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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046980 ID=TCONS_00046980|Name=TCONS_00046980|organism=Clytia hemisphaerica|type=transcript|length=2704bp
TGGCGACACAAGGGTGCAtgaactgaataaaaagattCGCGCCAATGACG
AGTAAGCCCCTGAAATTATCACAACATTATTGACCTTGAACTTCTTGTCA
TTATAGAGATGCTAGAGACAAAGTTAAACGGACTAAACAAAAAACTTCGC
GCCAAAAACGAGATGCTAGAGACGAAGTTAAACGAACTAAACGAAAAACT
TCGCGCCAAAAACGAGATGCTAGAGACAAAGTTAAACGAACTAAACATAA
AACTTCGCGCCAAAAACGAGATGCTAGAGACAAAGTTAAACGaactaaac
aaaaaaacttCACACCAAAAACGATTAAGTCCCTGAAATTCGCACAACAT
TGAACTTCTTGTCATTATAGAGATGCTAGCGACACGGGTGCATGAGATTA
ATAAAAAACTTCGCGCCAAAAACGAGTAAGTCCCTGAAATTCTCACGACA
AATGTCATTCAACAATTACTACAATACGGGTGTAGTTTTGCGGcttaaaa
attgatttatgTGCTTCTTTCCCAAACAATCAAAATATAGGACGGAAATT
CAAAtcagatgaagaagaaaatcaatgtTAAAGTCAGATTCTAAATATTT
CAATGCGACCCTAATAAACCATATCAAAAGAGCTTCCGATGAAAACTCCG
AAAAGACATCCCTCGTAAACGTGAACTTGTGGCAAAGCTCTCCAAAGAAA
AGGCTTTTGGTACAAGTATGATAGATGAACATGATCTTCATAGAAGGACT
CTGTGCAAACATTCTATCACAAGACTTCACATAATGACGTTGTTAAGctt
ataaaatctttattaTTAATCGGAAAAATTACGTTGCGGTTGGTTGGCCT
AACcaacattttctgaaaatggtcaaagacTTTGCATGTCCATTATTAGA
TTTGACTCAGACTCTTAGTGAGAAAAACAATCGTTTATTAATTAACTTTT
TAACTTCTTTATCTAGCATGAGGCTCTAAAATTTCAGCTTAGAGCAGACG
TTGATGCAACTTGATCTTCtacatttttttagttttctccATATAAACAC
TCTTGTTCTAAGTTCTAAGATTTCACTTTCATTATTTTGACTGTTACTAC
GAAGGTGGAGCCAATGAATTTCTAATTATTACCATTTTACTTTAAATGGA
AAATTTATTACAACGAGAAATACTCAATCAAATCGATCAAaacttttatt
caaaattctattttttagCCTGAAAACACAGCCCCAATCGTCGAGGAGGC
GGAAAATGAAGAACTCAGAGAGCAGATTGATCAAGCAATCATTGATCTTC
AAATTGAGAATGATAAATAATACGAACAAGAAGAAGTAGGACAGGGGGGG
GTaccaagtcagtgtactggaccatagggtacgggtactaacttgatttt
tggatttgttttccaaaaaattagaccaccaccctactaactttttttca
tggtcggggctttgacaccacccttttagtacactgtactaacttttttt
cacggtcggggctttgacaccacccttttagtacactgtactaacttttt
ttcacggtcggggctttgacaccacccttttattacactgtactaacttt
ttttcacagccggagctttgataccaccctttGAGTACACTGTACTGATG
TTTTTCCACAACTAGATTTTTATTAccaccctttcagtacactgtaGTGA
CTTCTCCATGACCGGATttttgataccacccttttagtacactgtattAG
CTGTTTTTTCGATCAGATGATTTTAGAAACCACCCTTTATAGTGCACTGT
TCTAATTTCTTTTTGGCCAGATAAGTTTAATTGCCACCACttcaggtaag
tgacctaccggatgtgcggcccttaagggtaggtttttggactttggaaa
gtgcactgtaagggttgatttgtgagaaagtgggaaaaagtgcactgtaa
gggtgtaaaattttataaaaaaattcgaaaaattacactataagggtcga
ttttcagccaaatttttcctgcactgcaAGGGAccaattttagagacctg
atttttgccCGAACGTGTGCAGTCGTTTTCACCCCTCCCCCCGGTGATTT
CActtatatacagatttttttcaattaacaaTCCAACAAGGTTactaaaa
aacataaaacaatagagcgggtttgtttttataaaacttgaAAGCTTCGA
TTCGAACGTTTACACATTTCAAATTCTTGTTGTTGCCATAATGAGATAgg
gccttaaagaaaacataaacaaGATTggacttaaggccggtctccaatTG
CGCATGCTGCAACTctgaaacaaatccaatcaagtAAACAGGAAACATTG
GGAGAAAATCAGTGTACAATTTGTATAGCTTAACCAGCCTTGACTTGAAG
GTCTCGTGACCAGCTTGGACCAAATTAGGGCAAATATACATGGGAATTCA
CTGGGTTTGTGTTTGTACCACTGAAATTAGTACAATGTACTAACTTCTCA
GTGTGTATCAATTCAgaacaccaccctttttagtacagtgtactaacttt
ttcattgtatttttcacagaggaccacccttttagtacactgtactaact
ttttcattgtatttttctcagaggaccacccttgtacactgtactaactc
aatttaacctaaaaaatgcacccaccagctatgggccagtacactgactc
gATA Run BLAST on NCBI transcript from alignment at scaffold_119:74254..78519- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046980 ID=TCONS_00046980|Name=TCONS_00046980|organism=Clytia hemisphaerica|type=transcript|length=4266bp|location=Sequence derived from alignment at scaffold_119:74254..78519- (Clytia hemisphaerica)
TGGCGACACAAGGGTGCATGAACTGAATAAAAAGATTCGCGCCAATGACG
AGTAAGCCCCTGAAATTATCACAACATATGGTCCGACAGAGGCACGAAGA
GAGAAGGTTTTCGGATCAGCTGCAAGAGAAATGAAAATGTAGACCAAACA
AGCAACATGCTGAATGGACCTACCTGTTGATCAAAATCAGATAAAAAAGG
ACAAATATCAACAGAGTAAGAAAGTGTAGGAAGCAGCTTAGATTACCATG
AGATTAACTGTGAAGTATAGTTAAGGTGGTATGACTTATAATCGTAGATA
CTGGAGTGAATAAATATTTTGCCGTGGTTTCCCTATTGACGATAAAGAGT
GATTTTCACCAAAGTCCGAAAAAACCCATTTTAGTTTCTGGCCCAAATTT
GCCCATTTTATATCACTATGCAAAAAACAAGAGAAAATACCAAGCCGATC
ACGAAAAATGCTCAATTTCCCTAAATATGACAAAAGGGAATTTCCCTAAA
TAAGAAAACCTGATTCTTACGGCCAAAAAAAATTTCCAGAAAAAATAACT
TGAGCCACTTTTTGGAGAACCTTAATTTCTATCTTGCCTAAAAAATTAGA
AAAAATCTAACGAAGCAAATGCACACAAAGTAAAAAAAAAACCCATTTTT
AGACACATTGGCCCAAATTTGCCCAAAAAAATTATTATTTGAAAATTGGG
CTTCAGATTTTAAATATTACCATTTCACATCAAAGTGTTAAAAATCAGAA
AAAATATCAATCCAATCGCAAGAAATGCAAGAAATGATCTCTTTTCCCTA
AAAATGACATATGGGAATTTCCCCAAATAAGAAAATCCGATTTTTAGCCC
AAATTTGCCCCAAATTTTATTTTTCGAAAATCGGGCCTCGTCACTTTTTG
GGAATCACCATTTTGCATCACTGTGCAAAAAATCGAAAAAAATAATGAGC
CGATCCTGAGAAAAGCTTGTAACAGACGAACGGAAAACGGTCAAATTGAA
GGACGGCAGGTCCAAAAAGTCAAAGAAGATCCTTGGAATTCTCACAACAT
TATTGATCTTAAACTTCTTGTCTCTATAGAGATGCTGGCGACACAAGGGT
GCACGAACTGAATAAAAAGATTCGCGCCAATGACGAGTAAGTCCCTGAAA
TTCTCACAACATATGGTCCGACAGAGGCACGAAGAGAGAAGGTTTTCGGA
TCAGCTGCAAGAAAGATTTTGCGAAAATGAAGACCAAAAAAAATCAAAGA
CGAGTGAGTCCCTGGAATTCGCACAACATTATTGACCTTGAACTTCTTGT
CATTATAGAGATGCTAGAGACAAAGTTAAACGGACTAAACAAAAAACTTC
GCGCCAAAAACGAGATGCTAGAGACGAAGTTAAACGAACTAAACGAAAAA
CTTCGCGCCAAAAACGAGATGCTAGAGACAAAGTTAAACGAACTAAACAT
AAAACTTCGCGCCAAAAACGAGATGCTAGAGACAAAGTTAAACGAACTAA
ACAAAAAAACTTCACACCAAAAACGATTAAGTCCCTGAAATTCGCACAAC
ATTGAACTTCTTGTCATTATAGAGATGCTAGCGACACGGGTGCATGAGAT
TAATAAAAAACTTCGCGCCAAAAACGAGTAAGTCCCTGAAATTCTCACGA
CAAATGTCATTCAACAATTACTACAATACGGGTGTAGTTTTGCGGCTTAA
AAATTGATTTATGTGCTTCTTTCCCAAACAATCAAAATATAGGACGGAAA
TTCAAATCAGATGAAGAAGAAAATCAATGTTAAAGTCAGATTCTAAATAT
TTCAATGCGACCCTAATAAACCATATCAAAAGGTAACAGCTCGCTGGAAA
GATGTTTCCGAGTGGATGAATTGAGCAGAATTTCCTGCTATAGAGATTTT
TCTTAAAACAACTCTTTTAGGATCAGGCGTATTGAAAGTGCTATCTAGCC
TCATGTCAAGGACAATAAAGATTCTATGGGAATGGTGTTTTTTATTTTCA
GTGCACTGGAGGGTATGGACGAAGTGAAAGAAACGATAAGATTTGTTCTG
AAAGTAGTAAATAGTAATTTGGCTTTTAAAAGGGGGGTTGATATGATATG
GATTGAATTGGAGAGCAGTTTTTCTTGGGAAAAATTTTTCCAAAAGCAAG
AAAAAAACAAATTTGTGATTTCAATTTAATATTGCCTTTTAGAGCTTCCG
ATGAAAACTCCGAAAAGACATCCCTCGTAAACGTGAACTTGTGGCAAAGC
TCTCCAAAGAAAAGGCTTTTGGTACAAGTATGATAGATGAACATGATCTT
CATAGAAGGACTCTGTGCAAACATTCTATCACAAGACTTCACATAATGAC
GTTGTTAAGCTTATAAAATCTTTATTATTAATCGGAAAAATTACGTTGCG
GTTGGTTGGCCTAACCAACATTTTCTGAAAATGGTCAAAGACTTTGCATG
TCCATTATTAGATTTGACTCAGACTCTTAGTGAGAAAAACAATCGTTTAT
TAATTAACTTTTTAACTTCTTTATCTAGCATGAGGCTCTAAAATTTCAGC
TTAGAGCAGACGTTGATGCAACTTGATCTTCTACATTTTTTTAGTTTTCT
CCATATAAACACTCTTGTTCTAAGTTCTAAGATTTCACTTTCATTATTTT
GACTGTTACTACGAAGGTGGAGCCAATGAATTTCTAATTATTACCATTTT
ACTTTAAATGGAAAATTTATTACAACGAGAAATACTCAATCAAATCGATC
AAAACTTTTATTCAAAATTCTATTTTTTAGCCTGAAAACACAGCCCCAAT
CGTCGAGGAGGCGGAAAATGAAGAACTCAGAGAGCAGATTGATCAAGCAA
TCATTGATCTTCAAATTGAGAATGATAAATAATACGAACAAGAAGAAGTA
GGACAGGGGGGGGTACCAAGTCAGTGTACTGGACCATAGGGTACGGGTAC
TAACTTGATTTTTGGATTTGTTTTCCAAAAAATTAGACCACCACCCTACT
AACTTTTTTTCATGGTCGGGGCTTTGACACCACCCTTTTAGTACACTGTA
CTAACTTTTTTTCACGGTCGGGGCTTTGACACCACCCTTTTAGTACACTG
TACTAACTTTTTTTCACGGTCGGGGCTTTGACACCACCCTTTTATTACAC
TGTACTAACTTTTTTTCACAGCCGGAGCTTTGATACCACCCTTTGAGTAC
ACTGTACTGATGTTTTTCCACAACTAGATTTTTATTACCACCCTTTCAGT
ACACTGTAGTGACTTCTCCATGACCGGATTTTTGATACCACCCTTTTAGT
ACACTGTATTAGCTGTTTTTTCGATCAGATGATTTTAGAAACCACCCTTT
ATAGTGCACTGTTCTAATTTCTTTTTGGCCAGATAAGTTTAATTGCCACC
ACTTCAGGTAAGTGACCTACCGGATGTGCGGCCCTTAAGGGTAGGTTTTT
GGACTTTGGAAAGTGCACTGTAAGGGTTGATTTGTGAGAAAGTGGGAAAA
AGTGCACTGTAAGGGTGTAAAATTTTATAAAAAAATTCGAAAAATTACAC
TATAAGGGTCGATTTTCAGCCAAATTTTTCCTGCACTGCAAGGGACCAAT
TTTAGAGACCTGATTTTTGCCCGAACGTGTGCAGTCGTTTTCACCCCTCC
CCCCGGTGATTTCACTTATATACAGATTTTTTTCAATTAACAATCCAACA
AGGTTACTAAAAAACATAAAACAATAGAGCGGGTTTGTTTTTATAAAACT
TGAAAGCTTCGATTCGAACGTTTACACATTTCAAATTCTTGTTGTTGCCA
TAATGAGATAGGGCCTTAAAGAAAACATAAACAAGATTGGACTTAAGGCC
GGTCTCCAATTGCGCATGCTGCAACTCTGAAACAAATCCAATCAAGTAAA
CAGGAAACATTGGGAGAAAATCAGTGTACAATTTGTATAGCTTAACCAGC
CTTGACTTGAAGGTCTCGTGACCAGCTTGGACCAAATTAGGGCAAATATA
CATGGGAATTCACTGGGTTTGTGTTTGTACCACTGAAATTAGTACAATGT
ACTAACTTCTCAGTGTGTATCAATTCAGAACACCACCCTTTTTAGTACAG
TGTACTAACTTTTTCATTGTATTTTTCACAGAGGACCACCCTTTTAGTAC
ACTGTACTAACTTTTTCATTGTATTTTTCTCAGAGGACCACCCTTGTACA
CTGTACTAACTCAATTTAACCTAAAAAATGCACCCACCAGCTATGGGCCA
GTACACTGACTCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046980-exon-scaffold_119-1575043694:78445..78519 | TCONS_00046980-exon-scaffold_119-1575043694:78445..78519 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1575043694:76688..77242 | TCONS_00046980-exon-scaffold_119-1575043694:76688..77242 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1575043694:74254..76327 | TCONS_00046980-exon-scaffold_119-1575043694:74254..76327 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1510915933:78445..78519 | TCONS_00046980-exon-scaffold_119-1510915933:78445..78519 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1510915933:76688..77242 | TCONS_00046980-exon-scaffold_119-1510915933:76688..77242 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1510915933:74254..76327 | TCONS_00046980-exon-scaffold_119-1510915933:74254..76327 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1491911889:78445..78519 | TCONS_00046980-exon-scaffold_119-1491911889:78445..78519 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1491911889:76688..77242 | TCONS_00046980-exon-scaffold_119-1491911889:76688..77242 | Clytia hemisphaerica | exon |
| TCONS_00046980-exon-scaffold_119-1491911889:74254..76327 | TCONS_00046980-exon-scaffold_119-1491911889:74254..76327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_119 | supercontig | scaffold_119:74254..78519 - |
Blast
The following BLAST results are available for this feature:
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