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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046856 ID=TCONS_00046856|Name=TCONS_00046856|organism=Clytia hemisphaerica|type=transcript|length=1702bp
GAAATCAGTTCAGACAAGTATAGAACCACTCAATGACGGCTGTAGGAAAC
GGCATAAATAAAGGACATAAAGATCCACCAACAAATCACTAGTCACTTAA
AGAGGTTACAGTAAGAGTTCAAGGCTTGAAGCATCTACGCCGCGCAgctg
aagaaaaatatttcaagaacacAGCAAAGGAAAACAttagaaaagaagaa
gaaacacGATTTGTATTTGTGTGTACTGCATACACTTAAATTGAAGAAGT
TGCAGTtccaaaattaaagaaaaaattgaaaaggcaCCTACTAAAGATAT
CACATTCCTGGCAGCAAAATACGACAAAGCCGAGCGGAGAAATCTAAAAC
AGAGAGCATTGATATAGGTCACTATCGATATTAAAATTAATCGCATGCCG
CCGAGTTGGATTGCATTTGAACATAAACAGTATCATATTTATTTTCCGTT
TCTAAACAAAGGGGATTAACCACACCATACAAACAAGAAAGAAATCGCGT
CCGGATATTTTTTAAGAGTAGTATAAATACCATTGCCGTCTATTggagaa
aaacattttacaGCGCGACTTTTGTCAAAAGCATTTCTATACATTAGTAT
AGAAGAAGCATTTTTGTACATTAACAGCGACCGTACAGAGGCAGCAGCGA
CCAGACGACAAAATCGAACGAAGATTTTGAGGAGATCTGTGATTTTATAG
CGATATAATGAGGAAAACACCGAAGTTAGCTCGAAGCCCAAAAGGCGAAG
TTACTCCATATTACGATGTAGCCGTTTTAGGAGAAACAGCTTGTGGTAAA
TCAAGTATCATCGAACGATTAGTTAATGGATCATTCACACAAACTTATNA
AATTTCCAAAATTGATCTAAAACGGAAGATACATCTTTCCTTTAAGTTTA
GATTGTGTTGAATATTTTGTTATCGATTCTTGCTAGAAGATTTTGCGacc
ttaaaagattttttttcaaaatgtaaatCAAGCTTAAGTAGATATTACCG
ATCGAAAAATACTCTTGAAACATGAATGGGCTCGTGTAACTTGACACTAA
ACATAGACAATCGTCATCAAATTGGCGCGTGTTCAGGAAAACACAATAGT
ATTAAGGAATGTCGATTTTTAAGTACCTCTCCAAAGGTATCAGGGTTTTC
TGTTCttacaaaaatagaaataaaccTCTCACCCTGGGTTTCTATTGNTA
CAGCAGGTGGATTTGAATTTCCAATGATGCTTCGATTAACCATCACAAAA
TGCCAagcttttgttgttgtttattcAGTCGGATCATCAAAATCATTGGA
AGTAGCAAAGAAACTTATCGCAGAAGTTAGCGAACAAAAAGGACAAAATT
TCCCTTGTGTTTTAGTTGGGAACAAAAAAGACTTGGAATTAACGGGAGAG
CGCGAAGTAAGTTTTGAGAAAGGACTTCAAACGGCGGTACAACATGGTTG
CTCTTATATTGAAGTCTCAGCGAAGGACGATGAAAATATTACAGANAAta
aattttgtaatattttcattttcctgtATATATGTAAATTATGCGATAAA
AGTATTTTAACTTGttatttttaacatttcttGGGGAAAGATTTTTTACT
TTCACATCAACAAAACTACACATATTTTATTGAATTATTCCATTCCCTAG
ACAAAAATTGATCTTAACCGCAACTAATTGATGGATTAATGAGATGAAAT
AC Run BLAST on NCBI protein sequence of TCONS_00046856-protein >TCONS_00046856-protein ID=TCONS_00046856-protein|Name=TCONS_00046856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MGSCNLTLNIDNRHQIGACSGKHNSIKECRFLSTSPKVSGFSVLTKIEIN
LSPWVSIXTAGGFEFPMMLRLTITKCQAFVVVYSVGSSKSLEVAKKLIAE
VSEQKGQNFPCVLVGNKKDLELTGEREVSFEKGLQTAVQHGCSYIEVSAK
DDENITXNKFCNIFIFLYICKLCDKSILTCYF Run BLAST on NCBI transcript from alignment at scaffold_117:344123..345824 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046856 ID=TCONS_00046856|Name=TCONS_00046856|organism=Clytia hemisphaerica|type=transcript|length=1702bp|location=Sequence derived from alignment at scaffold_117:344123..345824 (Clytia hemisphaerica)
GTATTTCATCTCATTAATCCATCAATTAGTTGCGGTTAAGATCAATTTTT
GTCTAGGGAATGGAATAATTCAATAAAATATGTGTAGTTTTGTTGATGTG
AAAGTAAAAAATCTTTCCCCaagaaatgttaaaaataaCAAGTTAAAATA
CTTTTATCGCATAATTTACATATATacaggaaaatgaaaatattacaaaa
tttaTTNTCTGTAATATTTTCATCGTCCTTCGCTGAGACTTCAATATAAG
AGCAACCATGTTGTACCGCCGTTTGAAGTCCTTTCTCAAAACTTACTTCG
CGCTCTCCCGTTAATTCCAAGTCTTTTTTGTTCCCAACTAAAACACAAGG
GAAATTTTGTCCTTTTTGTTCGCTAACTTCTGCGATAAGTTTCTTTGCTA
CTTCCAATGATTTTGATGATCCGACTgaataaacaacaacaaaagctTGG
CATTTTGTGATGGTTAATCGAAGCATCATTGGAAATTCAAATCCACCTGC
TGTANCAATAGAAACCCAGGGTGAGAggtttatttctatttttgtaaGAA
CAGAAAACCCTGATACCTTTGGAGAGGTACTTAAAAATCGACATTCCTTA
ATACTATTGTGTTTTCCTGAACACGCGCCAATTTGATGACGATTGTCTAT
GTTTAGTGTCAAGTTACACGAGCCCATTCATGTTTCAAGAGTATTTTTCG
ATCGGTAATATCTACTTAAGCTTGatttacattttgaaaaaaaatctttt
aaggtCGCAAAATCTTCTAGCAAGAATCGATAACAAAATATTCAACACAA
TCTAAACTTAAAGGAAAGATGTATCTTCCGTTTTAGATCAATTTTGGAAA
TTTNATAAGTTTGTGTGAATGATCCATTAACTAATCGTTCGATGATACTT
GATTTACCACAAGCTGTTTCTCCTAAAACGGCTACATCGTAATATGGAGT
AACTTCGCCTTTTGGGCTTCGAGCTAACTTCGGTGTTTTCCTCATTATAT
CGCTATAAAATCACAGATCTCCTCAAAATCTTCGTTCGATTTTGTCGTCT
GGTCGCTGCTGCCTCTGTACGGTCGCTGTTAATGTACAAAAATGCTTCTT
CTATACTAATGTATAGAAATGCTTTTGACAAAAGTCGCGCtgtaaaatgt
ttttctccAATAGACGGCAATGGTATTTATACTACTCTTAAAAAATATCC
GGACGCGATTTCTTTCTTGTTTGTATGGTGTGGTTAATCCCCTTTGTTTA
GAAACGGAAAATAAATATGATACTGTTTATGTTCAAATGCAATCCAACTC
GGCGGCATGCGATTAATTTTAATATCGATAGTGACCTATATCAATGCTCT
CTGTTTTAGATTTCTCCGCTCGGCTTTGTCGTATTTTGCTGCCAGGAATG
TGATATCTTTAGTAGGtgccttttcaattttttctttaattttggaACTG
CAACTTCTTCAATTTAAGTGTATGCAGTACACACAAATACAAATCgtgtt
tcttcttcttttctaaTGTTTTCCTTTGCTgtgttcttgaaatatttttc
ttcagcTGCGCGGCGTAGATGCTTCAAGCCTTGAACTCTTACTGTAACCT
CTTTAAGTGACTAGTGATTTGTTGGTGGATCTTTATGTCCTTTATTTATG
CCGTTTCCTACAGCCGTCATTGAGTGGTTCTATACTTGTCTGAACTGATT
TC Coding sequence (CDS) from alignment at scaffold_117:344123..345824 >TCONS_00046856 ID=TCONS_00046856|Name=TCONS_00046856|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_117:344123..345824 (Clytia hemisphaerica)
ttaaaaataaCAAGTTAAAATACTTTTATCGCATAATTTACATATATaca
ggaaaatgaaaatattacaaaatttaTTNTCTGTAATATTTTCATCGTCC
TTCGCTGAGACTTCAATATAAGAGCAACCATGTTGTACCGCCGTTTGAAG
TCCTTTCTCAAAACTTACTTCGCGCTCTCCCGTTAATTCCAAGTCTTTTT
TGTTCCCAACTAAAACACAAGGGAAATTTTGTCCTTTTTGTTCGCTAACT
TCTGCGATAAGTTTCTTTGCTACTTCCAATGATTTTGATGATCCGACTga
ataaacaacaacaaaagctTGGCATTTTGTGATGGTTAATCGAAGCATCA
TTGGAAATTCAAATCCACCTGCTGTANCAATAGAAACCCAGGGTGAGAgg
tttatttctatttttgtaaGAACAGAAAACCCTGATACCTTTGGAGAGGT
ACTTAAAAATCGACATTCCTTAATACTATTGTGTTTTCCTGAACACGCGC
CAATTTGATGACGATTGTCTATGTTTAGTGTCAAGTTACACGAGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046856-exon-scaffold_117-1491911889:344123..345824 | TCONS_00046856-exon-scaffold_117-1491911889:344123..345824 | Clytia hemisphaerica | exon |
| TCONS_00046856-exon-scaffold_117-1510915933:344123..345824 | TCONS_00046856-exon-scaffold_117-1510915933:344123..345824 | Clytia hemisphaerica | exon |
| TCONS_00046856-exon-scaffold_117-1575043694:344123..345824 | TCONS_00046856-exon-scaffold_117-1575043694:344123..345824 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:344123..345824 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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