TCONS_00047028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047028
Unique NameTCONS_00047028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047028 ID=TCONS_00047028|Name=TCONS_00047028|organism=Clytia hemisphaerica|type=transcript|length=2144bp
ACCCGAGCAACTGAAGGTGGATCATTGATTTGTGAATTGTGTGGCCGTTC
TTCATATAAACAATATTCAATTGAGGTAGAAGTTTCTGCTGATTCAACCA
CTGGTGGTAAACGATCAAACCAATGGAAAAGAGCAAGCACTGAGATAGCT
AAGATCTGTCGAAGTTGTTTTTTCGAGCAGAACAAAGATCAATCATCTAG
TAAGACTGGATCCAAAACTCGGACGCGTCCACAATTTCACCGTTCTGAAT
GTGGGATCACTACCGGTCGTGCTTCCAAAGCATGGCATTTTGTACGCCGT
GACCTAATCGTAAACAAAACTAAAGCTTTACTCAATAAACGATgctttga
aaatgaattttcagACCGCTTCTTGAATGAAGAAACTGAAGTTGAGGAAT
CTTGCGACTCGGACACAAGTTATGAGAGTGATTCAGGAAGCATTGACGTT
CTTCCTTTTCAATTAGCCAACACAGGTTGGGTGACACCGGGGTCGTTAGT
TCAAGTGAAACGCACTGATGCTCGGCAAGTCGTAGCGTCTCCCTCACCTT
TGCTAACAGAAGAGATTTCAGATGCTTTGTTGCAGACTGAGCTTGCAATG
ACTCGAGATATTTCTCCTCAACCAATCAAATCTCCTGAATTAATCAAATC
GCCCAGTGATACTTCGGCAGATGACACGATCCTGAATGCACTCATGGAAT
CTTTCGAAACACCATTGAGCATCGTAACCGTAGCGGAAGACACTGCAAAC
CCAGTGAAAACTCAACTAACAAACACTATAATCGAAGATGGACTATTAGA
TTATTTTACGGATCGACCTGCTCGTGTGCGACGCATCAAACGGAAGCGAA
GGCGGACCATATCAAGAAGCAGTGTTATTaagaagaaagtgaagaaaGAT
ACCTCGAAGCAATCAACTTATAACGGACTCTGCAAATTAGTTACCGTTTT
GAATCACACGAAAGGAAATTGCAGCAACACAGAAGAAATTTGCATCTGTA
GCGTACGATTGTGAGATTTGTCAACAAAACTTAGCAAGAAAATCATACAA
AAGTTATTCCAAAGAAACTGCACCACTTATTTATCTCAAGTTGTTCAAAG
GTAACAAAGACAAGCTTCGTATCTGTTCCAACTGCAACCTGAGAAAAATG
AACGAGAAATACAACAACGTACAATCGCGCAAACGACCTGCTGGACAGAA
CGAAAAAGAGCCACCTGCCCCAAAAGTTTCTAAACAAACACCAATACCAG
CAAAATCAAGTTCAAGCTCGTCGTCTATGAAAGGGCAAACGAAACAAGCC
TCCTCACAAGTATTCAAACTCAGTGACGCTGGTGCACAAGACATGAATGT
TACCATCGTTAAAAGTCCAGATGCAGAACAGATGAAAATGATTCAAAACA
GTAATGCTAAATACGTCATACTGAAAGCAACACCGACTGCTAATGGCAAC
ATCGTTACCGGTGATTTAGACCAAATATTAAGTGAAATCCGTATCCAAGG
AAAGAACTATAAGATTGATAAGGATTTCAAATTAAACGAACTTGTAAAAG
AGAATGAAAACGCTGGCACTGTGACTGCAAACTCTAAAGATCTTTTAGTG
AAACAACTCCCAAACATTCTCAAACGAACCATAGGCCAACGCAACGGTGG
TCCAACAACCTTTAAAATTGTCAACGTCATGCCTCCTGCTATGGTTGCTA
ACAACACGAACGTGCCCAAAGTActtccaaaaacaacaacacaGCAACAC
GTCACATCCTCTCTGCCATCTATTTCTCTACAAGTTCAAGAACAGATCCG
AACCTCTCTGGCTAATAGTAAGAAGCCGAGAACAAATTTAACCGGATTGA
CCAACTCGCTTCCAACAAACGGACCGGTCAAACCAATTCAAATGGTTAAC
CCGCCCAAAGTAACACTACCTGCTTTATCCGGTAAGAAACGGCCAATGCC
TAATACTAACCAATCTGTTACACAGATTCAAAGACAAAAGATTGTTTCCT
CAACAAAAACTTCAAGCAAAGGAGattctaaaaaatgaaaaatgtatttt
gtaAAGTATTTAATTATGATTTTAAAGAGTATTTTAATGGtcttttatta
aaaaaggtttaatatacAGTGTGCCCGGAAAAAATATCATACTG
Run BLAST on NCBI

transcript from alignment at scaffold_120:201575..208391-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047028 ID=TCONS_00047028|Name=TCONS_00047028|organism=Clytia hemisphaerica|type=transcript|length=6817bp|location=Sequence derived from alignment at scaffold_120:201575..208391- (Clytia hemisphaerica)
ACCCGAGCAACTGAAGGTGGATCATTGATTTGTGAATTGTGTGGCCGTTC
TTCATATAAACAATATTCAATTGAGGTAGAAGTTTCTGCTGATTCAACCA
CTGGTGGTAAACGATCAAACCAATGGAAAAGAGCAAGCACTGAGATAGCT
AAGGTAAGCCTTTATTTTTATAAGAGTCAGATATTCTTTAGTAGAACTGT
TTATCTAAGTGTTTTCACCATTTTATTTTGCAGTTTTTCTCGTATATTTG
TCTCGAATTTTCTTGAACACTTTGTGTTTTTATTTATTTCATTGTATCTT
GCATGCATTTAGTAAATATGCTTCATTTCTATGTCACTAGAACTGGAAAA
ACATGAGTATTTTGGATAAAAATTAGGGTTGATATTAAATTGTGGAAAAC
GAGGAACGAGAATATTTCTATGAATCTCTTTTGTGAAACAATGTATTAAA
GATCTGCAAATATCAAGTAGAATTAAAAAGGGTACTGTTTAGATTTAGCC
ATACACACAATTTCTTTTGGCCCAGAATCGGGCCTTTCATTAGCATGTCT
CTGTCAGTGGTGTTGTATGTCTGCCGTAGAAAAAGCAGTGCTTTGTCAAT
TCAAGTTTATTTTGGAAGAATCAGCGCCTTGTAACGACTATTGCTATGTG
GCTGGGCCTTCATGCCCCATCAGCTTCTTGTTTCTTCTTTCGGCTTCTTG
TTTCTTCTTATATAAGTGGTCTGACACGTACTTTTCTCGCAACACGATGT
AATATATAGGTTAATCTCTTCTCGAGCATCTTAACTTTTGTGTTTTGTTG
AATGTATTGTTTTGAGCGTTATTGTTTTTTTACAGATCTGTCGAAGTTGT
TTTTTCGAGCAGAACAAAGATCAATCATCTAGTAAGACTGGATCCAAAAC
TCGGACGCGTCCACAATTTCACCGTTCTGAATGTGGGATCACTACCGGTC
GTGCTTCCAAAGCATGGCATTTTGTACGCCGTGACCTAATCGTAAACAAA
ACTAAAGCTTTACTCAATAAACGATGCTTTGAAAATGAATTTTCAGACCG
CTTCTTGAATGAAGAAACTGAAGTTGAGGAATCTTGCGACTCGGACACAA
GTTATGAGAGTGATTCAGGAAGCATTGACGTTCTTCCTTTTCAATTAGCC
AACACAGGTTGGGTGACACCGGGGTCGTTAGTTCAAGTGAAACGCACTGA
TGCTCGGCAAGTCGTAGCGTCTCCCTCACCTTTGCTAACAGAAGAGATTT
CAGATGCTTTGTTGCAGACTGAGCTTGCAATGACTCGAGATATTTCTCCT
CAACCAATCAAATCTCCTGAATTAATCAAATCGCCCAGTGATACTTCGGC
AGATGACACGATCCTGAATGCACTCATGGAATCTTTCGAAACACCATTGA
GCATCGTAACCGTAGCGGAAGACACTGCAAACCCAGTGAAAACTCAACTA
ACAAACACTATAATCGAAGATGGACTATTAGATTATTTTACGGATCGACC
TGCTCGTGTGCGACGCATCAAACGGAAGCGAAGGCGGACCATATCAAGAA
GCAGTGTTATTAAGAAGAAAGTGAAGAAAGATACCTCGAAGCAATCAACT
TATAACGGACTCTGCAAATTAGTTACCGTTTTGAATCACACGAAAGGAAA
GTATGTTGATAATTCAAAAACATCAACTTTATTTGATACTCATGGTCTTG
ATTGGCGCAACAAGGATCTACCGTCTTATCTGAACATCAACACAAACCAA
TACGTAGATTCAAAAGGAGGTTACCGACAGAAAAAGAAAAATGTTGATAC
TTTTATGACTGATCAAAAATCAAAACCAGTCTTAAAGATCAAACGGAAAG
TTAAAGAATTTTCTCCGACACCATCTCCCATCCCTNCCCCCCCCCGCTTA
TTCCAACCCCCGGCTATTAGGTACCCTAGAGTAAGTCACACACTTGAATA
TTTGAACTGAATAATTTCTTTTTAAATCTCTCGAGCAGTTGCAGCAACAC
AGAAGAAATTTGCATCTGTAGCGTACGATTGTGAGATTTGTCAACAAAAC
TTAGCAAGAAAATCATACAAAAGTTATTCCAAAGAAACTGCACCACTTAT
TTATCTCAAGGTAAGATACTTTCTCAACCCTCATCATTTTTATGAGAATC
ATTTTGCATATTGATATAGTAAGTTCCCCAGCTAATGGATAATCTACAGG
CAGAGCAAACAAATCCTCTTAAATACCCTTTTGAAGGTGAAGACACTTTA
TTCTAAATCATCAAGTCGAACCTTAATTCCGATGTCCCTTTTGAGACTTA
CGGTATCTTTATTTATATTTCAGTTGTTCAAAGGTAACAAAGACAAGCTT
CGTATCTGTTCCAACTGCAACCTGAGAAAAATGAACGAGAAATACAACAA
CGTACAATCGCGCAAACGACCTGCTGGACAGAACGAAAAAGAGGTGAGAT
GCAATCCAATCCTTTAAATTTAAAATGACTTTCATGATAATACACGTTTT
TTTTTTATTAGAACACCTAAAATTTGGCTGAGCCTGGATGTGCTTATTTT
CTTGGTAGTTTTCAGCCTATAATGTTCTTAAATACGCTCTTAACTTTTTA
GACTACTCTAAATCGACAATATCATGCAAAACAAGACGACTTAAAGTCGA
AAATTTCGCATAATACTTGAACATTAACGACGAAGACGCGTGAAACGTGA
CTCCTGCAGCATTATGCATTTTGAATGAAGCGTTACAAAAAATATACACA
ATGTATTGTACACACAGGTCATAGATGTCATAGATACCCTGTTTTTTTAT
GAAAAATCTCAATCCATTAAAAAAAAGATTCCTTAAAAATGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCAAAATCGATCTAAGTC
AAGAAAATAGTAGCTTCAATGTTCTACAGATTTAACTTAGCTTATCAAAT
CTAAACAGATAAAAAGGACAATTTCAGCGTCATTACTATTTGTAAGTTTC
ATATAAATTGTTTTATAAACTACATTATACGATTTCAAAATATATGAACT
CCCATACACGCCGTGAAACTAAAAGAAAAAAGTAAAACCAAAATAATTGT
GTCTTGGATTTTAAAATTGTAGGCATCCTTAGTTTTCTTCTTAGTTTTTG
GAAAACCATCCATGGATTTTATTTTTAATATTTTTCTAGAAAAGGTAAAA
AAGTAGCACTTAGTATTCATTTGTATTAACTGTTTTCCTAGATTTTTTAC
TTGACACCACCCTAGCAGTCACTTAGTACCATCAAGTACTAACTGATTTT
TGAAAATTTTGTAGGTATACCACCACGGTACTAACCGGCATGATGTCTTG
TACTAACGGCTTGACCCCCCCCCCTGGACAGAGGGGAATTTATAGGACCT
CCACCCCACCGGGGTAGGTCCAAAAAGGGACATATTTCCAAATGTCTCAG
GCGCTCCAACCTTGATATCTGAAAATGTGCTACCTTGAGAACAAAACATA
CATTTACCTTTTAGCTAAGAAACACAACAAACGCACAAGCAGAAAGGCGT
GTTATTCATTAACTAAATATTTAAGTCTACTCAATATTTTGATGCATATT
TTGTTCCTCTTTTTGAGTGCTAGGTATATGAGCCTGANTTATTACCTTAT
TGCCCATTCTTTTTACATTCCAACGGCTTATTAGCAGACGCCCACGTTAA
AACTTAAAGAGCGAGCCAATATCTATCATCCCATCGGGGAAGAAAAGCTG
TAACTTTTACTAACCAAACTTATCGAACACCAATCAAACTTCATTGAATA
AAAAACTGTCATCATTAATGAGGGACCGCTGTATATACATTGTACAGTGG
TGTACGGTGGGGCTGGATCTAAATGTCCTTTGTACGGNTTATTGGTGCAT
TCACTAACTACACAAACATAAAGTACTTAGTAGTAAACAAATATTAAACC
TCTTTAAACACTCTACAAAAGACCAGAAAATATGATAAAAATTTACAGTA
TACAGCAGCAGCAAGTTTCAAAAGCAGTCATTAAACAGTTCTCACGATGA
ATGTTTGCAAAGGCTTGGTTACACTTCTTACCTTNGTACGGCAGTGTCGT
AGGCAGGGTCGTTTCGATTATACAAAAATGATTGCTGAATTTCAATTGAC
ATGATTTCTAAGAAATACCGTGAGATCGGGTAACTTACATAAGCCCTCAA
ATGAATTACCCATTTGGTCATTAAAATACGAAGTTAAATCAAAACAAAAA
TGGTAGGCNTTTTTATCACTTTTTATCTTTGTGAGTGAGTCCACCTTTAG
AATATTTGCCGTAGTACGCCCGCAGCCAAACGCCCACGCCATAATCTTCG
CCCCCAAAAAATTCTCCCCCGCCGCCGCCGCAGAAAGGCTATCGTAATAC
TTTCGCTAAGCGAAATTAATAAAGAGCACTTAAAATTGGTAAAATTTAGA
CAATATTTGACTCTCGATTTTGGAAAATCCACCCCTAAGTTCGGTTAAAA
CTGCTTAAAAAGAGGAAAAATTGTAGTTTCTTGTCATTTTTTTCCAAACT
GAGGCTGGACATGTTCTTACGATGTTCTTAATTTTTTGACAAATTTCAGC
CTCAATGTTCTTATAAACTAGGTTCTAATAAAAAAAAAACGTGTACCTCA
AAGTCATAATATAATTTCCAATCTCCTGCAAATAGTGAACGTTTGACTTA
AACTGTAACAATATTTTTATTGTATCTTTTCAGCCACCTGCCCCAAAAGT
TTCTAAACAAACACCAATACCAGCAAAATCAAGTTCAAGCTCGTCGTCTA
TGAAAGGGCAAACGAAACAAGCCTCCTCACAAGTATTCAAACTCAGTGAC
GCTGGTGCACAAGACATGAATGTTACCATCGTTAAAAGTCCAGATGCAGA
ACAGATGAAAATGATTCAAAACAGTAATGCTAAATACGTCATACTGAAAG
CAACACCGACTGCTAATGGCAACATCGTTACCGGTGATTTAGACCAAATA
TTAAGTGAAATCCGTATCCAAGGAAAGAACTATAAGATTGATAAGGATTT
CAAATTAAACGAACTTGTAAAAGAGAATGAAAACGCTGGCACTGTGACTG
CAAACTCTAAAGATCTTTTAGTGAAACAACTCCCAAACATTCTCAAACGA
ACCATAGGCCAACGCAACGGTGGTCCAACAACCTTTAAAATTGTCAACGT
CATGCCTCCTGCTATGGTTGCTAACAACACGAACGTGCCCAAAGTACTTC
CAAAAACAACAACACAGCAACACGTCACATCCTCTCTGCCATCTATTTCT
CTACAAGTTCAAGAACAGATCCGAACCTCTCTGGCTAATAGTAAGAAGCC
GAGAACAAATTTAACCGGATTGACCAACTCGCTTCCAACAAACGGACCGG
TCAAACCAATTCAAATGGTTAACCCGCCCAAAGTAACACTACCTGCTTTA
TCCGGTAAGAAACGGCCAATGCCTAATACTAACCAATCTGTTACACAGAT
TCAAAGACAAAAGATTGTTTCCTCAACAAAAACTTCAAGCAAAGGAGATT
CTAAAAAATGAAAAATGTATTTTGTAAAGTATTTAATTATGATTTTAAAG
AGTATTTTAATGGTCTTTTATTAAAAAAGGTTTAATATACAGTGTGCCCG
GAAAAAATATCATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030002XLOC_030002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047028-exon-scaffold_120-1575043694:208239..208391TCONS_00047028-exon-scaffold_120-1575043694:208239..208391Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1575043694:206742..207556TCONS_00047028-exon-scaffold_120-1575043694:206742..207556Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1575043694:206282..206403TCONS_00047028-exon-scaffold_120-1575043694:206282..206403Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1575043694:205949..206068TCONS_00047028-exon-scaffold_120-1575043694:205949..206068Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1575043694:201575..202508TCONS_00047028-exon-scaffold_120-1575043694:201575..202508Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1510915933:208239..208391TCONS_00047028-exon-scaffold_120-1510915933:208239..208391Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1510915933:206742..207556TCONS_00047028-exon-scaffold_120-1510915933:206742..207556Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1510915933:206282..206403TCONS_00047028-exon-scaffold_120-1510915933:206282..206403Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1510915933:205949..206068TCONS_00047028-exon-scaffold_120-1510915933:205949..206068Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1510915933:201575..202508TCONS_00047028-exon-scaffold_120-1510915933:201575..202508Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1491911889:208239..208391TCONS_00047028-exon-scaffold_120-1491911889:208239..208391Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1491911889:206742..207556TCONS_00047028-exon-scaffold_120-1491911889:206742..207556Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1491911889:206282..206403TCONS_00047028-exon-scaffold_120-1491911889:206282..206403Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1491911889:205949..206068TCONS_00047028-exon-scaffold_120-1491911889:205949..206068Clytia hemisphaericaexon
TCONS_00047028-exon-scaffold_120-1491911889:201575..202508TCONS_00047028-exon-scaffold_120-1491911889:201575..202508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:201575..208391 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0185723	0	0.00470304	0.526163	0	0	0	0	1.47272	6.9455e-08	3.58723	2.2512	1.66594	0.593092	1.49653	1.21541	1.6378	0.891618	4.22951	0.497025	1.69596e-08	2.0444e-05	1.2273	2.92359	4.17384e-05	0	0	0	2.85167	2.83064
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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