TCONS_00046838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046838
Unique NameTCONS_00046838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046838 ID=TCONS_00046838|Name=TCONS_00046838|organism=Clytia hemisphaerica|type=transcript|length=645bp
AGAATAAAGTGAACCCGGGGCTATCCAACTGTGAACGCAATACAAAGGAA
TGCTTTAAACTACAAGCTAAATACAAATTCTTTCTCGCTGTTGAGAACTT
CTATTGTACGGATTATGTTACGgagaaattttatgaagaatCGCTTCGGA
AAGGATTGGTTCCTGTAATGATAAATGGCGGGAAATTGAGAAATAGACGT
ATTGCTCCACCACACAGTTATATAAATGTTTTGGATTTTAAAAACGCGAA
AGAGCTCGCTGATTACATAAATTATTTGGATCGAAACCAGACAGCTTATC
TAGAATATCATAAATGGAGGAGAGACTATGAAATCGTACCGCATAATTAT
AAATGTAATTTATGCAGGAGTATCAATAAGAAATTCAACAGAGTGAAACG
TTGGCGCGCTAAAAATTTGGGTGATTTCTGGAGCCCAAAAATGTGTAAAA
GGTACGAAAACAAAGCATTTCAAAAGTATTTGATTTAAGGATGATACACA
CTTTCAAATATTACGAGCAAGTTTTGAATCGAGTATAATCCTGTAAATGT
AGGTAGACTGGTTTCATAGCAAAATCTTGATCTTTTAATGGGTCACAGGT
GATAACCTAGTACTCTAATCACCCCATTATCGGCTACGACGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00046838-protein

>TCONS_00046838-protein ID=TCONS_00046838-protein|Name=TCONS_00046838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
NKVNPGLSNCERNTKECFKLQAKYKFFLAVENFYCTDYVTEKFYEESLRK
GLVPVMINGGKLRNRRIAPPHSYINVLDFKNAKELADYINYLDRNQTAYL
EYHKWRRDYEIVPHNYKCNLCRSINKKFNRVKRWRAKNLGDFWSPKMCKR
YENKAFQKYLI
Run BLAST on NCBI

transcript from alignment at scaffold_117:150666..151310

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046838 ID=TCONS_00046838|Name=TCONS_00046838|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at scaffold_117:150666..151310 (Clytia hemisphaerica)
ATTTCGTCGTAGCCGATAATGGGGTGATTAGAGTACTAGGTTATCACCTG
TGACCCATTAAAAGATCAAGATTTTGCTATGAAACCAGTCTACCTACATT
TACAGGATTATACTCGATTCAAAACTTGCTCGTAATATTTGAAAGTGTGT
ATCATCCTTAAATCAAATACTTTTGAAATGCTTTGTTTTCGTACCTTTTA
CACATTTTTGGGCTCCAGAAATCACCCAAATTTTTAGCGCGCCAACGTTT
CACTCTGTTGAATTTCTTATTGATACTCCTGCATAAATTACATTTATAAT
TATGCGGTACGATTTCATAGTCTCTCCTCCATTTATGATATTCTAGATAA
GCTGTCTGGTTTCGATCCAAATAATTTATGTAATCAGCGAGCTCTTTCGC
GTTTTTAAAATCCAAAACATTTATATAACTGTGTGGTGGAGCAATACGTC
TATTTCTCAATTTCCCGCCATTTATCATTACAGGAACCAATCCTTTCCGA
AGCGattcttcataaaatttctcCGTAACATAATCCGTACAATAGAAGTT
CTCAACAGCGAGAAAGAATTTGTATTTAGCTTGTAGTTTAAAGCATTCCT
TTGTATTGCGTTCACAGTTGGATAGCCCCGGGTTCACTTTATTCT

Coding sequence (CDS) from alignment at scaffold_117:150666..151310

>TCONS_00046838 ID=TCONS_00046838|Name=TCONS_00046838|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_117:150666..151310 (Clytia hemisphaerica)
TTAAATCAAATACTTTTGAAATGCTTTGTTTTCGTACCTTTTACACATTT
TTGGGCTCCAGAAATCACCCAAATTTTTAGCGCGCCAACGTTTCACTCTG
TTGAATTTCTTATTGATACTCCTGCATAAATTACATTTATAATTATGCGG
TACGATTTCATAGTCTCTCCTCCATTTATGATATTCTAGATAAGCTGTCT
GGTTTCGATCCAAATAATTTATGTAATCAGCGAGCTCTTTCGCGTTTTTA
AAATCCAAAACATTTATATAACTGTGTGGTGGAGCAATACGTCTATTTCT
CAATTTCCCGCCATTTATCATTACAGGAACCAATCCTTTCCGAAGCGatt
cttcataaaatttctcCGTAACATAATCCGTACAATAGAAGTTCTCAACA
GCGAGAAAGAATTTGTATTTAGCTTGTAGTTTAAAGCATTCCTTTGTATT
GCGTTCACAGTTGGATAGCCCCGGGTTCACTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029882XLOC_029882Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046838-proteinTCONS_00046838-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046838-exon-scaffold_117-1491911889:150666..151310TCONS_00046838-exon-scaffold_117-1491911889:150666..151310Clytia hemisphaericaexon
TCONS_00046838-exon-scaffold_117-1510915933:150666..151310TCONS_00046838-exon-scaffold_117-1510915933:150666..151310Clytia hemisphaericaexon
TCONS_00046838-exon-scaffold_117-1575043694:150666..151310TCONS_00046838-exon-scaffold_117-1575043694:150666..151310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:150666..151310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.184265	0	0	0	0	0	0.0685698	0	0.164879	0	2.32704	2.13565	1.15513	1.53714	0	0.18783	0.432496	0.271545	0.157348	0.230247	0.0932983	0.254465	0.78628	0.857677	0.334727	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001503Glyco_trans_10
Vocabulary: Molecular Function
TermDefinition
GO:0008417fucosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008417 fucosyltransferase activity
Blast
[Close]
BLAST of TCONS_00046838 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.319e-19
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 3 
Query:   66 AKYKFFLAVENFYCTDYVTEKFYEESLRKGLVPVMINGGKLRNRRIAPPHSYINVLDFKNAKELADYINYLDRNQTAYLEYHKWRRDYEIVPHNY----KCNLCRSINKKFNRVK 398
            A+YKF+LA EN    DY+TEK +  +L  G VPV++   +    R  P  ++I+V DF +A  LA Y+ +LDRN   Y  Y  WRR Y +   ++     C +C+++ +  +R K
Sbjct:  405 ARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVLGPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEPWCRVCQAVQRAGDRPK 519
The following BLAST results are available for this feature:
BLAST of TCONS_00046838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUT44.319e-1936.52Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens G... [more]
back to top