TCONS_00047017 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047017
Unique Name	TCONS_00047017
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2243

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_120:80348..97224-
coding sequence from alignment at scaffold_120:80348..97224-

transcript sequence

>TCONS_00047017 ID=TCONS_00047017|Name=TCONS_00047017|organism=Clytia hemisphaerica|type=transcript|length=2243bp
CACTGGCAAAGCAAAACAGTTCTCAAAGAAATAATTAGTAAGGTATGGAt
gttacaaaaaataatttcaaagagGCATATTGTATGTTGGAAAAGTCTTT
GCCCAATGCTGACTTTGTATCAATAGATGCTGAATTTTCAGGTCTGAGTA
CAATCAAAGGACCTCGTTACAGCTATAACACACTCGAAGAGAATTATTTG
AAGACTAAAAAAGGCTCAGAACATTTTCTTATACTGCAGTATGGAATTTG
TCTTTTTACTTGGAATGAAGAAAATAACAGATACACTGCTTTCCCATTCA
CCTTCAATGTCTACCCCAGACCCTATAAACGCTACTTTAATGATGTAATG
TTTATGGTTCAAAGCTCTTGTTTAGACTTTttatctcaaaataattttga
ctTCAATAAATTGTTTTATGAAGCTATATCATTTGTCCATCCGTCCACTG
AGAAAAAAGTGAAAGATAAGTATGACAATGCAACTAAGATCATTAACAAG
AAAGATAGCAGAGCCTCTGCTAATGAAGAAAAACCAGCCATCCAGGCAGT
ACCAAAAGAAGAAAGCAAAGTGTTTATTCCTAAAGATAAACGAGAATTTA
TGGGGAAAATTATAACAATGGTTGAAGAGTTTGTTGTAGATTGTGCTAAG
TCATCACTTGATCTTCCAACTTGCAACCCTTTTGAGAGGAAGCTGATCTA
CGAAATTTTAGAAGAAAGATATCCCATGGGTCTGTATTTGCAAAGtgaaa
tgaatgaaaagaaagaaaagtatGTCAGAGTTGTGAAGATTactgaaaaa
gggaaatccaTGAAGTTCCAAGAAGGTTTACTACAAGAAAGTGAATTCTA
TAACCAAACCAATGCATTCAATTTGGTAATGAAACTGTTGGTTCAAGCAC
AAAAACCAATTATAGGGCACAATATGTATCTAGATATGTTTTACACTTGT
GCAAACTTTCTTGCATCGCCACCTGACTGTCTCAGCGAGTATAAACTGTT
ACTGAATGGGCTTTTTCCTGTCATTTTTGATACTAAAGTTATTTCAAGTA
CAAGTCCTCTATCAGGTATGTTGACCAAGGGAACAGGATTGAAGAACTTA
ACTGAAAGTATTGGAGTTGATTTGGTCCCTTGTGAGCTGGATTTTGATGA
ATATGTTGATGACAAAATCAACACAGAAGCTTCTTACCATGATGCTGGTT
TTGATGCACTGTCTACTGGAAAATGTTTCATCAGTCTCATCAAATCACTC
ATGCTTCATTTTGATAAAGGTGATGGACGTATTCAAATGGATGGAAATCT
CCTTAAACCGTTTCAAAATAGAATCTTTGTTATGGGTATTAATGATATTA
ATTATGTGACTGTTCACAAAGAAGATCAGATGCCATCAAGAAGGGGTATC
TATTTAGTTACATTCCCTCCAGAATGGAAAGAGACTGATTTGCACAATCT
ATTCTCACCTATCTGCAAAATCTTTGCAAATATTGTCTGGGTGAATGATA
CCTCAGCTTATGTATCTCTACAAGATAAAACCAAGCATGAACAAGTCATT
GAACagtatgtaaaaaataaaaaacattcaaacattttccagaTCATACC
TTTCCCAGAACAAAATAATGGAACTGAGGATGATACAAATGAGACAGCTG
CCCCCGAAACATCATCAACCAAACGAAAACTGATATCTTACCAGGAAAGT
GACCCTGAAGATGGAGAGATTTCAAGTGATGATGAAGAAGATTCCAAAAG
TCCAAAGAATTCGAATTTGACGAAAAAGTCCGAACAAGAACCTAAAGCTA
AAAAACAAGCTATGTTTAATGTCTCAGAGGACTGGTAAAGTCTGGCAGAC
TTTTGATAATGAgggtttttacatgaatctCATAACTCTATAAATATGTG
AGAATTATTAGTATTTTTGTTTACTCTATTGTCTTGTAATTAGAAAAGTT
ATAGCTAATCCACATTCAGTGATTTAGCCTTGGTGCAACTGGTTGTTAAA
AGAGTGAATTATTTCAACCAattgatcaattttttgaaaaattcacaTAT
GGTTCATTTATTTTCTAGTGGgtagaataatttttttggataGAGGAAGT
CAAGGAAggatttttcagtttttgtggttgtaagatttttCTTCACTGTC
TCTTTATAATAAGATTAActttcatgtttttcttttgttttgacttaTGC
TGgtctttttttgaatatattctTGCACTAGATCTTTTGTTTC

Run BLAST on NCBI

protein sequence of TCONS_00047017-protein

>TCONS_00047017-protein ID=TCONS_00047017-protein|Name=TCONS_00047017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp
MDVTKNNFKEAYCMLEKSLPNADFVSIDAEFSGLSTIKGPRYSYNTLEEN
YLKTKKGSEHFLILQYGICLFTWNEENNRYTAFPFTFNVYPRPYKRYFND
VMFMVQSSCLDFLSQNNFDFNKLFYEAISFVHPSTEKKVKDKYDNATKII
NKKDSRASANEEKPAIQAVPKEESKVFIPKDKREFMGKIITMVEEFVVDC
AKSSLDLPTCNPFERKLIYEILEERYPMGLYLQSEMNEKKEKYVRVVKIT
EKGKSMKFQEGLLQESEFYNQTNAFNLVMKLLVQAQKPIIGHNMYLDMFY
TCANFLASPPDCLSEYKLLLNGLFPVIFDTKVISSTSPLSGMLTKGTGLK
NLTESIGVDLVPCELDFDEYVDDKINTEASYHDAGFDALSTGKCFISLIK
SLMLHFDKGDGRIQMDGNLLKPFQNRIFVMGINDINYVTVHKEDQMPSRR
GIYLVTFPPEWKETDLHNLFSPICKIFANIVWVNDTSAYVSLQDKTKHEQ
VIEQYVKNKKHSNIFQIIPFPEQNNGTEDDTNETAAPETSSTKRKLISYQ
ESDPEDGEISSDDEEDSKSPKNSNLTKKSEQEPKAKKQAMFNVSEDW

Run BLAST on NCBI

transcript from alignment at scaffold_120:80348..97224-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047017 ID=TCONS_00047017|Name=TCONS_00047017|organism=Clytia hemisphaerica|type=transcript|length=16877bp|location=Sequence derived from alignment at scaffold_120:80348..97224- (Clytia hemisphaerica)
CACTGGCAAAGCAAAACAGTTCTCAAAGAAGTGGGTATATTTTTATAAAC
TAGTAGCCTAGCTGAGATGAGTATATTTTTCAGTGTTTGGTGAAAACAGG
ACCATACCACAGGTAGGTTGGACAGGCCAAAATTTTCCCCTCAATTTTTA
GAAACCAAACTAATTTTATTTGAAAGTCCTTACCTTTGTGAGAAAAATGA
GGGGTCATTTATTAGAATTGGTTAAGTATTCCCAAAGTTATTCCATTTTC
AAAACACAAAAAAATCACTTTTTCAAAGAATCGCCTCCTTACACCACGCC
AGCAAGAAATAATTTTCGGAAGCACCAAAATGGTGCGGTCTGAAAATCAG
CCCGATGACTGTTAAACTTTAGCTTATCGCTAATGAGCTGGAAATGATAG
CTAAAAACAAATTTCACCACTAGAAAGCTGAAATCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTGACCAAATGATCTATCACACAAGA
AAATAAGACCCTGAAAATTTCACCTTGATATCTCACTTAGTTTTGAAGAT
ACAGCGTCTCAAAGATAGGCTACTATGCGAAAATTGACCTCTAAATTTCA
TGAACTCTGGTGAGGAGCAGATTTTGAAAGCCAATGAATTTTTATTCAAG
TACATTAGAAAGCTAATTTATATACAGTGGATACAGAGGGCTTCAGACTG
CGTAATCTGGGTTTCAAAGCACTTTTAGCTGGCTGCTGATAGTCCTTGAG
ACTTTTTTAAAGCAAACTTTTGACCTGGAGTGGTTTACTGGTGGGTTTTG
GCCACAAAAACAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTTTTGAAACTTTCAGCAAGGCTTCCTTCATAGGTCTAGT
TTATAGCCTCAAAAAATCTCAGTGGGTTTTTGAAGTCTCTTGAAGATATG
ATCGATTGAAAATTTGCTTAACTTCGTTGTTTTTTCACTCTTAAAATGCT
AAATCAGGCCCACTTAAGGGCTTTAAAGGTAAATTTTTGTCAAAATATTG
GTTGATCTTCTCTAGCCAACTAATCATTGACATTAAGGGAACAACTGTAA
AAGATTTCAGGTCATTTCCATCAACAGATGACATTTTATGACTGTTTCTT
TATTTTTAAGTACAGAATATGTAAAAAAATNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATTCTTAAATAACTAAGCAACATTACTAGGGTGATATTTTAT
GAGATACTGCAAACAATGATGTTTAAATCTTCTGGACAAGAAATATTGGA
CAGTCTAAAGCTAATTAACGACACTTGGACTTAGAAATTTTGAGGAGTCA
CCAGAGTTCATGAAATTTAGGGGCCAATTTTCGCTTAGTAGCCTTTCTTT
GAGACGCTGTATCTTCAAAACTATGTGAGATATCAAGGTGAAATTTTCAG
GGTCTTATTTTCTTGTGTGATAGATCATTTGGTCAAAATTTCATCAAAAT
CCAAGAGGATGAGGTATCACACCCTGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCGTGTCCACAGTGTTATATACCGCTGG
AAAGCTAAGATCAAGGGCTTTCATTTAGTAAAAACCGGAACGCTTTAGCA
TACATAGAAAAAAAAGTTCAAAGGGTTCAAAGTTCACGGAAGAATGAAAC
ATTTGGTTTGACGTCAACGAAAGTTGCATGACTTCTGGAGTCGCTACACA
GGGGCGGATCTTATCTAGGAACGACCCACGGCATAGCCCGAACATGTTTG
GGCCTGTTCGGACCATGCTCGGGCAGTTACATCAAAATGCCTCGAAAATG
TGCATATGAAAATTGCGTAATCAGAGAACGTATGTCTCGCTCATTATAAA
AAGGCTGAGACAAACTTTCAATAATTGGATTGTAACATCGAGTCTAGTCT
CTTTTGTTAAGTCACCAGGGGGTAAATAAAACAAACCTTGATACATTTAT
CGTTCGTTTCAACTTGACGATTCGTTTAGAACTCAGCCTCCTAAATATTT
GGGGTAGGTAAAATATGTACAAAGAAATTCATACTTTTCCAACCCGGCGA
ATCTTTAAAAAAGAAGCGAACAATGAAATATAATTACCCTTTCCAAATAA
ACCTCTTCGGTGCTGAGCGTAGTCTACTCTGACGTTATTGTAAAATTTAT
GTGATGGGAGTTTGACATATGCTTGTACTCTCTGTGTATACATTCGTTGT
ATTGTAATGTTGTTTGGGGAATTATGATGTTCTCTGGAATTTCAATTGCA
TTTATTCAGGTTGATTTTTTATGACTTCTAATGGTACTTTTTCTATTGAG
TTTGATTACTCTGTTCTCACACTTATGTCTTTTTTTTTCGCGTCCTTTTC
CGTGATTACTTTTACTTATATTTTTCAAGACAGGTAAGAAGGCATATTGA
TGTAACTGTCGGGCCACAAAAAAGTATTATTGAATCGGCCCGAACATTTT
GTTCAGACCATGTTCGGGCCATGTATTTACAATTGATACGGATTTGCTCG
GGCCATGTTACCTTTCCTGGTTTATCATCATCCATTGTTAAATATTTTCA
TTAGACAAATTCAAAGTTCCAAATGTACCAGTTTGATTCACAAAGTTGTA
TAAGAGTACAAAAAACGATCCAGAAAAATTCTGCTTCGAAGGGGTGCATG
TCACTAGTCCGACACTTTCTAGTCCGACAGTAAAATAGTCCGAATCTATA
AAATAAATTTAAAATTTGGAAGTCTTTTTTTCCGACGTCACTTTTGTCCG
AAAACAAAAGATTTTTGAGTGTGAAATGTTGAATAAGGGTTTTTCACTGA
GATAATATTAATAAAAGTTGATTTTGGCGGAATTTTGATATAACTAGAAA
TAAAGGAACAATCAGGGTTGCAAATCACTAAAGAAGAGTCGTAAAAACAG
CTAAATCCAATTTCTTGACTCTTGAAAGCCTAATCCTAACAAGCTTACCA
AAATTTAAGAAAAGTCAGGTTTAGGGGCCTAACCTCAAAATCGGAACTTT
AGATTTTTATAAAAAAATGTGCCTCCTCTTCCGCGATTCATATTACCTTT
TTTATATGTTTTTTTTTTACTCGTTGTCGGACAAAATTGTTGTCGGAATA
CTGACGCATTCGTCAAACCCAACGTCGGACATTTATACTGTCGGACTAGA
AAGTGTCGGACTACTGACAACCTCCCAGGAGAAGACCACGAGAAAAGGGA
ACGGGATAAAGAATAAAAAGAAGACCATATTATGTAAGATTCAAATCATT
CTTTTTAATAATTTTCCTAACTTAATTGGAAAATAGATGATTAACTTTTA
TATTTGAACAATATATATTTGAATAAAGATGAAGATTTTTAAATTTGTTT
GCTAAAGTAAGGAATTTAAAATATAAATATTGGGTCCTGAAATGACACGC
GCGATCGTAGCAAGTTTTCGAAAATCATTTTTGAAAACTTGCTACGATGA
AAATCTGGCCCGAACATGTTCCGAAACTGTGCGGTCCATTTTTAAAAAGT
ATTAATCAAGAGGCCCGAACATGTTCGGGCCATGCCGTGGGTTGTATCTA
GGATTTGGAGGGTACCATGCAAAAGAGCAAAACAAAGCCATAATTAGAAA
TAGAAATTCTTGTTGATACAAAAAAATATTGTATCTGTTTTGAAATTTAT
TTTGCAATCTCGAATTCCAAGAGTTCCATAAAAAATGTCATTTGACTGTA
AATCCCATGTTGTAATTTGATCAGTCCAAAGGCTCAATCTCGCTGCCTTA
GTCCACAGTGGGGCTGAATTGTATGCAAAGTTCTATGATTACGCAAATGA
ATATAATTAATACACATCCAAATTTAAAACTAGCCACGTCAACCAGAACA
GAGCCAAGTTTCTGAGCAGTCAGTATGCTAGATGATGTGGAACATTCATA
CTGTGATTGACTGGAATAATCTTGAGGGTCACATTGTTTGTATATGTAAT
TTTTTATGAATTTCAGAATTTAGTTCTACAAAAAAGAAGAATCCATTTTA
GCATTAATTTTCAAGCCAGCACATAAATGATGTTTTCTGCAACCACATCC
TTGTAGCATGACCTTTGATGTGTTTGTGTTTGGATTTTCAAGAGAAGGGA
AAGTCATGACTCTTGACTCTCCACCTGCTAACCAACTTGATCCATTTTGA
AATACTGTACTTGAGTCAAACTGCACTGAGGTGACACTACTTTAGAAAAT
TGTTGTTTCTTAAAATTCTAACGGTAATTTATATCAATAAGATCTCATAA
AACTAGAACAAGTTTAGTCAATGCTGACAAAATAGCACAAGCTTCAACGC
ACCATATAGGATTCAAACTCTTGAAAATTACAACCTTCAGCTGTTAGTTC
ACCGCCTTATCCACTCGGCCACACAAATGTGGAAAAGTAGAACAATCATT
AATCAAACCCAGGGTTTGAATTGTAAATTTTTGGAGCTTCGCAATTTTTC
CGTGGGAAGCAAGGTAATTGAAAGGAGCGCCGCAGGCGGAATTTTTTTTA
CTGTTTGCGAAGCATTTTGAGTATTTTGTGATGTTGTTTGGAAGAAAATG
CGGAAGTATCTTCAATGCATTTCTCTAGAAAAGCAAAGTAAGACTTAGAC
TGTTGTGCGAGATTGTAGACAAAGCAAAGTAGCGAGTTGATAAAGTAATA
GATAAACGAATGAATGAAGTTACGAGGTAGCGAGTTTATAAAGCAATGGA
TAAACAAACAAATAAAGTAGCGAAGTACTAGTTGATAAAGCAAAAGATAA
ACGAGTAAATAAAGTTGCGATTTTATAAAGCAATATCAACGAACAAATAA
AGTAGCGAAGTAGCAAGTTGATAAATCAATAAATAAACGAATGAATAAAG
TTGCGAAGTAACGAGTTTATAAAGCAATGAATAAACGAATGAATAAAGTT
GCGAAGTAACGAGTTTATAAAGCAATGAATAAACAAATGAATAAAGTAGC
AAAGTAACAAGGGGATAAAGCAATCGTTAACCAAGTGAATAAAGTAGCAA
GGTAGAGAGTTTATAAAGCAATAGACAAACAAATAAATGAAGTTTAGCAA
AATAGGTGTTTTCTTAAAAAATTTTTACTTCGCATTTTTGAGTTGAGAAA
TCTTTTTGGGTTGCTAAATCTAAAATTCACATCGCATTTTACGAAGTGCA
TTCGAAGTGCGAAGCTATAATTCGAACCCTGAAACCATACCTTTATTTGT
CATGACTTGTATAATTTTACCCTGTCAAGGTATTGACTTCTTAGAGATTT
TCAGGTCTCTTTAGTTGAAAAGTAACTCATATTCCAATTCAGTAAGGGGC
TGCAGGACTGCAGCAAACGGGCTGTAAACCCTGCTAGTGTCTATAAAATT
TTAAATTTCCATTTGAGGGGTTAGGACATTCTCCAATCTCCTTTAAAGAA
TCAAAAGACTGAAGAGAGGAGCTTGTTATTGTTGTTCTTGCATACAGTAC
CCATATACAGCAGGCAGAGCGTACACGCGCGGGTGATTAAATACAATCGC
GCGGGATGCGGGTAAAAAATTCCCGTGAGCAATCTCGTTAATTATCAAAA
AGTATGTTCCCTCATGCGCCGCCATCTTGAATTTAGAATTAGAACATAGA
AGCATGTCGGAAACTAGAACCGAGTTTATCTCACCCAATAAAAACGCACA
ATTCACAAAGGAAAACCACTTTCGTTTTCTCCGACCAATCAGAACGCGCA
ATATGAGTTACTTGAGGAAACCCAGGGCGAAAATGTTTTGATTGGTCTTG
GGAAAAAAATTATGCCATGGCGCAACAATTTGACCTCCGGAAAGTAGAAA
GTCGGGCTACTTTGTTCGATAATGATCAAAGTAATCGAACGACCACTTAT
CGATTAACAATCGAATGTCAAGTACCAAAATTTCAAAAAAATTGTAAGTA
TTCAATGACTTTCTTAACAACCCTTCGAAGACTCGATAACCGTTCGAGTA
CTTTATTGTTATTGATTACTTTCAATAACTTTGACAACTTCGATAACCAA
TTGATTACTTTGATAACCAATTACCGTCAACTGCTCTAACTTTGGACGAT
TGGTCAAAACATGGGACTGGTTGATATCTGGCCTGTATTTTCACTTACTG
TTAAATCTCTTTGACAACAAATTTTTTTTGATACTTCCACCAAGTTTATC
AACCACACTTTCTGTCAAACATGTCACGATAACTTTCACTGATAGCGCGC
CCTTTTTAACTTTTTGTTTTCATTCAAAATGACCGGACGCCGATTGAAGA
ATTAGAGGACGTCCGTGCCTAACCGCCTATCGCCCAATGGGATTAACAAA
TAACGAGTGTGTAACTTGTCGCGCGAGTGACGTCAAACGCTCCATCGTTT
TGCCACTAATTTGTTCTTCTTCGTTCCAGACACTCGCTTGTGTTCCACCA
CAGATTTTTTTCAGTTTTCGATTTAAAACCCTACTCAGTGCGAAAGAGAA
CTCGTGTATTTTTTAATTCGCAGTTCATTAACTCAAATCAAATAACTTTG
GAGGTTTGGTGAAATGGTGGAAGAATTGCCGTCCCATGTTTTATCAGATT
GTCCCAAGTTAGAGCAGTTGACGGTACCGTAACTTGGTCTAATTTTGACA
CCCCTCCTCTTAAAGCTCGTGGTCCACTTAGCTTTTTTTGTCGCCCAACA
ACGCGCACAGCTCCAGCGTTTTGGTCGCTGAGCGCTTTTATACTTCTATT
GAAAATTAGAAAAAATTTGCGCATAAGAGAAAATCAAAACAAAAACAATT
GTACATGATAAAAATAAACACTCAATCAGTATGTTTACCTTCTCGCTGAT
TGGCTACTTAAAAAAGAACAATAGAAGAGACACACAGCTTTGCGCACAAA
GTTGAAATTTTTCAACTTAAAAAAAAGCTCACGCCGTTCATTGCGACAAG
CCTTGAAGGCTTAATTTATTTAATTTATGCAATAATCGAGCCGTGCGCAT
TGTGTGCAGCGACCAAAAAAAGCTAAGTGGACCACAAGCTTAATAGATCT
TTTCGTCTTTCCATCCGCCATCTTGAGTTGTATGCAAAAATAGAGGAACA
AAAAAGCTGTGGTTGGATTTAGTTGGAAAATATGCAAAACATATGCAAGT
TTACACAAAGATTAAAAAGACAACAAAGCATCTTATAAATAAATATTATA
ATCATTAGAACAATAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCAACAAAAGCCTTTTAGAAATTTGTTCTTAAAGACATTGCATA
TTCTGTTTTCAAGCCATTAAAATTTCCACCAAGACGGAGTACACACATCA
AACTTTCAAAACACGCAAACTGAAGGCAGTAATTATGACGTCACACATTC
AGCGGTTTCAGATCAATGTTTTGATTTGATCGTTTGGCGGTTCTATTCCC
AGGAGAATAATTTACCGTCAGCCAAATAAGGATTTTTTTTTTTACCTTCG
CGGGTGATTTTTCAGCTTGAGTTTATGTCTAATTTTATGGTTTTTTGAAG
TGCTTGTTCTAAGAGATGAGCGAATTTGATTATTTCTAGTTTTCAAAAGA
AGCAAATTTAATCTTTCTTCTACAAGATTACTCTTTAAATATAATGCCAA
TTAGGCATGTAAGTTTTATATTAATACTTTCTTTTTGCATACTTTAATTG
TAGAAATTTTAGCGAGACTAATTTTAGCGTTTTAGCGAGTTTTCCCTATT
TTCGCTAAAATAAATCTTGCTAAAACACACTGAATCGCCAGATTGCTAAA
ATTTATCCGCTCGAAATTTCTGGTTATATTGCCTTGATACATTTTTATCA
ATAGGAAAGGTTTCAGTGCAAAGAAATGCTAAAAAACGAATTCAATCAAT
AATGTAATACGAGTATTCGCTGAAATTTATCCACGCGAAATTTTTTGAAA
TCATGATTTGCTAAAATAAATCCAAAAAAAATCAAGATTTTCCTGACTAG
CTAATATACGCTAAAATTAGTCTCGCTAAAATTTCTACGATTTTATGTTT
TGCATACTTTCTAAGGGAATTTCACCACGGCAATTCGGCCACCATAATTT
TTGCATACAATTCAATATGGCAGATGGAAAGGCAAAAAGGTCTATTTCGA
CACCCTTTTTATCAGCTGAAATTAATAGAAAGGTTGAAACGATTCCTGTC
TTTAAAGAAGGGTGTCGGAATTAGATGAGGGGTGTCGATATTAGACCAAC
TTGCGGTACTATGATATATCTTTAGGAAAAGCCAAAAAAAATGACCTAAA
ACCAAAGCACAAAAAGAAGCATCGTCATAAAGAAAAACCATCTTATTTCC
CAGCCATTTTCCCCGCCATTTTGTGTGCCTTTGTCCTGGGTTTCCTCAAG
AACTCATATCGCGCATTCTGATTGGTCAGGGGAAACGAAAGTGGTTTTTG
AGCATGAATCGCATGTTTTAATTGGCTGAAATAAACTTGCTTTCAGATTA
TTTTGACGCGCTGCTACTGGAAACATATTTGATAATCGAAGGCTGGAAGA
TATACTCAATACAATCGAAGGTATTCAATATGATAGAAGGTAATCGAAAA
GTAATCGAAATGATTGAACAAATCGAAAATGGTTGAAGAAAATGCCATAA
TCTGGAGTCGAGTGAGTATTTGATCACTGATAAAATCGATAGGTGGTCAC
TGACCACCTTCGATTATTATCGATCATTATTGATTACTTCGATCACAATC
GAACGTTCAATTAGTACCGTCTGGGATAGAGGAAATAAGTTTTTACCAAT
AACGCAATGTCTAAACTTTTCACTATATCTAAAGAATTAGTAAAACTTTT
TAAGATCTGTCAGTTACCCTAACTTGGTCTAATGTCGACATCCCTCATTC
ATCTAATTATTTAGTTCCGACACCCTTTTTATCACCTGAAATTGAAAGGT
CTAAGCTATTTTTCTTTGATTTAGTGTCAGAAGGGGGAAATATCCTGTGA
TTCAAACTTTTTGTATTATTCCTGTCTCTAAAGAATGGTGTCAGAATTAG
AAAAGGGATGTTGATATAGTTGTTTTGGAGAACATGACGGCCTATTGAAT
AACTAATTAGGGTTTTTATGGATTTGGTACTGTGGCAGAAAGTATCAGTC
AGAGCTAAGTCACTTTTTGATGTTTTATTTTGTCTTTGAAATATTAGCTC
AAATCTGTGATGGACGGGACGTCCCGTTCGTCACGCATATATGGCTGTCT
TCCTAAAACTCAATTTTAAATTTGTCTTTCTAAATTCTTGCCAAATTTAT
GTAAAAATGTTACTCTATAATGGAATTGTATATGATTTGAAAATTACAAG
CCATTTTCTTGAACCAAACTTTAGTTATAACTGAAAATGTGTGACTGACA
GGACACAATTTTGTTGTTGTCTACACTAAAAAGCTCTTTAACAGAGTGAC
CCAATTTAATTTAATCGCAATCAAACTCATCGAACATAATGATAATCGAA
CAAAATCTAAGATTCATCAAATGTAATTGACAATCAATCGAACCAATCCA
ACATAGTCAACTATCAATCTAACCAATCTAACCTTACTCGAACGCAATCG
CACACAATCGAATTTTACCCAGGAATCGGCCGTTCGATTGAGATTCAATT
ACATTCGACAATCAAATTGCAATCATTCTATCGCGTTCGATTACGTTAGA
TTGCAATTTTTTTTCAAAGTTTTTCAATTGACACCATCTGGACATTTTCA
AAAACTGTGTAATTACCTGAATTTTGAGCCATTACAGTAATGAAAAAATT
TGAACCGAGCCGACCTTATCGTTATTGGCTCAATTCAATTCTAATTGCAC
TTTTTTGATTTGACAAAATGAAACAATTCAAACATTTTCCAGGGGGTAAT
TTTTTTGTTTTTCTTCTATTTCTTCATTTTTTGCCAATCCAGGGGGTCTT
CATTTATACATCATCTGGAAAGCTCATAAAGTTTGTAACTAAATTCTGTG
TTTAAAAAACCCCAAAGACTGGGGAACAATCATTTTTGCCAGCATATGGT
TTTTCTCTTTGGTCTCTTAATGGTCCATTTTGAATGAAAACACATGAGTT
TTGCTAAACTGTAGGGAGGTTGAAGCTCGCAAGTGAGATCAGTAATGTTG
AACGTAAAGCCGACCAAAAATGTTAAAAAGACAATAGAAAATTGCCAAGC
TGTCGATCCTGAAGTTTTATAAATTCTAGGGCTACGTGTGATAGTAAATG
ATGAACAGGATTTTTGAAAAAATAAGAGATATGCTGAATGGGCCTACCTG
AAACATGTTGAAAGGAAAATGTTTGAAGGAAAAAAGAAAGATAACAGCAT
AGCATAGAGATGCGTAAGCTTGAAAACATGTACTTGTTTCACACTGGCTT
TTCGATGTTTTAAGGAGCCCAATATAAAATGTTCTTTTGGAAAGCAAACC
ATGCTAAGTTTTGGGCATAAACAAAATCCTGTAAAGATTACTCTATCTCT
TTAAAGATAAAATCTAATGAAGCAACTCCACAAATCCAAAATTTGTCTAA
TTTCTTTTTTGAAAGTCTTACATTTTAAGAATAACTATTTTAAATCACTG
TGTAAAAAAGCAGGAAAAAAAATAAATGAAGCAATTTCACACTAAATCCA
AAAAAAAACATTTTTAGGCAAAAAATTTTTTTTTTTTGAAAACCAGACTC
CATCAGATTTAAAAAAATACCATTTTACATCATTCAGTAAAAAATTAGAA
AAAAAAACCAAGGTTATCGTGAGAAATGATCATTTTCCCTAAAGAGGATA
ACAGGAAATTTCCCCGAATATTTTAAGGAAAAATGATTTTTACAGGGAAA
AGAAATTTTCCAAAAAAACGACACTTTACACTTAGGCACTTTTTGACCCA
AATTTGCCCAAAAAAATATTTTTTTGAAAATCAGGCTGTATCACTTTTTG
GGTTCTGTGCTTTTGCATCATTATGAAAAAACTAATAGGCCAATCCTGAG
AAAAGCTGGTAACAGACAAACGAACAAACAAGCATATGTTAATTTTAAAG
GACCTCTGAGATCAGAGTATTTTCAGGGTTTATCTAGAACTACTTAGGAG
AAGAGAGTATTTTACAGACAGTTAGACACTCTAGGAAATCCAGCTTTCAG
AAAAAACAATAATTATCAGTCATCTACAGGATGAAACAGGGAAACCTTTT
TTTCGAAAATCAGGAAATAAGTAGGGGGAAACTTTTCTTAAAAATCGAAC
ATGCATGAGAAATCAAATAGTGCGAGACAAAGTGGAAATATACGAGTCTC
ACCCTCATTTGGAAATGCATGAGTCTTACACTCACTGCTTGAGAAATGGC
ACCTCTGTGTGTTTTGATTTAGCTATATATTAATTTTGTCTCTCTTGAAA
ATCAGAAATGATAGACCTTTTGACAATTCCATCCATTTTCTTGGATTAAT
AATAAAAATAAATTAGGTTTGGAAAATATTATGTTGCCGCAAATATAAAA
CTACTTGGAAAATGTTATGTTGCCGCAAATATAAAACTACTGACTGTGAT
TATAATAACACTAAATTGAACCAAATTATTAACTGATTTTCACTGAGTGT
TTCAATTGTAGCAGATTACATATCAATGAAAGTTAATTCAGAGTGCAAAA
TATAACTGCAGAAGTTTTTTGAAGTCCGAACAGTTTCCAACTTATCTTAT
TTTGCCTACTCTCTTCCTTTCTAGAAAATAAAAAAGGAGGGTCCATTGAA
AAGATGAGATTGACTTCATATTAAAATTTGTGTATGATTCTCTTTCATAA
TTATTTTAAATAGATTTGCCACCATTCAAATTCATTATCATATCATCCAT
CTTTTAATTTACAGATAATTAGTAAGGTATGGATGTTACAAAAAATAATT
TCAAAGAGGCATATTGTATGTTGGAAAAGTCTTTGCCCAATGCTGACTTT
GTATCAATAGATGCTGAATTTTCAGGTCTGAGTACAATCAAAGGACCTCG
TTACAGCTATAACACACTCGAAGAGAATTATTTGAAGACTAAAAAAGGCT
CAGAACATTTTCTTATACTGCAGTATGGAATTTGTCTTTTTACTTGGAAT
GAAGAAAATAACAGATACACTGCTTTCCCATTCACCTTCAATGTCTACCC
CAGACCCTATAAACGCTACTTTAATGATGTAATGTTTATGGTTCAAAGCT
CTTGTTTAGACTTTTTATCTCAAAATAATTTTGACTTCAATAAATTGTTT
TATGAAGCTATATCATTTGTCCATCCGTCCACTGAGAAAAAAGTGAAAGA
TAAGTATGACAATGCAACTAAGATCATTAACAAGAAAGATAGCAGAGCCT
CTGCTAATGAAGAAAAACCAGCCATCCAGGCAGTACCAAAAGAAGAAAGC
AAAGTGTTTATTCCTAAAGATAAACGAGAATTTATGGGGAAAATTATAAC
AATGGTTGAAGAGTTTGTTGTAGATTGTGCTAAGTCATCACTTGATCTTC
CAACTTGCAACCCTTTTGAGAGGAAGCTGATCTACGAAATTTTAGAAGAA
AGATATCCCATGGGTCTGTATTTGCAAAGTGAAATGAATGAAAAGAAAGA
AAAGTATGTCAGAGTTGTGAAGATTACTGAAAAAGGGAAATCCATGAAGT
TCCAAGAAGGTTTACTACAAGAAAGTGAATTCTATAACCAAACCAATGCA
TTCAATTTGGTAATGAAACTGTTGGTTCAAGCACAAAAACCAATTATAGG
GCACAATATGTATCTAGATATGTTTTACACTTGTGCAAACTTTCTTGCAT
CGCCACCTGACTGTCTCAGCGAGTATAAACTGTTACTGAATGGGCTTTTT
CCTGTCATTTTTGATACTAAAGTTATTTCAAGTACAAGTCCTCTATCAGG
TATGTTGACCAAGGGAACAGGATTGAAGAACTTAACTGAAAGTATTGGAG
TTGATTTGGTCCCTTGTGAGCTGGATTTTGATGAATATGTTGATGACAAA
ATCAACACAGAAGCTTCTTACCATGATGCTGGTTTTGATGCACTGTCTAC
TGGAAAATGTTTCATCAGTCTCATCAAATCACTCATGCTTCATTTTGATA
AAGGTGATGGACGTATTCAAATGGATGGAAATCTCCTTAAACCGTTTCAA
AATAGAATCTTTGTTATGGGTATTAATGATATTAATTATGTGACTGTTCA
CAAAGAAGATCAGATGCCATCAAGAAGGGGTATCTATTTAGTTACATTCC
CTCCAGAATGGAAAGAGACTGATTTGCACAATCTATTCTCACCTATCTGC
AAAATCTTTGCAAATATTGTCTGGGTGAATGATACCTCAGCTTATGTATC
TCTACAAGATAAAACCAAGCATGAACAAGTCATTGAACAGTATGTAAAAA
ATAAAAAACATTCAAACATTTTCCAGATCATACCTTTCCCAGAACAAAAT
AATGGAACTGAGGATGATACAAATGAGACAGCTGCCCCCGAAACATCATC
AACCAAACGAAAACTGATATCTTACCAGGAAAGTGACCCTGAAGATGGAG
AGATTTCAAGTGATGATGAAGAAGATTCCAAAAGTCCAAAGAATTCGAAT
TTGACGAAAAAGTCCGAACAAGAACCTAAAGCTAAAAAACAAGCTATGTT
TAATGTCTCAGAGGACTGGTAAAGTCTGGCAGACTTTTGATAATGAGGGT
TTTTACATGAATCTCATAACTCTATAAATATGTGAGAATTATTAGTATTT
TTGTTTACTCTATTGTCTTGTAATTAGAAAAGTTATAGCTAATCCACATT
CAGTGATTTAGCCTTGGTGCAACTGGTTGTTAAAAGAGTGAATTATTTCA
ACCAATTGATCAATTTTTTGAAAAATTCACATATGGTTCATTTATTTTCT
AGTGGGTAGAATAATTTTTTTGGATAGAGGAAGTCAAGGAAGGATTTTTC
AGTTTTTGTGGTTGTAAGATTTTTCTTCACTGTCTCTTTATAATAAGATT
AACTTTCATGTTTTTCTTTTGTTTTGACTTATGCTGGTCTTTTTTTGAAT
ATATTCTTGCACTAGATCTTTTGTTTC

Coding sequence (CDS) from alignment at scaffold_120:80348..97224-

>TCONS_00047017 ID=TCONS_00047017|Name=TCONS_00047017|organism=Clytia hemisphaerica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_120:80348..97224- (Clytia hemisphaerica)
ATGGATGTTACAAAAAATAATTTCAAAGAGGCATATTGTATGTTGGAAAA
GTCTTTGCCCAATGCTGACTTTGTATCAATAGATGCTGAATTTTCAGGTC
TGAGTACAATCAAAGGACCTCGTTACAGCTATAACACACTCGAAGAGAAT
TATTTGAAGACTAAAAAAGGCTCAGAACATTTTCTTATACTGCAGTATGG
AATTTGTCTTTTTACTTGGAATGAAGAAAATAACAGATACACTGCTTTCC
CATTCACCTTCAATGTCTACCCCAGACCCTATAAACGCTACTTTAATGAT
GTAATGTTTATGGTTCAAAGCTCTTGTTTAGACTTTTTATCTCAAAATAA
TTTTGACTTCAATAAATTGTTTTATGAAGCTATATCATTTGTCCATCCGT
CCACTGAGAAAAAAGTGAAAGATAAGTATGACAATGCAACTAAGATCATT
AACAAGAAAGATAGCAGAGCCTCTGCTAATGAAGAAAAACCAGCCATCCA
GGCAGTACCAAAAGAAGAAAGCAAAGTGTTTATTCCTAAAGATAAACGAG
AATTTATGGGGAAAATTATAACAATGGTTGAAGAGTTTGTTGTAGATTGT
GCTAAGTCATCACTTGATCTTCCAACTTGCAACCCTTTTGAGAGGAAGCT
GATCTACGAAATTTTAGAAGAAAGATATCCCATGGGTCTGTATTTGCAAA
GTGAAATGAATGAAAAGAAAGAAAAGTATGTCAGAGTTGTGAAGATTACT
GAAAAAGGGAAATCCATGAAGTTCCAAGAAGGTTTACTACAAGAAAGTGA
ATTCTATAACCAAACCAATGCATTCAATTTGGTAATGAAACTGTTGGTTC
AAGCACAAAAACCAATTATAGGGCACAATATGTATCTAGATATGTTTTAC
ACTTGTGCAAACTTTCTTGCATCGCCACCTGACTGTCTCAGCGAGTATAA
ACTGTTACTGAATGGGCTTTTTCCTGTCATTTTTGATACTAAAGTTATTT
CAAGTACAAGTCCTCTATCAGGTATGTTGACCAAGGGAACAGGATTGAAG
AACTTAACTGAAAGTATTGGAGTTGATTTGGTCCCTTGTGAGCTGGATTT
TGATGAATATGTTGATGACAAAATCAACACAGAAGCTTCTTACCATGATG
CTGGTTTTGATGCACTGTCTACTGGAAAATGTTTCATCAGTCTCATCAAA
TCACTCATGCTTCATTTTGATAAAGGTGATGGACGTATTCAAATGGATGG
AAATCTCCTTAAACCGTTTCAAAATAGAATCTTTGTTATGGGTATTAATG
ATATTAATTATGTGACTGTTCACAAAGAAGATCAGATGCCATCAAGAAGG
GGTATCTATTTAGTTACATTCCCTCCAGAATGGAAAGAGACTGATTTGCA
CAATCTATTCTCACCTATCTGCAAAATCTTTGCAAATATTGTCTGGGTGA
ATGATACCTCAGCTTATGTATCTCTACAAGATAAAACCAAGCATGAACAA
GTCATTGAACAGTATGTAAAAAATAAAAAACATTCAAACATTTTCCAGAT
CATACCTTTCCCAGAACAAAATAATGGAACTGAGGATGATACAAATGAGA
CAGCTGCCCCCGAAACATCATCAACCAAACGAAAACTGATATCTTACCAG
GAAAGTGACCCTGAAGATGGAGAGATTTCAAGTGATGATGAAGAAGATTC
CAAAAGTCCAAAGAATTCGAATTTGACGAAAAAGTCCGAACAAGAACCTA
AAGCTAAAAAACAAGCTATGTTTAATGTCTCAGAGGACTGGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029998	XLOC_029998	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00047017-protein	TCONS_00047017-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00047017-exon-scaffold_120-1575043694:97195..97224	TCONS_00047017-exon-scaffold_120-1575043694:97195..97224	Clytia hemisphaerica	exon
TCONS_00047017-exon-scaffold_120-1575043694:80348..82560	TCONS_00047017-exon-scaffold_120-1575043694:80348..82560	Clytia hemisphaerica	exon
TCONS_00047017-exon-scaffold_120-1510915933:97195..97224	TCONS_00047017-exon-scaffold_120-1510915933:97195..97224	Clytia hemisphaerica	exon
TCONS_00047017-exon-scaffold_120-1510915933:80348..82560	TCONS_00047017-exon-scaffold_120-1510915933:80348..82560	Clytia hemisphaerica	exon
TCONS_00047017-exon-scaffold_120-1491911889:97195..97224	TCONS_00047017-exon-scaffold_120-1491911889:97195..97224	Clytia hemisphaerica	exon
TCONS_00047017-exon-scaffold_120-1491911889:80348..82560	TCONS_00047017-exon-scaffold_120-1491911889:80348..82560	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_120	supercontig	scaffold_120:80348..97224 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7561	11.8893	5.82599	4.61782	24.7922	18.1599	21.64	23.3872	12.1849	11.0148	10.4261	7.70175	9.33829	8.73414	9.5676	9.76794	11.012	12.3606	5.04332	4.17153	8.3984	7.82273	21.179	19.0911	13.7457	14.3402	6.05098	3.85424	12.6419	14.458

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006941	RNase_CAF1
IPR014789	PolyA-riboNase_RNA_binding
IPR012337	RNaseH-like_dom
IPR001374	R3H_dom
IPR000504	RRM_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0046872	metal ion binding
GO:0004535	poly(A)-specific ribonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006402	mRNA catabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0003723	RNA binding

Blast

[Close]

BLAST of TCONS_00047017 vs. Swiss-Prot (Human)
Match: PARN (Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.020e-91
Identity = 178/530 (33.58%), Postives = 293/530 (55.28%), Query Frame = 3

Query:   45 MDVTKNNFKEAYCMLEKSLPNADFVSIDAEFSGLSTIKGPRYS-----YNTLEENYLKTKKGSEHFLILQYGICLFTWNEENNRYTAFPFTFNVYPRPYKRYFNDVMFMVQSSCLDFLSQNNFDFNKLFYEAISFVHPSTEKKVKDKYDNATKIINKKDSRASANEEKPAIQAVPKEESK--VFIPKDKREFMGKIITMVEEFVVDCAKSSLDLPTCNPFERKLIYEILEERYPMGLYLQSEMNEKKEKYVRVVKITEKGKSMKFQEGLLQESEFYNQTNAFNLVMKLLVQAQKPIIGHNMYLDMFYTCANFLASPPDCLSEYKLLLNGLFPVIFDTKVISSTSPLSGMLTKGTGLKNLTESIG-VDLVPCELDFDEYVDDKINTEASYHDAGFDALSTGKCFISLIKSLMLHFDKGDGRIQMDGNLLKPFQNRIFVMGINDINYVTVHKEDQMPSRRGIYLVTFPPEWKETDLHNLFSPICKIFANIVWVNDTSAYVSLQDKTKHEQVIEQYVKNKKHSNIFQIIPFPE 1610
            M++ ++NFK     + +++  ADF +ID EFSG+S   GP  S     ++T EE Y K KK S  FL+ Q+G+C F ++  +++Y    F F V+P+P+ R   DV F+ QSS +DFL+   FDFNK+F   I +++   E++++++YD         + R+ AN    A+  V    SK  V IP+D+++F+ +++  +E+ +      +LDL  C  F+RKLIY+ L  +YP G+++++   EKKE+Y+ + K+ E+ +  + Q+   +E E  N    F+ V+  +  + K +IGHNM LD+ +T   F    P  LSE+K +   +FP + DTK+++ST P   ++   T L  L + +      P +++  E            H+AG+DA  TG CFIS+   L          +     L++PF N++F+M + DI Y+ +   D  P R  +  VTFP EWK +DL+ LFS    I   I W++DTSA+VSL   ++ EQV +  V   K++  ++I  + E
Sbjct:    1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGIS--DGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYD---------EKRSQANGAG-ALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIIN-NTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNI--QISWIDDTSAFVSL---SQPEQV-KIAVNTSKYAESYRIQTYAE 511

The following BLAST results are available for this feature:

BLAST of TCONS_00047017 vs. Swiss-Prot (Human)

BLAST of TCONS_00047017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PARN	3.020e-91	33.58	Poly(A)-specific ribonuclease PARN OS=Homo sapiens...	[more]

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TCONS_00047017 (transcript) - C. hemisphaerica