ACATTGGCTGGAAGGCTTCTGGTAGTGAATGGATAAGAAAAGGGGATCAC
TTGAATGACACGCACCATGACATCGATGTTGGAAATGCTAGTCAGGTTGT
TTTTGAGAAAGATATTGAAATCATCCATTACAAATGAATGTGCTCATAAA
TAAATTCAGATTGTCAATTAAGGCAATAGCACGCAATATACTTTCAATGG
GGGATACAGAAATTCAAAACTAGGAACTGTATTTtgtttgctagtaaact
ggaaAAAATTATGAAGAATTAGAgacatttttttgttatttaagTAAGAG
AAATAATATTCACAATTACAGCATTTTCAAAGTGCTCTGGGGTTGCATAC
AGTACGTCATAATTGTTTTAGCTTAAGCTTTATGACTTTAAATCATACag
tttattttgaaatgatttgaaagcagtataattattactttttattatAT
ACAGTATATCTAAAACGTGCTATATCAATTAACACAAAGGCGGATGAGAT
TGAAAGTGGTACAAACTTACAGATTTATGCTTTTTTTTagattcgatatt
tttttcacTGTCATGTGTTATTGGAAACCCATGCTTACTAAATCTAAATG
GAATAAGATTGATAAAAAAGTCCAAATGAATTGGACTAAAATAGTTTCTT
CTACAGAGATTTTTTAAAGTGTTTTCAAGATTCAGTTTATTG Run BLAST on NCBI transcript from alignment at scaffold_116:490715..495380- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046710 ID=TCONS_00046710|Name=TCONS_00046710|organism=Clytia hemisphaerica|type=transcript|length=4666bp|location=Sequence derived from alignment at scaffold_116:490715..495380- (Clytia hemisphaerica)
TACAGACCTGTTTTTTTTTTAATAATGATAACGTGATCAATTCTTTTACT
CCTTTTAAACCTCTTTAAAGTAAATATTATTGAAATCTTGATAATTTTAA
TTTGAAATAATAGCTACTTTAGGGCTAATATATTTCTTCAAATGAAAACT
GCTCTTTTATTTCGTGGTAAGTTAATTACTACACTACACTTTGTTTACAT
CGAATAAATCAAAATGGTATCTTAAAAGTGGGGTGTGTTTATTTTGATTT
CTTTCACTTTCTTTTTCCAGTGCTTTGTGTTGTTGTCAGGATTTTTCTTT
TCCAGCTTTGGAGATTTGAAACATGTCAATAACTATCAAAGGAAAGATTA
GATTCGCTTCCCCTCCTTTAACCATCCCAGATGGATCTTTGCTAAAAGTT
AAGTTTCAAGATACAGGTCGCATGGATGCTCCATCAATCGATTTGGGAGT
TTATGAGAAAGTCATTGAGAGTTATAAAACTGGGGATGAAATCACTTATG
AAATCAAATGTAATCGACCAAACTGCTTCGGTACTTCAGTAAGTCCGCCA
CTTTTACTTTCTTTATGTCATATTTTCATAAAACTAATATAATACTAAAA
GTAAAAAAAAAAAAATTTAAAACAACCCGAAACACAGTTAGGAACATTTG
GCAAGTTCCTGTACGCGGTNCCAGATTTATTCAGATAAAGCTATAAGAGG
TTCATTACTTGTGGGTTTTAAAACCTACATGAGCAAAAACGAAAGTTGTT
GGGAAGGAAAGAGTAAACGCAATACAGAAGGTTTGGTTGTGTTGATCAGG
TATGTTTTTATTCTATCCGAACTAATGTTAAAAAAGACCAAAGAGGTCCT
GACTGACGGTGGAGTGCATGACGTAACTCGCGCGGCAACAAACTCGCCTT
CTGTTGGCTGGTCATATTGGGCGTTTTGGCGTTACCACCCTCGAAGCAGT
GGGCGCATTCGTCATTCCGCAACTCTGTCCACCATTTTAAATGAGTTAAC
AATAGATCCAAAAGGGCGCCCTCATCAAGAAAGATTATTTGCTATGGTCT
CCGGCTTTGGAAAGCAGTAATGTTTTCGATTGTTTTCGATGGAAAATGGT
AAGAAACTTAAGTTTACAAGTGTCATTCAGNNNACCAAAAACATTGCTAC
TTCCCAAAGCCGGAGACCAAAACAAATTATCTTCCAAGATTATGGCGCCC
TTTTGGATCTATTGTTAAGGCCATATAAAATGGTGGAAAGAGTTGCGGAA
AGACAAAGGCGCTCGCTGCGTCGAGGGTGGTAACGCCAAAACGCCCAATA
TGATCTACCAACAGAAGGCGAGGTAGTTGCCGCGCGAGTTACGTCACGCA
CTCCACCGCAGCGCATAACGAAGTGTGTATAAATGAATATCATTAATTAT
AAGAATATCTCATGTGCTTACTTTCAGTAAACTTCGAGTGCTTCATTAAA
GATGAAGAAAGTAAGAAGATAAAAAATGCGCTGGATAATTTTCATTGTAA
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTGAAAGTTTGAAAAAGTTTTTCCGACGCAAAAGAAATTGTCAGCCAATT
AAAAGCACAGTGTGCTTATACTTACTATGTTTGCTACATTGTCTAGGCTA
AAAACAGTGCGAAAAGACACGAACGCCATTTTTTATTGAGTGACGTTATG
ATTTTTTTGATTGCGGCCGCGTACAGGAACTCGCCAAATGTTCCTAACTG
AGTTTTTGCTGGCTGATAGAATGGCAGGATCCTGGATGGTTTCCCTAACT
GAAACAACTCAACACTTGTTTTGATCTAGTAATATTGGTTTAATGTTGAC
ATCTCTCATCTTATTCCGACACCATTCTTTAAACTTTGGAATAAAAGCAC
ACCACTATGCAAACGTCATAATTATTACTTTTAACATTTGACCAAAATTC
AATCCCACAACTCCTCATCTTGATTTGCATCGTAAGTTGGTCTAATGACT
AATGTCGACATCCCTTTTCTAATTTCAACACCCTTCTTTAGAGATGTATA
AGAATAATACGAAGGTCGGAATCACTGATTGAAACTAATCTTTGTTGCTT
AGCGATCAGAGTGGAGTAAATCCTTTGTCTATCAGTGATTTTGACCTACC
TATTATCCACATTTCTCTAGACAGCTCAAGACAGTCTTAACTCACCACGG
AAAAAAATGTTGTACATTATATGTAGGTTTTTAATCGGCGCGCATTATAA
TGTAGTACATTAAAAATTGTTCAAAGACCTTTCTACACTCAAATAAATAA
AAGAAAGACTCTTCTACACTTTACAGATTTAACCATTTCCCTTTTAAGTT
GGTGCTCATCCATTCCAGATCATCTAAATAATGACGCAATGTTTCGAGCT
CCACCCCTGACCCTAACTAATAATATTGAAATAATCAAAAATCGAAGATA
TCGAAAAGGTCAAAAAGGAAGAATAAAAAAAGTCTACTTTTGGCCGTCCA
CAACCCCGACCTAAAAGTGACTGAACTACCCCCATAGAAAAACAATGATA
AAACCATGCATAATTATTACAATATGCATGATACAGTATGCATGATATGC
AAGTTTTATTATTTTTGTATTGTCAACAAAGTGTAATTGACTTGCAAAAG
CAATTAATGCAAAGGATGAGATGATGGGATTGAAACTCAGACAAACAGTA
ATTTTGATGTCTATTTTTAGAATCACTGCGATACCGTGAGATCGGGTAAC
TTGCATCAGTGGAGGCTAATATGCATAGCCCTCAAATGAATGACCTGTCT
GGTCATTAAAATACAACTACACAGCTCCGCTCACAGCTCTAATCTACCAT
TTTTGTTTTGATTTAACTTTGTATTTTAATGACCAGCAACGTCTTTCATT
TGAGGGCTATGCATGTTAGCCTCCACCGATGCAAGTTACCCGATCTCACG
GTATGCTATTGAAAGGTCAGAATCCCTGTGCCTGTCCGCTAATAAACGAA
CAGAGAGGTCTTTTTTTCAATCAGTGATTCTGACCTTCCTTTAATTTCTA
TAAGCTAAGGCAGGGTTCACTCACATATCAATGTTTCCCATGACTAACGT
CAAATTGACGTGGGAGGGCGGAGGGGTCTGACGTTAGTTGAGGAATGTTG
ACATCAACTTACTGTAATTTCCATCCAGACTTTTTCAATCAATAAAACTG
TCTGGTGTTTTTGTGTAGTGCCAAAAAGTGTAGTCCTTTAGGAGAATGCA
ACAGTCTATTGAATAACAAATTACACCAGTATACATTATTTTCCCTAAGC
CAATATAAACGGGTGATAGATTATCTTATTGTCCCTGTAGATAACAGCTG
TCAGGCTGTGTTGTAATAGACAAATCAATTATATAATCTTATCATTAAAA
CAAAATAAATTTTGGAGTAATCACAAATTAGTTATTCAAAAGATTGCATT
CTCTCAAACGACTATTATTTGATTATATGATTCTGGATACTGGACTAGAC
ACTTTTCCGGTGGGAAAAAGTTTTAACATCAGACATACCTACGTACTATT
GCATACTAATTATGTATGGTGTTTGGATTGTCAAGTGACAAAATGTTTTC
TCATTTAACACTAAGCAGTGTCAGCAGGGTTGTAACTCAATCTTTAACCA
TTATTACAATTATTAGTAATTTTTACTTAAAATCTTTTAAAATCTTTTTC
TATTTTAGATGAGTGCTGTTTTAAACATTGGCTGGAAGGCTTCTGGTAGT
GAATGGATAAGAAAAGGGGATCACTTGAATGACACGCACCATGACATCGA
TGTTGGAAATGCTAGTCAGGTTGTTTTTGAGAAAGATATTGAAATCATCC
ATTACAAATGAATGTGCTCATAAATAAATTCAGATTGTCAATTAAGGCAA
TAGCACGCAATATACTTTCAATGGGGGATACAGAAATTCAAAACTAGGAA
CTGTATTTTGTTTGCTAGTAAACTGGAAAAAATTATGAAGAATTAGAGAC
ATTTTTTTGTTATTTAAGTAAGAGAAATAATATTCACAATTACAGCATTT
TCAAAGTGCTCTGGGGTTGCATACAGTACGTCATAATTGTTTTAGCTTAA
GCTTTATGACTTTAAATCATACAGTTTATTTTGAAATGATTTGAAAGCAG
TATAATTATTACTTTTTATTATATACAGTATATCTAAAACGTGCTATATC
AATTAACACAAAGGCGGATGAGATTGAAAGTGGTACAAACTTACAGATTT
ATGCTTTTTTTTAGATTCGATATTTTTTTCACTGTCATGTGTTATTGGAA
ACCCATGCTTACTAAATCTAAATGGAATAAGATTGATAAAAAAGTCCAAA
TGAATTGGACTAAAATAGTTTCTTCTACAGAGATTTTTTAAAGTGTTTTC
AAGATTCAGTTTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046710-exon-scaffold_116-1575043694:495215..495380 | TCONS_00046710-exon-scaffold_116-1575043694:495215..495380 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1575043694:494843..495110 | TCONS_00046710-exon-scaffold_116-1575043694:494843..495110 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1575043694:490715..491422 | TCONS_00046710-exon-scaffold_116-1575043694:490715..491422 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1510915933:495215..495380 | TCONS_00046710-exon-scaffold_116-1510915933:495215..495380 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1510915933:494843..495110 | TCONS_00046710-exon-scaffold_116-1510915933:494843..495110 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1510915933:490715..491422 | TCONS_00046710-exon-scaffold_116-1510915933:490715..491422 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1491911889:495215..495380 | TCONS_00046710-exon-scaffold_116-1491911889:495215..495380 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1491911889:494843..495110 | TCONS_00046710-exon-scaffold_116-1491911889:494843..495110 | Clytia hemisphaerica | exon |
| TCONS_00046710-exon-scaffold_116-1491911889:490715..491422 | TCONS_00046710-exon-scaffold_116-1491911889:490715..491422 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:490715..495380 - |
Blast
The following BLAST results are available for this feature:
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