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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046979 ID=TCONS_00046979|Name=TCONS_00046979|organism=Clytia hemisphaerica|type=transcript|length=3530bp
TGCacacaaagtaaaaaaaaaacccatttttagacacattggcccaaatt
tgcccaaaaaaattattatttgaaaattgggcttcagattttaaatatta
ccatttcaCATCAAAGtgttaaaaatcagaaaaaatatcaatccaatCGC
AAGAAATGCAAGAAATGATCtcttttccctaaaaatgacatatgggaatt
tccccaaataagaaaatccgatttttagcccaaatttgccccaaatttta
tttttcgaaaatcgggcctcgtcactttttgggaatcaccattttgcatc
actgtgcaaaaaatcgaaaaaaataatgagccgatcctgagaaaagcttg
taacagacgaacggaaaACGGTCAAATTGAAGGACGGCAGgtccaaaaag
tcaaagaagatCCTTGGAATTCTCACAACATTATTGATCTTAAACTTCTT
GTCTCTATAGAGATGCTGGCGACACAAGGGTGCAcgaactgaataaaaag
attCGCGCCAATGACGAGTAAGTCCCTGAAATTCTCACAACATTATTGAC
CTTGAACTTCTTGTCATTATAGAGATGCTAGAGACAAAGTTAAACGGACT
AAACAAAAAACTTCGCGCCAAAAACGAGATGCTAGAGACGAAGTTAAACG
AACTAAACGAAAAACTTCGCGCCAAAAACGAGATGCTAGAGACAAAGTTA
AACGAACTAAACATAAAACTTCGCGCCAAAAACGAGATGCTAGAGACAAA
GTTAAACGaactaaacaaaaaaacttCACACCAAAAACGATTAAGTCCCT
GAAATTCGCACAACATTGAACTTCTTGTCATTATAGAGATGCTAGCGACA
CGGGTGCATGAGATTAATAAAAAACTTCGCGCCAAAAACGAGTAAGTCCC
TGAAATTCTCACGACAAATGTCATTCAACAATTACTACAATACGGGTGTA
GTTTTGCGGcttaaaaattgatttatgTGCTTCTTTCCCAAACAATCAAA
ATATAGGACGGAAATTCAAAtcagatgaagaagaaaatcaatgtTAAAGT
CAGATTCTAAATATTTCAATGCGACCCTAATAAACCATATCAAAAGGTAA
CAGCTCGCTGGAAAGATGTTTCCGAGTGGATGAATTGAGCAGAATTTCCT
GCTATAgagatttttcttaaaacaacTCTTTTAGGATCAGGCGTATTGAA
AGTGCTATCTAGCCTCATGTCAAGGACAATAAAGATTCTATGGGAAtggt
gttttttattttcagtgcACTGGAGGGTATGGACGAAGTGAAAGAAACGA
TAAGATTTGTTCTGAAAGTAGTAAATAGTAATTTGGCTTTTAAAAGGGGG
GTTGATATGATATGGATTGAATTGGAGAGCAGTTTTTCTtgggaaaaatt
tttccaaaagcaagaaaaaaacaaatttgtgatTTCAATTTAATATTGCC
TTTTAGAGCTTCCGATGAAAACTCCGAAAAGACATCCCTCGTAAACGTGA
ACTTGTGGCAAAGCTCTCCAAAGAAAAGGCTTTTGGTACAAGTATGATAG
ATGAACATGATCTTCATAGAAGGACTCTGTGCAAACATTCTATCACAAGA
CTTCACATAATGACGTTGTTAAGcttataaaatctttattaTTAATCGGA
AAAATTACGTTGCGGTTGGTTGGCCTAACcaacattttctgaaaatggtc
aaagacTTTGCATGTCCATTATTAGATTTGACTCAGACTCTTAGTGAGAA
AAACAATCGTTTATTAATTAACTTTTTAACTTCTTTATCTAGCATGAGGC
TCTAAAATTTCAGCTTAGAGCAGACGTTGATGCAACTTGATCTTCtacat
ttttttagttttctccATATAAACACTCTTGTTCTAAGTTCTAAGATTTC
ACTTTCATTATTTTGACTGTTACTACGAAGGTGGAGCCAATGAATTTCTA
ATTATTACCATTTTACTTTAAATGGAAAATTTATTACAACGAGAAATACT
CAATCAAATCGATCAAaacttttattcaaaattctattttttagCCTGAA
AACACAGCCCCAATCGTCGAGGAGGCGGAAAATGAAGAACTCAGAGAGCA
GATTGATCAAGCAATCATTGATCTTCAAATTGAGAATGATAAATAATACG
AACAAGAAGAAGTAGGACAGGGGGGGGTaccaagtcagtgtactggacca
tagggtacgggtactaacttgatttttggatttgttttccaaaaaattag
accaccaccctactaactttttttcatggtcggggctttgacaccaccct
tttagtacactgtactaactttttttcacggtcggggctttgacaccacc
cttttagtacactgtactaactttttttcacggtcggggctttgacacca
cccttttattacactgtactaactttttttcacagccggagctttgatac
caccctttGAGTACACTGTACTGATGTTTTTCCACAACTAGATTTTTATT
AccaccctttcagtacactgtaGTGACTTCTCCATGACCGGATttttgat
accacccttttagtacactgtattAGCTGTTTTTTCGATCAGATGATTTT
AGAAACCACCCTTTATAGTGCACTGTTCTAATTTCTTTTTGGCCAGATAA
GTTTAATTGCCACCACttcaggtaagtgacctaccggatgtgcggccctt
aagggtaggtttttggactttggaaagtgcactgtaagggttgatttgtg
agaaagtgggaaaaagtgcactgtaagggtgtaaaattttataaaaaaat
tcgaaaaattacactataagggtcgattttcagccaaatttttcctgcac
tgcaAGGGAccaattttagagacctgatttttgccCGAACGTGTGCAGTC
GTTTTCACCCCTCCCCCCGGTGATTTCActtatatacagatttttttcaa
ttaacaaTCCAACAAGGTTactaaaaaacataaaacaatagagcgggttt
gtttttataaaacttgaAAGCTTCGATTCGAACGTTTACACATTTCAAAT
TCTTGTTGTTGCCATAATGAGATAgggccttaaagaaaacataaacaaGA
TTggacttaaggccggtctccaatTGCGCATGCTGCAACTctgaaacaaa
tccaatcaagtAAACAGGAAACATTGGGAGAAAATCAGTGTACAATTTGT
ATAGCTTAACCAGCCTTGACTTGAAGGTCTCGTGACCAGCTTGGACCAAA
TTAGGGCAAATATACATGGGAATTCACTGGGTTTGTGTTTGTACCACTGA
AATTAGTACAATGTACTAACTTCTCAGTGTGTATCAATTCAgaacaccac
cctttttagtacagtgtactaactttttcattgtatttttcacagaggac
cacccttttagtacactgtactaactttttcattgtatttttctcagagg
accacccttgtacactgtactaactcaatttaacctaaaaaatgcaccca
ccagctatgggccagtacactgactcgATA Run BLAST on NCBI transcript from alignment at scaffold_119:74254..77900- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046979 ID=TCONS_00046979|Name=TCONS_00046979|organism=Clytia hemisphaerica|type=transcript|length=3647bp|location=Sequence derived from alignment at scaffold_119:74254..77900- (Clytia hemisphaerica)
TGCACACAAAGTAAAAAAAAAACCCATTTTTAGACACATTGGCCCAAATT
TGCCCAAAAAAATTATTATTTGAAAATTGGGCTTCAGATTTTAAATATTA
CCATTTCACATCAAAGTGTTAAAAATCAGAAAAAATATCAATCCAATCGC
AAGAAATGCAAGAAATGATCTCTTTTCCCTAAAAATGACATATGGGAATT
TCCCCAAATAAGAAAATCCGATTTTTAGCCCAAATTTGCCCCAAATTTTA
TTTTTCGAAAATCGGGCCTCGTCACTTTTTGGGAATCACCATTTTGCATC
ACTGTGCAAAAAATCGAAAAAAATAATGAGCCGATCCTGAGAAAAGCTTG
TAACAGACGAACGGAAAACGGTCAAATTGAAGGACGGCAGGTCCAAAAAG
TCAAAGAAGATCCTTGGAATTCTCACAACATTATTGATCTTAAACTTCTT
GTCTCTATAGAGATGCTGGCGACACAAGGGTGCACGAACTGAATAAAAAG
ATTCGCGCCAATGACGAGTAAGTCCCTGAAATTCTCACAACATATGGTCC
GACAGAGGCACGAAGAGAGAAGGTTTTCGGATCAGCTGCAAGAAAGATTT
TGCGAAAATGAAGACCAAAAAAAATCAAAGACGAGTGAGTCCCTGGAATT
CGCACAACATTATTGACCTTGAACTTCTTGTCATTATAGAGATGCTAGAG
ACAAAGTTAAACGGACTAAACAAAAAACTTCGCGCCAAAAACGAGATGCT
AGAGACGAAGTTAAACGAACTAAACGAAAAACTTCGCGCCAAAAACGAGA
TGCTAGAGACAAAGTTAAACGAACTAAACATAAAACTTCGCGCCAAAAAC
GAGATGCTAGAGACAAAGTTAAACGAACTAAACAAAAAAACTTCACACCA
AAAACGATTAAGTCCCTGAAATTCGCACAACATTGAACTTCTTGTCATTA
TAGAGATGCTAGCGACACGGGTGCATGAGATTAATAAAAAACTTCGCGCC
AAAAACGAGTAAGTCCCTGAAATTCTCACGACAAATGTCATTCAACAATT
ACTACAATACGGGTGTAGTTTTGCGGCTTAAAAATTGATTTATGTGCTTC
TTTCCCAAACAATCAAAATATAGGACGGAAATTCAAATCAGATGAAGAAG
AAAATCAATGTTAAAGTCAGATTCTAAATATTTCAATGCGACCCTAATAA
ACCATATCAAAAGGTAACAGCTCGCTGGAAAGATGTTTCCGAGTGGATGA
ATTGAGCAGAATTTCCTGCTATAGAGATTTTTCTTAAAACAACTCTTTTA
GGATCAGGCGTATTGAAAGTGCTATCTAGCCTCATGTCAAGGACAATAAA
GATTCTATGGGAATGGTGTTTTTTATTTTCAGTGCACTGGAGGGTATGGA
CGAAGTGAAAGAAACGATAAGATTTGTTCTGAAAGTAGTAAATAGTAATT
TGGCTTTTAAAAGGGGGGTTGATATGATATGGATTGAATTGGAGAGCAGT
TTTTCTTGGGAAAAATTTTTCCAAAAGCAAGAAAAAAACAAATTTGTGAT
TTCAATTTAATATTGCCTTTTAGAGCTTCCGATGAAAACTCCGAAAAGAC
ATCCCTCGTAAACGTGAACTTGTGGCAAAGCTCTCCAAAGAAAAGGCTTT
TGGTACAAGTATGATAGATGAACATGATCTTCATAGAAGGACTCTGTGCA
AACATTCTATCACAAGACTTCACATAATGACGTTGTTAAGCTTATAAAAT
CTTTATTATTAATCGGAAAAATTACGTTGCGGTTGGTTGGCCTAACCAAC
ATTTTCTGAAAATGGTCAAAGACTTTGCATGTCCATTATTAGATTTGACT
CAGACTCTTAGTGAGAAAAACAATCGTTTATTAATTAACTTTTTAACTTC
TTTATCTAGCATGAGGCTCTAAAATTTCAGCTTAGAGCAGACGTTGATGC
AACTTGATCTTCTACATTTTTTTAGTTTTCTCCATATAAACACTCTTGTT
CTAAGTTCTAAGATTTCACTTTCATTATTTTGACTGTTACTACGAAGGTG
GAGCCAATGAATTTCTAATTATTACCATTTTACTTTAAATGGAAAATTTA
TTACAACGAGAAATACTCAATCAAATCGATCAAAACTTTTATTCAAAATT
CTATTTTTTAGCCTGAAAACACAGCCCCAATCGTCGAGGAGGCGGAAAAT
GAAGAACTCAGAGAGCAGATTGATCAAGCAATCATTGATCTTCAAATTGA
GAATGATAAATAATACGAACAAGAAGAAGTAGGACAGGGGGGGGTACCAA
GTCAGTGTACTGGACCATAGGGTACGGGTACTAACTTGATTTTTGGATTT
GTTTTCCAAAAAATTAGACCACCACCCTACTAACTTTTTTTCATGGTCGG
GGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCACGGTC
GGGGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCACGG
TCGGGGCTTTGACACCACCCTTTTATTACACTGTACTAACTTTTTTTCAC
AGCCGGAGCTTTGATACCACCCTTTGAGTACACTGTACTGATGTTTTTCC
ACAACTAGATTTTTATTACCACCCTTTCAGTACACTGTAGTGACTTCTCC
ATGACCGGATTTTTGATACCACCCTTTTAGTACACTGTATTAGCTGTTTT
TTCGATCAGATGATTTTAGAAACCACCCTTTATAGTGCACTGTTCTAATT
TCTTTTTGGCCAGATAAGTTTAATTGCCACCACTTCAGGTAAGTGACCTA
CCGGATGTGCGGCCCTTAAGGGTAGGTTTTTGGACTTTGGAAAGTGCACT
GTAAGGGTTGATTTGTGAGAAAGTGGGAAAAAGTGCACTGTAAGGGTGTA
AAATTTTATAAAAAAATTCGAAAAATTACACTATAAGGGTCGATTTTCAG
CCAAATTTTTCCTGCACTGCAAGGGACCAATTTTAGAGACCTGATTTTTG
CCCGAACGTGTGCAGTCGTTTTCACCCCTCCCCCCGGTGATTTCACTTAT
ATACAGATTTTTTTCAATTAACAATCCAACAAGGTTACTAAAAAACATAA
AACAATAGAGCGGGTTTGTTTTTATAAAACTTGAAAGCTTCGATTCGAAC
GTTTACACATTTCAAATTCTTGTTGTTGCCATAATGAGATAGGGCCTTAA
AGAAAACATAAACAAGATTGGACTTAAGGCCGGTCTCCAATTGCGCATGC
TGCAACTCTGAAACAAATCCAATCAAGTAAACAGGAAACATTGGGAGAAA
ATCAGTGTACAATTTGTATAGCTTAACCAGCCTTGACTTGAAGGTCTCGT
GACCAGCTTGGACCAAATTAGGGCAAATATACATGGGAATTCACTGGGTT
TGTGTTTGTACCACTGAAATTAGTACAATGTACTAACTTCTCAGTGTGTA
TCAATTCAGAACACCACCCTTTTTAGTACAGTGTACTAACTTTTTCATTG
TATTTTTCACAGAGGACCACCCTTTTAGTACACTGTACTAACTTTTTCAT
TGTATTTTTCTCAGAGGACCACCCTTGTACACTGTACTAACTCAATTTAA
CCTAAAAAATGCACCCACCAGCTATGGGCCAGTACACTGACTCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046979-exon-scaffold_119-1575043694:77360..77900 | TCONS_00046979-exon-scaffold_119-1575043694:77360..77900 | Clytia hemisphaerica | exon |
| TCONS_00046979-exon-scaffold_119-1575043694:74254..77242 | TCONS_00046979-exon-scaffold_119-1575043694:74254..77242 | Clytia hemisphaerica | exon |
| TCONS_00046979-exon-scaffold_119-1510915933:77360..77900 | TCONS_00046979-exon-scaffold_119-1510915933:77360..77900 | Clytia hemisphaerica | exon |
| TCONS_00046979-exon-scaffold_119-1510915933:74254..77242 | TCONS_00046979-exon-scaffold_119-1510915933:74254..77242 | Clytia hemisphaerica | exon |
| TCONS_00046979-exon-scaffold_119-1491911889:77360..77900 | TCONS_00046979-exon-scaffold_119-1491911889:77360..77900 | Clytia hemisphaerica | exon |
| TCONS_00046979-exon-scaffold_119-1491911889:74254..77242 | TCONS_00046979-exon-scaffold_119-1491911889:74254..77242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_119 | supercontig | scaffold_119:74254..77900 - |
Blast
The following BLAST results are available for this feature:
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