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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046978 ID=TCONS_00046978|Name=TCONS_00046978|organism=Clytia hemisphaerica|type=transcript|length=3418bp
TGCacacaaagtaaaaaaaaaacccatttttagacacattggcccaaatt
tgcccaaaaaaattattatttgaaaattgggcttcagattttaaatatta
ccatttcaCATCAAAGtgttaaaaatcagaaaaaatatcaatccaatCGC
AAGAAATGCAAGAAATGATCtcttttccctaaaaatgacatatgggaatt
tccccaaataagaaaatccgatttttagcccaaatttgccccaaatttta
tttttcgaaaatcgggcctcgtcactttttgggaatcaccattttgcatc
actgtgcaaaaaatcgaaaaaaataatgagccgatcctgagaaaagcttg
taacagacgaacggaaaACGGTCAAATTGAAGGACGGCAGgtccaaaaag
tcaaagaagatCCTTGGAATTCTCACAACATTATTGACCTTGAACTTCTT
GTCATTATAGAGATGCTAGAGACAAAGTTAAACGGACTAAACAAAAAACT
TCGCGCCAAAAACGAGATGCTAGAGACGAAGTTAAACGAACTAAACGAAA
AACTTCGCGCCAAAAACGAGATGCTAGAGACAAAGTTAAACGAACTAAAC
ATAAAACTTCGCGCCAAAAACGAGATGCTAGAGACAAAGTTAAACGaact
aaacaaaaaaacttCACACCAAAAACGATTAAGTCCCTGAAATTCGCACA
ACATTGAACTTCTTGTCATTATAGAGATGCTAGCGACACGGGTGCATGAG
ATTAATAAAAAACTTCGCGCCAAAAACGAGTAAGTCCCTGAAATTCTCAC
GACAAATGTCATTCAACAATTACTACAATACGGGTGTAGTTTTGCGGctt
aaaaattgatttatgTGCTTCTTTCCCAAACAATCAAAATATAGGACGGA
AATTCAAAtcagatgaagaagaaaatcaatgtTAAAGTCAGATTCTAAAT
ATTTCAATGCGACCCTAATAAACCATATCAAAAGGTAACAGCTCGCTGGA
AAGATGTTTCCGAGTGGATGAATTGAGCAGAATTTCCTGCTATAgagatt
tttcttaaaacaacTCTTTTAGGATCAGGCGTATTGAAAGTGCTATCTAG
CCTCATGTCAAGGACAATAAAGATTCTATGGGAAtggtgttttttatttt
cagtgcACTGGAGGGTATGGACGAAGTGAAAGAAACGATAAGATTTGTTC
TGAAAGTAGTAAATAGTAATTTGGCTTTTAAAAGGGGGGTTGATATGATA
TGGATTGAATTGGAGAGCAGTTTTTCTtgggaaaaatttttccaaaagca
agaaaaaaacaaatttgtgatTTCAATTTAATATTGCCTTTTAGAGCTTC
CGATGAAAACTCCGAAAAGACATCCCTCGTAAACGTGAACTTGTGGCAAA
GCTCTCCAAAGAAAAGGCTTTTGGTACAAGTATGATAGATGAACATGATC
TTCATAGAAGGACTCTGTGCAAACATTCTATCACAAGACTTCACATAATG
ACGTTGTTAAGcttataaaatctttattaTTAATCGGAAAAATTACGTTG
CGGTTGGTTGGCCTAACcaacattttctgaaaatggtcaaagacTTTGCA
TGTCCATTATTAGATTTGACTCAGACTCTTAGTGAGAAAAACAATCGTTT
ATTAATTAACTTTTTAACTTCTTTATCTAGCATGAGGCTCTAAAATTTCA
GCTTAGAGCAGACGTTGATGCAACTTGATCTTCtacatttttttagtttt
ctccATATAAACACTCTTGTTCTAAGTTCTAAGATTTCACTTTCATTATT
TTGACTGTTACTACGAAGGTGGAGCCAATGAATTTCTAATTATTACCATT
TTACTTTAAATGGAAAATTTATTACAACGAGAAATACTCAATCAAATCGA
TCAAaacttttattcaaaattctattttttagCCTGAAAACACAGCCCCA
ATCGTCGAGGAGGCGGAAAATGAAGAACTCAGAGAGCAGATTGATCAAGC
AATCATTGATCTTCAAATTGAGAATGATAAATAATACGAACAAGAAGAAG
TAGGACAGGGGGGGGTaccaagtcagtgtactggaccatagggtacgggt
actaacttgatttttggatttgttttccaaaaaattagaccaccacccta
ctaactttttttcatggtcggggctttgacaccacccttttagtacactg
tactaactttttttcacggtcggggctttgacaccacccttttagtacac
tgtactaactttttttcacggtcggggctttgacaccacccttttattac
actgtactaactttttttcacagccggagctttgataccaccctttGAGT
ACACTGTACTGATGTTTTTCCACAACTAGATTTTTATTAccaccctttca
gtacactgtaGTGACTTCTCCATGACCGGATttttgataccaccctttta
gtacactgtattAGCTGTTTTTTCGATCAGATGATTTTAGAAACCACCCT
TTATAGTGCACTGTTCTAATTTCTTTTTGGCCAGATAAGTTTAATTGCCA
CCACttcaggtaagtgacctaccggatgtgcggcccttaagggtaggttt
ttggactttggaaagtgcactgtaagggttgatttgtgagaaagtgggaa
aaagtgcactgtaagggtgtaaaattttataaaaaaattcgaaaaattac
actataagggtcgattttcagccaaatttttcctgcactgcaAGGGAcca
attttagagacctgatttttgccCGAACGTGTGCAGTCGTTTTCACCCCT
CCCCCCGGTGATTTCActtatatacagatttttttcaattaacaaTCCAA
CAAGGTTactaaaaaacataaaacaatagagcgggtttgtttttataaaa
cttgaAAGCTTCGATTCGAACGTTTACACATTTCAAATTCTTGTTGTTGC
CATAATGAGATAgggccttaaagaaaacataaacaaGATTggacttaagg
ccggtctccaatTGCGCATGCTGCAACTctgaaacaaatccaatcaagtA
AACAGGAAACATTGGGAGAAAATCAGTGTACAATTTGTATAGCTTAACCA
GCCTTGACTTGAAGGTCTCGTGACCAGCTTGGACCAAATTAGGGCAAATA
TACATGGGAATTCACTGGGTTTGTGTTTGTACCACTGAAATTAGTACAAT
GTACTAACTTCTCAGTGTGTATCAATTCAgaacaccaccctttttagtac
agtgtactaactttttcattgtatttttcacagaggaccacccttttagt
acactgtactaactttttcattgtatttttctcagaggaccacccttgta
cactgtactaactcaatttaacctaaaaaatgcacccaccagctatgggc
cagtacactgactcgATA Run BLAST on NCBI transcript from alignment at scaffold_119:74254..77900- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046978 ID=TCONS_00046978|Name=TCONS_00046978|organism=Clytia hemisphaerica|type=transcript|length=3647bp|location=Sequence derived from alignment at scaffold_119:74254..77900- (Clytia hemisphaerica)
TGCACACAAAGTAAAAAAAAAACCCATTTTTAGACACATTGGCCCAAATT
TGCCCAAAAAAATTATTATTTGAAAATTGGGCTTCAGATTTTAAATATTA
CCATTTCACATCAAAGTGTTAAAAATCAGAAAAAATATCAATCCAATCGC
AAGAAATGCAAGAAATGATCTCTTTTCCCTAAAAATGACATATGGGAATT
TCCCCAAATAAGAAAATCCGATTTTTAGCCCAAATTTGCCCCAAATTTTA
TTTTTCGAAAATCGGGCCTCGTCACTTTTTGGGAATCACCATTTTGCATC
ACTGTGCAAAAAATCGAAAAAAATAATGAGCCGATCCTGAGAAAAGCTTG
TAACAGACGAACGGAAAACGGTCAAATTGAAGGACGGCAGGTCCAAAAAG
TCAAAGAAGATCCTTGGAATTCTCACAACATTATTGATCTTAAACTTCTT
GTCTCTATAGAGATGCTGGCGACACAAGGGTGCACGAACTGAATAAAAAG
ATTCGCGCCAATGACGAGTAAGTCCCTGAAATTCTCACAACATATGGTCC
GACAGAGGCACGAAGAGAGAAGGTTTTCGGATCAGCTGCAAGAAAGATTT
TGCGAAAATGAAGACCAAAAAAAATCAAAGACGAGTGAGTCCCTGGAATT
CGCACAACATTATTGACCTTGAACTTCTTGTCATTATAGAGATGCTAGAG
ACAAAGTTAAACGGACTAAACAAAAAACTTCGCGCCAAAAACGAGATGCT
AGAGACGAAGTTAAACGAACTAAACGAAAAACTTCGCGCCAAAAACGAGA
TGCTAGAGACAAAGTTAAACGAACTAAACATAAAACTTCGCGCCAAAAAC
GAGATGCTAGAGACAAAGTTAAACGAACTAAACAAAAAAACTTCACACCA
AAAACGATTAAGTCCCTGAAATTCGCACAACATTGAACTTCTTGTCATTA
TAGAGATGCTAGCGACACGGGTGCATGAGATTAATAAAAAACTTCGCGCC
AAAAACGAGTAAGTCCCTGAAATTCTCACGACAAATGTCATTCAACAATT
ACTACAATACGGGTGTAGTTTTGCGGCTTAAAAATTGATTTATGTGCTTC
TTTCCCAAACAATCAAAATATAGGACGGAAATTCAAATCAGATGAAGAAG
AAAATCAATGTTAAAGTCAGATTCTAAATATTTCAATGCGACCCTAATAA
ACCATATCAAAAGGTAACAGCTCGCTGGAAAGATGTTTCCGAGTGGATGA
ATTGAGCAGAATTTCCTGCTATAGAGATTTTTCTTAAAACAACTCTTTTA
GGATCAGGCGTATTGAAAGTGCTATCTAGCCTCATGTCAAGGACAATAAA
GATTCTATGGGAATGGTGTTTTTTATTTTCAGTGCACTGGAGGGTATGGA
CGAAGTGAAAGAAACGATAAGATTTGTTCTGAAAGTAGTAAATAGTAATT
TGGCTTTTAAAAGGGGGGTTGATATGATATGGATTGAATTGGAGAGCAGT
TTTTCTTGGGAAAAATTTTTCCAAAAGCAAGAAAAAAACAAATTTGTGAT
TTCAATTTAATATTGCCTTTTAGAGCTTCCGATGAAAACTCCGAAAAGAC
ATCCCTCGTAAACGTGAACTTGTGGCAAAGCTCTCCAAAGAAAAGGCTTT
TGGTACAAGTATGATAGATGAACATGATCTTCATAGAAGGACTCTGTGCA
AACATTCTATCACAAGACTTCACATAATGACGTTGTTAAGCTTATAAAAT
CTTTATTATTAATCGGAAAAATTACGTTGCGGTTGGTTGGCCTAACCAAC
ATTTTCTGAAAATGGTCAAAGACTTTGCATGTCCATTATTAGATTTGACT
CAGACTCTTAGTGAGAAAAACAATCGTTTATTAATTAACTTTTTAACTTC
TTTATCTAGCATGAGGCTCTAAAATTTCAGCTTAGAGCAGACGTTGATGC
AACTTGATCTTCTACATTTTTTTAGTTTTCTCCATATAAACACTCTTGTT
CTAAGTTCTAAGATTTCACTTTCATTATTTTGACTGTTACTACGAAGGTG
GAGCCAATGAATTTCTAATTATTACCATTTTACTTTAAATGGAAAATTTA
TTACAACGAGAAATACTCAATCAAATCGATCAAAACTTTTATTCAAAATT
CTATTTTTTAGCCTGAAAACACAGCCCCAATCGTCGAGGAGGCGGAAAAT
GAAGAACTCAGAGAGCAGATTGATCAAGCAATCATTGATCTTCAAATTGA
GAATGATAAATAATACGAACAAGAAGAAGTAGGACAGGGGGGGGTACCAA
GTCAGTGTACTGGACCATAGGGTACGGGTACTAACTTGATTTTTGGATTT
GTTTTCCAAAAAATTAGACCACCACCCTACTAACTTTTTTTCATGGTCGG
GGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCACGGTC
GGGGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCACGG
TCGGGGCTTTGACACCACCCTTTTATTACACTGTACTAACTTTTTTTCAC
AGCCGGAGCTTTGATACCACCCTTTGAGTACACTGTACTGATGTTTTTCC
ACAACTAGATTTTTATTACCACCCTTTCAGTACACTGTAGTGACTTCTCC
ATGACCGGATTTTTGATACCACCCTTTTAGTACACTGTATTAGCTGTTTT
TTCGATCAGATGATTTTAGAAACCACCCTTTATAGTGCACTGTTCTAATT
TCTTTTTGGCCAGATAAGTTTAATTGCCACCACTTCAGGTAAGTGACCTA
CCGGATGTGCGGCCCTTAAGGGTAGGTTTTTGGACTTTGGAAAGTGCACT
GTAAGGGTTGATTTGTGAGAAAGTGGGAAAAAGTGCACTGTAAGGGTGTA
AAATTTTATAAAAAAATTCGAAAAATTACACTATAAGGGTCGATTTTCAG
CCAAATTTTTCCTGCACTGCAAGGGACCAATTTTAGAGACCTGATTTTTG
CCCGAACGTGTGCAGTCGTTTTCACCCCTCCCCCCGGTGATTTCACTTAT
ATACAGATTTTTTTCAATTAACAATCCAACAAGGTTACTAAAAAACATAA
AACAATAGAGCGGGTTTGTTTTTATAAAACTTGAAAGCTTCGATTCGAAC
GTTTACACATTTCAAATTCTTGTTGTTGCCATAATGAGATAGGGCCTTAA
AGAAAACATAAACAAGATTGGACTTAAGGCCGGTCTCCAATTGCGCATGC
TGCAACTCTGAAACAAATCCAATCAAGTAAACAGGAAACATTGGGAGAAA
ATCAGTGTACAATTTGTATAGCTTAACCAGCCTTGACTTGAAGGTCTCGT
GACCAGCTTGGACCAAATTAGGGCAAATATACATGGGAATTCACTGGGTT
TGTGTTTGTACCACTGAAATTAGTACAATGTACTAACTTCTCAGTGTGTA
TCAATTCAGAACACCACCCTTTTTAGTACAGTGTACTAACTTTTTCATTG
TATTTTTCACAGAGGACCACCCTTTTAGTACACTGTACTAACTTTTTCAT
TGTATTTTTCTCAGAGGACCACCCTTGTACACTGTACTAACTCAATTTAA
CCTAAAAAATGCACCCACCAGCTATGGGCCAGTACACTGACTCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046978-exon-scaffold_119-1575043694:77472..77900 | TCONS_00046978-exon-scaffold_119-1575043694:77472..77900 | Clytia hemisphaerica | exon |
| TCONS_00046978-exon-scaffold_119-1575043694:74254..77242 | TCONS_00046978-exon-scaffold_119-1575043694:74254..77242 | Clytia hemisphaerica | exon |
| TCONS_00046978-exon-scaffold_119-1510915933:77472..77900 | TCONS_00046978-exon-scaffold_119-1510915933:77472..77900 | Clytia hemisphaerica | exon |
| TCONS_00046978-exon-scaffold_119-1510915933:74254..77242 | TCONS_00046978-exon-scaffold_119-1510915933:74254..77242 | Clytia hemisphaerica | exon |
| TCONS_00046978-exon-scaffold_119-1491911889:77472..77900 | TCONS_00046978-exon-scaffold_119-1491911889:77472..77900 | Clytia hemisphaerica | exon |
| TCONS_00046978-exon-scaffold_119-1491911889:74254..77242 | TCONS_00046978-exon-scaffold_119-1491911889:74254..77242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_119 | supercontig | scaffold_119:74254..77900 - |
Blast
The following BLAST results are available for this feature:
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