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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047033 ID=TCONS_00047033|Name=TCONS_00047033|organism=Clytia hemisphaerica|type=transcript|length=2772bp
CATAATTTCACTGTGGTGTGGCCTCTTTTGGCCAAAGTCGTGACGTCAGC
AAGAGAAAttgAGATAAAGACTTGATCTTAATTGATTGTTGATTAGTCTa
aattattgattaaaaacgaaagaaaacCCCAGACTTGTTGCCTACACTTT
AACTCTCGTCAGCAAACAAACACTTCAAAGATATTAACCATggttaaaat
catcaaaatcgCAATGTTCAGTTTATTCATCACCATCATCTACGGTTTGT
TATTACCGATCCCTTTATGTGACACTCGACGCAACCTCACACCTCAACAA
GTCAAATTATGCAAgaaatatcaacaaaaacatttaGAGCTGTTACTCGA
TGCGAAATTCATCTCAGAGTTTGAATGTGAACAACAATTCTCCCAGAGAA
GATGGAATTGCACTCTCCCTCCACCTTCATCTGTTTCACCACTACTATTA
CCTAAAATGCCACTCGCTACCAGAGAGACAGCATATATCTATGCATCAAC
ATCAGCTGCCATTATGCATACTATCAGTCGTGGTTGCATGGAAGGAAAAT
TAGCCAATCACTGCTCGTGTTCTAAAGAAGAACGCCCTGGATCATTGAAA
CAAAGTGATGTATGGGGAGGGTGTGGTGATAATTTACCATACGGATATCA
ATTCAGTAAGAAGTTCACGGATGCTGGTGAACAACTTTCTGAAGAAACGC
TTTCCAAGTTTTCAAGAGTTTTGATGAATCTTCATAATAACGAAGCTGGA
AGATGGGCTGTTTACGAGAAATCCTTTGTTCAATGCCGATGTATCGGAGT
GTCCACAAACTGTGCTATCAATACTTGCTACCGACAACTTGGTCGCTTCA
ATAAGGTTGCTAAACATCTTGAAAACCTCTACAGGTCATCTGTACAAGTC
GAACTAAAGCAGGGAAACGATGAtggaaattccaaaaatacTGAAATCAG
GCTCGTAGAAACCAACCCTAATTATAATAAGTATTCAGCTAAAGACATGG
TTTATATTAAAGATTCACCAAGTTACTGTGAAAAGAAATTATCTATTGGG
TCGTATGGTGTAGCAGGACGATCTTGCACCAAAACAGGGAATTCGGTGAA
CGATTGTAACATGTTATGCTGTGACAGAGGTTATTATTCGAGACGTGAGA
TTGTAAAAGCCAAATGTGGTTGTAAGTTGATTTGGTGTTGTGAGGTGAAG
TGTAAAACGTGTGAGAAAGAACAGAATAACCATTACTGTAAATGAAGAGA
TTACTCATTCAATAATGGTTTTGAGAACACTGAAAGTTGCGGCACGTAAC
ACAGTGAGATGGGCTACAATCGGTTCAATTGAAATTGCTCTGGAGAACAT
TTAAGCATTTCGATCGGAGGCCTTTGAAATATACAGTTAGAGTGTCACAC
AAGCAAAGACATGCGATTGTAGAAAAGTGTCTTTGCAACGCAGATCCAAC
GCAAATTTACCAAAGCTACAGGAACCATATTGCTTTACTTTATCCTATGG
GTATTATGTGAACTAATGGAGCCGGATTCTCTATAAAGCTGGAGCTTAAA
TATTGGGCAGAGAGTGAGAAATGACATTAAAATTGAAACGTAAAAgacat
tttctatttttaaaaatagcaacaacaatttaaaatttatttttgctgaa
aaaataaaCTATTATTATACCGAATAATGTACATAGTAGCTATTTATTAA
TATCGAAAAGAAATGTATCTGAAAACAATACTTATTTTCTCTTCAATGAT
CGCCTTTCCATTATTAAAACTTAACATGTTTCTTGCCTGTGACCCATCCA
AATATACTTATTTTCGATTCCGTCCGATTGTCAAGGAACTTTAATCTAAT
TTACGATATTTGTCGGCAAAAAACGGAATATAATTTGATATAATATCGTA
ATATGTATAACGgaataaaatttgatataatgtgaataaaaattaatttg
agTACCTTATCCGccttttttacgccggcccttattggcgtcaCTTTTAG
GCTCCTGGCGTAATAAGGaccggcgttaaaagggccggtgtaaaaagagc
caaaattttgcaaattttacttaaaagtggcgttaatttttcaccatttt
tctctatttaaaggattttagatctgattcgaagataaaaaattatccac
tgttttactccatatttaaaacttaacaaaaatcagtgattttcaacggt
ttactactgaaaaatgatattttaatgtaaattgaagcATAAATAGCCAT
TCTAACAAACTTTGGCGTTAtctacggccctaattggcgtaagcccaaaa
tcagGCTGCGGCGTAAAAGGggtcggcgtaaaaagggccattACGGACAT
AAAAATTTCACACAGTAGAAAATTAATgaggatttcaaaattttgaaaat
tttaataatgTGCGTATGTAacgtgaaaaaaagaaaatgttgaaatgaaa
atgtacaaatttaatatttacaggtaaaaaaattaaggaaatgaaaaaaa
agaaaaagacaaaaaatttagaacaagaaacaaaacaaaatgaaagtcCT
TGAAGTCGAGGTTGTTGTCGTAACGCTTACAACTCAAACAAAAATTATGT
GGTACCAAAATATATTTGCACGAAATCGAGATTGTCCTCGAAAACGGGAG
ATCCCTTTTCAAATAATATGACAACCGTATTGATATTATTCCACCTTGAA
TACTATATCTTTCGGAGCAATATCACCACAGTGGCACCCGCTCGAACATT
CCCTGCCAGTGAGTTGAATCAG Run BLAST on NCBI protein sequence of TCONS_00047033-protein >TCONS_00047033-protein ID=TCONS_00047033-protein|Name=TCONS_00047033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MVKIIKIAMFSLFITIIYGLLLPIPLCDTRRNLTPQQVKLCKKYQQKHLE
LLLDAKFISEFECEQQFSQRRWNCTLPPPSSVSPLLLPKMPLATRETAYI
YASTSAAIMHTISRGCMEGKLANHCSCSKEERPGSLKQSDVWGGCGDNLP
YGYQFSKKFTDAGEQLSEETLSKFSRVLMNLHNNEAGRWAVYEKSFVQCR
CIGVSTNCAINTCYRQLGRFNKVAKHLENLYRSSVQVELKQGNDDGNSKN
TEIRLVETNPNYNKYSAKDMVYIKDSPSYCEKKLSIGSYGVAGRSCTKTG
NSVNDCNMLCCDRGYYSRREIVKAKCGCKLIWCCEVKCKTCEKEQNNHYC
K Run BLAST on NCBI transcript from alignment at scaffold_120:227900..238533- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047033 ID=TCONS_00047033|Name=TCONS_00047033|organism=Clytia hemisphaerica|type=transcript|length=10634bp|location=Sequence derived from alignment at scaffold_120:227900..238533- (Clytia hemisphaerica)
CATAATTTCACTGTGGTGTGGCCTCTTTTGGCCAAAGTCGTGACGTCAGC
AAGAGAAATTGGTAATTTTCATTTTTCTTGTTATTGTTCGTTTATGAGTG
GTATTGAGAGTCATAAAACAATAGGAGGTAGCAGTTATTCAGACCCTTTA
TCTTGGGGTATTATTAATGGATACAGATTACAAAGAGACATACTGTAGTT
ACCTTGAAATCTTGCTAATTTGAACTTCTATTATTAGAATCTCCTTATAT
TTCTAACTTATGCCCAGTCCCCGTCAAGAAGAAACACTCCTAAAATGCCT
TCTTTAATTCGAATCTGTTATTCGAACAAATCAGATTTCCCGTTCGAATT
CGATTAAGCGCGAGTCAACTGTATACGGACAATTGAAACATTTCTAGGTT
GCAAAAGCGTGTTTTAAAATGAAGACCCTCTAAACAAGTTTGATGGCTGT
AAATTGTTTGTTTCTTTTGTGCGTGATGCAAAACCTAATGTTTACCTATG
CCTCACTGGCGTAAAAATCGAAATATTTCACTCTAAAGCAAGCCAAAACA
GTAGTGGTTAGGCATATTTCCTTACTTATATTTTGATTAAGTGTATTTAT
AGTCGTTAGTACGGTTGATGATGATCTTTTGGTGGGTGGGAATACTTGTC
AGAGAGATACAAGATGTCCTTATTGACGTTATTATATTGGCAATCAAGCG
AGTAGAATAATACGATGAGCCAGTACCGAACTGGAGGTTATTCTATTTTG
ATGCTTATCGAGGGATACCTTTAAATACATATGCCTCAGAATTTGAGTTG
CAATTCACTTTTACACACGGAATAATTCTCCCCAGTCTCTCTTCCGTTTT
TAGAGGGATCATGAATTGGGTAACATTTAACACACGATTTCAGCTACAGT
CAAAGGGCTTTATAGTCAGATACTGGCTAGACAGCTTGATGAAATTTGGC
AAAAAAAATTGACAGAATAAGGGATGCGATTTGAAAGGAAACGAGATTTT
GATTATAATGACAAAATATGCGACTATCATTTCCAGTTGATTGATGTCGT
CAATGGTTCAGTAGTGCGAGATTTATTCAAGGTCGTGAAGATATGGAAAA
CATCTTAGTATGATCACATTCAAGCATTTATACAGTAGCGATGCTTTATT
GTATTGCCTAATCATAGTAAATGGTATATTGGGGACGGCTCAGAATCTGA
GAGAGGAGTATTAATTATATGAATCCTTTCAGATCTGTTACCAAGGGACA
TTCATTACCATGCTTCCAATCTATGTATCACAGGCTTAAGATTCTTTTAA
TAGGACCAAGTGATAAAAGTTTGGCTTTAATTTGTTTGACTGCCAGGTAT
CTGAAAACCATTTGAAAAATGGAGGCGTAAATCACATTATGTCGGATTTG
TTTACGATTATTTCTTGGCTTTTAAAAGGTGCACTAGCAATAGACCTTAC
CGGAGTTTTTGATTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCGA
GTGTATTCCAATAGAAATCTCTTAGGAATTCCTCGAGGGAATTCTATTGC
AATACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAATCAAA
AATTCCGATAAGGTCTATTGGTCTTTTTACTTTTAGTTCAGCCTGTGAAT
TTAAGATTTTATTGTAGCGACCTAGCCTGAATATGAAAAAGGGAATCAAA
TTTTGTTTGTTGATATTTGTGGTTGCAATATGCCATTGAAAATTGTATTC
TTTCGTCACGTTAAGACAACATATGAGGTTCTAACCAAATTATTGTTGCA
GGAAAAAACTTGTCATTTAGTTTGTTAAGCATCCGCTGTGTGCTCTGTTG
GGTTTCGAGACTTCTTTCAGTCAAGTGGAAAAAAGGTGAAAGAGACCGCA
AGAAAAACGATTGACCTGTAGTTGGTTTGTTAAAGGCCCGGTGGGGGTAC
TAGGGTTGGTGAATGAGGGGTATGTGCGGACGGGACCTCCGAAAACCGAC
CCTTAGAGAGACCAAATTTTAGTGAAAAAGTGACCCTTAGAGAGACTTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTAACCCTTAGAG
AGACTTTGAAAGGTGAAAAACCCGACCCTTACCGTCCGCACATACCCAGC
ACCTATTTTTGCCTAAGTACCCCCCCCCCGGGGTTAAAGGTTCTATGATT
TAGTTCTATGATCCACCCTTACGGAGGATTTTTAGGGGTCATTGTGTTAG
TTTGTAATTTTAGTCAAAAACACATACAAAGTTTATGTAACGAAATATGA
CCTTTTTGTTTGAAATATCTAAATTGTTCAGAAAGTGACAAGTATTTTAT
TTGGTGTCACTTCTTACGAACATGTGAACTTGTTGTAGATAAATTTTTGG
TCAAATTTAGGATATGTTATCTTTTTGAGGGGAGAGCCGCAACGAAATAT
GAAGAATATGCTATTTTAACCTCCAGCCCAATATCCCTCTCCGTCCAATT
AATCATGGAAAACTCAATTTGTTTTGGCAGAGAAAGGTAGCTGTGAAAAG
CAGGAGATTGGCTTTATTCTCTGATTTTCTTTCTTTGGATAATAAGAAGG
CTCGCCTAGAAATTTCAACTGCCATATTTGGCAGCGACAATGAAGCAATA
TCGAGTAGTAATCATTATTGGCTGCATGTCTTACCTATCAGATTTGTTTT
AGTCACCACCCGAAAGATCTACACCCCCGCCCGACTTTCAAGTTAGAAGA
GATTTTCTCCTTTTCCCACACGTAAAATATCCTTGTTTTATAAATAGCAA
TTTTTAAACCAAATCCAATTATAAGAGATTTTTCTCAAAATAATACTCGG
ATAATCTGCAAAGAGACCGAACTGTCTAATTTCATGATACAACATTCTGC
AGTGTCGTCACAGCAGGTGTATAATGCTAATTGGGTATAGATTTTACGTT
TGAGTTTATTTATGTGAATTTCTTAATCTTGTAATGAGGGAAAGAATTTT
CCTTCCTATAAAATTTTGGTGTGATCAAAGTCAAAGACTAATTCTACATT
GATTGTCATTTGAACTGGACGAACTGGGGGAGACACTGAAAAGGTAGGCA
AATCGAAAATCGACTGGATTTTTAAAAAACTTGTGCTAGTTTTCTGTATG
CTTTCAATAGGAATTACGAGTCTCTTATGACTCGAACGTCAAGAAAGAGT
CGTTGAACGTTCAAATTGAAGAAAGTTTGAGGAAAAGTGATTTCTCAGGT
TTAATCATTAAAAAAAAGTTTAGATAACCACAGTACAAATTATCGTTTAA
CAAAAATGTTGTTTTTCTTAAACAATTCGCATTATTTGTTCCTGTCAAAA
TGGTGACCACATGAAAGGAAATGCAGTTTCAAGGTGTACATTTGTTTCTC
TCCTTATTCAAATGACTCGTATAATTTCATCTGCGGTCAAATCGACTAAC
AGGTAAAACAGTTATTTCAGAAAAAAAAATTTAAAGGCGACTTGGTTGAT
TAGATAAAAATGATCTCAGAAATCAAATTAACGATTTGTTAAAAGGTTAT
AGTGGCCTCCATTATGATGTTATTTAACATATGATTTAATGAAATTGACG
TCATAAATCTGTAGGTAGCATCAACAACTTGTTGGTATTTATATTTTCGA
TGCTGATATTCGATGAGCTGCTTTGGCGCCCACACTAAATGATTTCTTTG
CGTGTCTCATTTTTTATTTTGCACCTTATTGAAACGCATCTATATGGTAG
GTAGGCTTTGTTTTGATTCATATGTCCTCTGACATTACATCGCGGACCCA
ATAGTTGATAGGATAGTAAGTGATAAAAAATCACTCATTACGTCATTTGC
AACCATTCAGCTGTTGTGTCCGTGGAAGACATTGCAATGGTTTATGTCAT
GTATAAGGCTGCTTAAATTACGTGGATTTTGATCATCGAATTATGAACAA
AGGATGTATAATTTCTGAGTTGATGTCTAGTTATTGAGACAGGGATGTGG
AAGATGTCATTGTAGCCTTTAGTTCCCTCTATAATTTCCAATGACGTGAA
AATTCCGCAAATTTTGAATATTTTTTACTAATTCCGAAATTCCGCAAATT
ATTTTGCTAAATGCCGTTTTTCCGCACTAAAATTGTCTAATTTTCCGTCT
CCGTCAGAGAACCCAATTTCCGTAATTCCGTCTAAATTTTCGCCAAATTC
TGCCACTCCGTCCGAAAAAAGGGCCGATTCCGCTCCTCCGCCAACCATGA
ACCCCCCCCCCCCCCTTTTTTTTGGATATAGGACCCAGGCTAGATGCTTA
GCGGAAATATTTTACATCACGCACCATTTATGGAAGTTTCGAAGTATTCA
GGGTCAGTTCGTCAGTTTGTTACAGCAATGTGTCACAATTTAAATAAAAT
TATGAGATATAATAAAGGGGAAAATATTGTTTCATCAAGATTTTATCTTT
TGCCTGTTTAGATTAGCATATAGTGACATCACAATACAAACCTATCGCAT
GCAAAAATGTTGATTTGATTACTGAAGGATTCAGACTATTTGATGGAAAG
AAAAAGTGAGATTTTTGGGGTCTCTTAATTACATATCCCCTCTCCTAAAA
AAATCCTTAAATTCACAGATTTGTTTAACATAGGTTTCTTCTACATTTTC
CTTTTCTCCCTTTATTTTATACCTTAATTGCATTCAGTTAAAGATGACAC
AACAGTTCAAAGTATTGACTTTGTAATTTAGTCCATCATACCGCGCTTCC
TTTAATGTCACTTTTTTTAATGAAAAAATCATTTATTTTTTGTCGGCTGA
CCGGTGAATTTTCTCTTCTAAGCTTTTATTGTTGGGGTTTGTCATGATAA
AACGGTTTTTTTTGGTATGGAGGTTAAGTTTAGTTATTGTTTTGACTGGA
CTCGAAAGATGCTTGACCTATAGTTAGGTATAAGAGTTATAAAGGTTTAA
TTTATTTGGTAGGATCCCTAGATCGGATCACTAGGCTGGTCGAGTGGTTA
TTCATTTCTGGGTGTTGTGTTGAAACGCTGTAAGGAGATATTTGTGGGTA
TACCTTTTAGACGAATCTGAGCGGTCAGATAAATGAATGACAGGTCATAG
ATAGAAAGGTTAGATATAATCTGAAACTTAAGTCGAAACAAATCAGATTT
GAGTCTAGATATTGAGAATTGATTTGGTATCAAAGTTTTTATCTCAAAGA
TTGTCTTCTTAGTCTTACTAAAATTTATTAAATTTGACATGACTTTAACA
CTCTGGTCAAGTTACAAATTGAGATTTAGCAATAACCAGGGCAATAACTT
ATCGAGAATTTTGAAATAATTTTTTATGGTATTTTTTATAGAGATAAAGA
CTTGATCTTAATTGATTGTTGATTAGTCTAAATTATTGATTAAAAACGAA
AGAAAACCCCAGACTTGTTGCCTACACTTTAACTCTCGTCAGCAAACAAA
CACTTCAAAGATATTAACCATGGTTAAAATCATCAAAATCGCAATGTTCA
GGTACGAACCCCTTTTTTGCATATTATTACAGCCTCTCCTTAACTGGAAC
CTCAATAACTGGAATACGTTTTAAAGCTTTCCTTTCAGCAAGCTCTTACA
AAAGGAACTTCAAAGCTCAATTACTCGAATTTTTTTCCTATTTCGAACAA
TTTCTAATTCCTTCTATCCGTTCGAATTATGGAGAGCCTTTTACTGTATC
TAGGTTTTAGATTATTTTACACCCCTATCTGTGGAACAATTTTTTCATGG
AGGTAGAGTTACTCACAGCCTAAATGTGGAATTAGAAATTAAATTGTTGG
CGGAGACCTGAACACATTTAAAATCACGAAATTAAAAGAAGTGTGCTAGA
TACCTCGTAATCCACATTACGAAATTTTGATAACAGTTTATTCGTGCTTT
GATCATGCCGTGATAAAGATTTTGAGGTAGTTCTTTTGACGAAATACTCG
ATAAGTAGTTTTTCACTTTTTTTGGTTCGTCTACCATATCTCAAAACCCA
GTCGAGCGAGTGTCTACCCATTTCAACCTTAAAAGGCTAGTTTTAAACTA
TTAAACTGGTCCAAACCTCTTATACAATTTCTATTTTTAGGCATTTTCTG
TATCGCTTTACTTTCTCTATTTTCAGTTTATTCATCACCATCATCTACGG
TTTGTTATTACCGATCCCTTTATGTGACACTCGACGCAACCTCACACCTC
AACAAGTCAAATTATGCAAGAAATATCAACAAAAACATTTAGAGCTGTTA
CTCGATGCGAAATTCATCTCAGAGTTTGAATGTGAACAACAATTCTCCCA
GAGAAGATGGAATTGCACTCTCCCTCCACCTTCATCTGTTTCACCACTAC
TATTACCTAAAATGCCACTCGGTAAGATTTTAAACTTATGCGTGGTACAG
TCTCTTGTCTCGATTGCTGCTTTACGACAAACTTTTGAATCTATATTTTT
AGTGAAGTGACTGTAAATTGAATCCAACCATCCATTACAGGCATTACAAG
AACAAATTTGCTTTCCTTCTACAGCGTTTGCGAATTATGAATTTCTTTGG
ATTCTTAATTTCTACTGTAAGCACAGTTTAATTTCCCGTAGTTAGTACTA
GGAAGTTTTTAGGTTTCTCTAAATTATATCTAAATTTCAAAGAACAATCA
TCCTAACCTCGTTACTTATAAAAAACTTTCCTCAATTTTTTCTCAAACAT
AGCTACCAGAGAGACAGCATATATCTATGCATCAACATCAGCTGCCATTA
TGCATACTATCAGTCGTGGTTGCATGGAAGGAAAATTAGCCAATCACTGC
TCGTGTTCTAAAGAAGAACGCCCTGGATCATTGAAACAAAGTGATGTATG
GGGAGGGTGTGGTGATAATTTACCATACGGATATCAATTCAGTAAGAAGT
TCACGGATGCTGGTGAACAACTTTCTGAAGAAACGCTTTCCAAGTTTTCA
AGAGTTTTGATGAATCTTCATAATAACGAAGCTGGAAGATGGGTAAGTGG
AATCGAAATTTTTTGTTAAAAATGTAATAGAATCACCGTATTTTTTTTGG
TGAGTTCCTGGTGAAGAGCTGAATTTTTTTTAGTAGATAGTAACCTCACC
GTGAAACCAACTGAATAATCCTCTAAAAAGACACGTCACTTTTTCATTGT
AAATCCGTCCAAAAATTACGGTGATTTTTTGTTGGATTGGAAATTCGCGA
TGGGTAGTCGAAAATGTTTTGACTCGTTGTAGATAAATTAGATACTTGGA
TGCATACTTTGATCGATAACATGTAAAGAATTTTACATCTCCTTTGTTAC
AATTTGGTGGTTGTAATCCTTATAAGGTCATGTAAGTTTTCAAATCTTTT
CATCAACCGTCGAGTCAAAGAAGGGAAATGCTTTAAAATCCTGAAAATCA
AATGAAACGCTACAATATTCAGGCCCCCATTTCTGACATCCAATAACAAT
TTTTTTAGAGAAAGCCCCGCCTCTGCTAAAACCAAGCAGGAACCAAAACA
GGAAATGCATGTATTCGCTTCTCAGATATTTTGAAATGATTTTAAAATAC
CTTTATATTCTTAACACAAACAAACAGAAGTTTTAACTTCTCCTAAATAT
CCCTCACTGTATCCTGTAGTTGATCACGTTCCCACGTGCTTGCAATAAAC
ATCAAAAATTATCAAACAATGGAGACTCTTTAACTTGAACTTCTATAGCT
CGAACAACTTTACTAATTTCCATAACTCGAACATACATGCGTTTTCGACT
TGAAGACTTCGCTGTACTTGTAACTGTCTCTTATTTTTACCATAAATGAC
TGTGTCTTGTGTAGGAGCTGTCTCCCTAATTATACTTGTGTGCCATATCT
AACACCCCAAATCGGTTATATTATTATTAATATCGGTTGTATTGACCCGG
AGAGGAACTTTTCAAGTAATTGGGATAAAAGTTCCCACCAAAATAGCGTC
ACAAACTAATGAAGTCCATTGTTTTCAGCTCAAAAGAAAGACAGTCGGAT
GAAATTTTTATGGGGCCCATAACCGTGATTCGTCATTTGGCTAAAGTGAC
TTCTGAAATCTGAAATTGGATAGAGTTATGAGAATATAAATTGTATCGTG
GTCCTCCTTTTCCTTCGTACACTTTATAATTATATATTCAAGTCTACTTT
CTTTCTTCCATTCTACAGGCTGTTTACGAGAAATCCTTTGTTCAATGCCG
ATGTATCGGAGTGTCCACAAACTGTGCTATCAATACTTGCTACCGACAAC
TTGGTCGCTTCAATAAGGTTGCTAAACATCTTGAAAACCTCTACAGGTCA
TCTGTACAAGTCGAACTAAAGCAGGGAAACGATGATGGAAATTCCAAAAA
TACTGAAATCAGGCTCGTAGAAACCAACCCTAATTATAATAAGTATTCAG
CTAAAGACATGGTTTATATTAAAGATTCACCAAGTTACTGTGAAAAGAAA
TTATCTATTGGGTCGTATGGTGTAGCAGGACGATCTTGCACCAAAACAGG
GAATTCGGTGAACGATTGTAACATGTTATGCTGTGACAGAGGTTATTATT
CGAGACGTGAGATTGTAAAAGCCAAATGTGGTTGTAAGTTGATTTGGTGT
TGTGAGGTGAAGTGTAAAACGTGTGAGAAAGAACAGAATAACCATTACTG
TAAATGAAGAGATTACTCATTCAATAATGGTTTTGAGAACACTGAAAGTT
GCGGCACGTAACACAGTGAGATGGGCTACAATCGGTTCAATTGAAATTGC
TCTGGAGAACATTTAAGCATTTCGATCGGAGGCCTTTGAAATATACAGTT
AGAGTGTCACACAAGCAAAGACATGCGATTGTAGAAAAGTGTCTTTGCAA
CGCAGATCCAACGCAAATTTACCAAAGCTACAGGAACCATATTGCTTTAC
TTTATCCTATGGGTATTATGTGAACTAATGGAGCCGGATTCTCTATAAAG
CTGGAGCTTAAATATTGGGCAGAGAGTGAGAAATGACATTAAAATTGAAA
CGTAAAAGACATTTTCTATTTTTAAAAATAGCAACAACAATTTAAAATTT
ATTTTTGCTGAAAAAATAAACTATTATTATACCGAATAATGTACATAGTA
GCTATTTATTAATATCGAAAAGAAATGTATCTGAAAACAATACTTATTTT
CTCTTCAATGATCGCCTTTCCATTATTAAAACTTAACATGTTTCTTGCCT
GTGACCCATCCAAATATACTTATTTTCGATTCCGTCCGATTGTCAAGGAA
CTTTAATCTAATTTACGATATTTGTCGGCAAAAAACGGAATATAATTTGA
TATAATATCGTAATATGTATAACGGAATAAAATTTGATATAATGTGAATA
AAAATTAATTTGAGTACCTTATCCGCCTTTTTTACGCCGGCCCTTATTGG
CGTCACTTTTAGGCTCCTGGCGTAATAAGGACCGGCGTTAAAAGGGCCGG
TGTAAAAAGAGCCAAAATTTTGCAAATTTTACTTAAAAGTGGCGTTAATT
TTTCACCATTTTTCTCTATTTAAAGGATTTTAGATCTGATTCGAAGATAA
AAAATTATCCACTGTTTTACTCCATATTTAAAACTTAACAAAAATCAGTG
ATTTTCAACGGTTTACTACTGAAAAATGATATTTTAATGTAAATTGAAGC
ATAAATAGCCATTCTAACAAACTTTGGCGTTATCTACGGCCCTAATTGGC
GTAAGCCCAAAATCAGGCTGCGGCGTAAAAGGGGTCGGCGTAAAAAGGGC
CATTACGGACATAAAAATTTCACACAGTAGAAAATTAATGAGGATTTCAA
AATTTTGAAAATTTTAATAATGTGCGTATGTAACGTGAAAAAAAGAAAAT
GTTGAAATGAAAATGTACAAATTTAATATTTACAGGTAAAAAAATTAAGG
AAATGAAAAAAAAGAAAAAGACAAAAAATTTAGAACAAGAAACAAAACAA
AATGAAAGTCCTTGAAGTCGAGGTTGTTGTCGTAACGCTTACAACTCAAA
CAAAAATTATGTGGTACCAAAATATATTTGCACGAAATCGAGATTGTCCT
CGAAAACGGGAGATCCCTTTTCAAATAATATGACAACCGTATTGATATTA
TTCCACCTTGAATACTATATCTTTCGGAGCAATATCACCACAGTGGCACC
CGCTCGAACATTCCCTGCCAGTGAGTTGAATCAG Coding sequence (CDS) from alignment at scaffold_120:227900..238533- >TCONS_00047033 ID=TCONS_00047033|Name=TCONS_00047033|organism=Clytia hemisphaerica|type=CDS|length=4224bp|location=Sequence derived from alignment at scaffold_120:227900..238533- (Clytia hemisphaerica)
GCTGTTTACGAGAAATCCTTTGTTCAATGCCGATGTATCGGAGTGTCCAC
AAACTGTGCTATCAATACTTGCTACCGACAACTTGGTCGCTTCAATAAGG
TTGCTAAACATCTTGAAAACCTCTACAGGTCATCTGTACAAGTCGAACTA
AAGCAGGGAAACGATGATGGAAATTCCAAAAATACTGAAATCAGGCTCGT
AGAAACCAACCCTAATTATAATAAGTATTCAGCTAAAGACATGGTTTATA
TTAAAGATTCACCAAGTTACTGTGAAAAGAAATTATCTATTGGGTCGTAT
GGTGTAGCAGGACGATCTTGCACCAAAACAGGGAATTCGGTGAACGATTG
TAACATGTTATGCTGTGACAGAGGTTATTATTCGAGACGTGAGATTGTAA
AAGCCAAATGTGGTTGTAAGTTGATTTGGTGTTGTGAGGTGAAGTGTAAA
ACGTGTGAGAAAGAACAGAATAACCATTACTGTAAATGACTACCAGAGAG
ACAGCATATATCTATGCATCAACATCAGCTGCCATTATGCATACTATCAG
TCGTGGTTGCATGGAAGGAAAATTAGCCAATCACTGCTCGTGTTCTAAAG
AAGAACGCCCTGGATCATTGAAACAAAGTGATGTATGGGGAGGGTGTGGT
GATAATTTACCATACGGATATCAATTCAGTAAGAAGTTCACGGATGCTGG
TGAACAACTTTCTGAAGAAACGCTTTCCAAGTTTTCAAGAGTTTTGATGA
ATCTTCATAATAACGAAGCTGGAAGATGGTTTATTCATCACCATCATCTA
CGGTTTGTTATTACCGATCCCTTTATGTGACACTCGACGCAACCTCACAC
CTCAACAAGTCAAATTATGCAAGAAATATCAACAAAAACATTTAGAGCTG
TTACTCGATGCGAAATTCATCTCAGAGTTTGAATGTGAACAACAATTCTC
CCAGAGAAGATGGAATTGCACTCTCCCTCCACCTTCATCTGTTTCACCAC
TACTATTACCTAAAATGCCACTCGATGGTTAAAATCATCAAAATCGCAAT
GTTCAGGCTGTTTACGAGAAATCCTTTGTTCAATGCCGATGTATCGGAGT
GTCCACAAACTGTGCTATCAATACTTGCTACCGACAACTTGGTCGCTTCA
ATAAGGTTGCTAAACATCTTGAAAACCTCTACAGGTCATCTGTACAAGTC
GAACTAAAGCAGGGAAACGATGATGGAAATTCCAAAAATACTGAAATCAG
GCTCGTAGAAACCAACCCTAATTATAATAAGTATTCAGCTAAAGACATGG
TTTATATTAAAGATTCACCAAGTTACTGTGAAAAGAAATTATCTATTGGG
TCGTATGGTGTAGCAGGACGATCTTGCACCAAAACAGGGAATTCGGTGAA
CGATTGTAACATGTTATGCTGTGACAGAGGTTATTATTCGAGACGTGAGA
TTGTAAAAGCCAAATGTGGTTGTAAGTTGATTTGGTGTTGTGAGGTGAAG
TGTAAAACGTGTGAGAAAGAACAGAATAACCATTACTGTAAATGACTACC
AGAGAGACAGCATATATCTATGCATCAACATCAGCTGCCATTATGCATAC
TATCAGTCGTGGTTGCATGGAAGGAAAATTAGCCAATCACTGCTCGTGTT
CTAAAGAAGAACGCCCTGGATCATTGAAACAAAGTGATGTATGGGGAGGG
TGTGGTGATAATTTACCATACGGATATCAATTCAGTAAGAAGTTCACGGA
TGCTGGTGAACAACTTTCTGAAGAAACGCTTTCCAAGTTTTCAAGAGTTT
TGATGAATCTTCATAATAACGAAGCTGGAAGATGGTTTATTCATCACCAT
CATCTACGGTTTGTTATTACCGATCCCTTTATGTGACACTCGACGCAACC
TCACACCTCAACAAGTCAAATTATGCAAGAAATATCAACAAAAACATTTA
GAGCTGTTACTCGATGCGAAATTCATCTCAGAGTTTGAATGTGAACAACA
ATTCTCCCAGAGAAGATGGAATTGCACTCTCCCTCCACCTTCATCTGTTT
CACCACTACTATTACCTAAAATGCCACTCGATGGTTAAAATCATCAAAAT
CGCAATGTTCAGGCTGTTTACGAGAAATCCTTTGTTCAATGCCGATGTAT
CGGAGTGTCCACAAACTGTGCTATCAATACTTGCTACCGACAACTTGGTC
GCTTCAATAAGGTTGCTAAACATCTTGAAAACCTCTACAGGTCATCTGTA
CAAGTCGAACTAAAGCAGGGAAACGATGATGGAAATTCCAAAAATACTGA
AATCAGGCTCGTAGAAACCAACCCTAATTATAATAAGTATTCAGCTAAAG
ACATGGTTTATATTAAAGATTCACCAAGTTACTGTGAAAAGAAATTATCT
ATTGGGTCGTATGGTGTAGCAGGACGATCTTGCACCAAAACAGGGAATTC
GGTGAACGATTGTAACATGTTATGCTGTGACAGAGGTTATTATTCGAGAC
GTGAGATTGTAAAAGCCAAATGTGGTTGTAAGTTGATTTGGTGTTGTGAG
GTGAAGTGTAAAACGTGTGAGAAAGAACAGAATAACCATTACTGTAAATG
ACTACCAGAGAGACAGCATATATCTATGCATCAACATCAGCTGCCATTAT
GCATACTATCAGTCGTGGTTGCATGGAAGGAAAATTAGCCAATCACTGCT
CGTGTTCTAAAGAAGAACGCCCTGGATCATTGAAACAAAGTGATGTATGG
GGAGGGTGTGGTGATAATTTACCATACGGATATCAATTCAGTAAGAAGTT
CACGGATGCTGGTGAACAACTTTCTGAAGAAACGCTTTCCAAGTTTTCAA
GAGTTTTGATGAATCTTCATAATAACGAAGCTGGAAGATGGTTTATTCAT
CACCATCATCTACGGTTTGTTATTACCGATCCCTTTATGTGACACTCGAC
GCAACCTCACACCTCAACAAGTCAAATTATGCAAGAAATATCAACAAAAA
CATTTAGAGCTGTTACTCGATGCGAAATTCATCTCAGAGTTTGAATGTGA
ACAACAATTCTCCCAGAGAAGATGGAATTGCACTCTCCCTCCACCTTCAT
CTGTTTCACCACTACTATTACCTAAAATGCCACTCGATGGTTAAAATCAT
CAAAATCGCAATGTTCAGGCTGTTTACGAGAAATCCTTTGTTCAATGCCG
ATGTATCGGAGTGTCCACAAACTGTGCTATCAATACTTGCTACCGACAAC
TTGGTCGCTTCAATAAGGTTGCTAAACATCTTGAAAACCTCTACAGGTCA
TCTGTACAAGTCGAACTAAAGCAGGGAAACGATGATGGAAATTCCAAAAA
TACTGAAATCAGGCTCGTAGAAACCAACCCTAATTATAATAAGTATTCAG
CTAAAGACATGGTTTATATTAAAGATTCACCAAGTTACTGTGAAAAGAAA
TTATCTATTGGGTCGTATGGTGTAGCAGGACGATCTTGCACCAAAACAGG
GAATTCGGTGAACGATTGTAACATGTTATGCTGTGACAGAGGTTATTATT
CGAGACGTGAGATTGTAAAAGCCAAATGTGGTTGTAAGTTGATTTGGTGT
TGTGAGGTGAAGTGTAAAACGTGTGAGAAAGAACAGAATAACCATTACTG
TAAATGACTACCAGAGAGACAGCATATATCTATGCATCAACATCAGCTGC
CATTATGCATACTATCAGTCGTGGTTGCATGGAAGGAAAATTAGCCAATC
ACTGCTCGTGTTCTAAAGAAGAACGCCCTGGATCATTGAAACAAAGTGAT
GTATGGGGAGGGTGTGGTGATAATTTACCATACGGATATCAATTCAGTAA
GAAGTTCACGGATGCTGGTGAACAACTTTCTGAAGAAACGCTTTCCAAGT
TTTCAAGAGTTTTGATGAATCTTCATAATAACGAAGCTGGAAGATGGTTT
ATTCATCACCATCATCTACGGTTTGTTATTACCGATCCCTTTATGTGACA
CTCGACGCAACCTCACACCTCAACAAGTCAAATTATGCAAGAAATATCAA
CAAAAACATTTAGAGCTGTTACTCGATGCGAAATTCATCTCAGAGTTTGA
ATGTGAACAACAATTCTCCCAGAGAAGATGGAATTGCACTCTCCCTCCAC
CTTCATCTGTTTCACCACTACTATTACCTAAAATGCCACTCGATGGTTAA
AATCATCAAAATCGCAATGTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047033-exon-scaffold_120-1575043694:238473..238533 | TCONS_00047033-exon-scaffold_120-1575043694:238473..238533 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1575043694:232583..232742 | TCONS_00047033-exon-scaffold_120-1575043694:232583..232742 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1575043694:231713..231957 | TCONS_00047033-exon-scaffold_120-1575043694:231713..231957 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1575043694:231092..231381 | TCONS_00047033-exon-scaffold_120-1575043694:231092..231381 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1575043694:227900..229915 | TCONS_00047033-exon-scaffold_120-1575043694:227900..229915 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1510915933:238473..238533 | TCONS_00047033-exon-scaffold_120-1510915933:238473..238533 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1510915933:232583..232742 | TCONS_00047033-exon-scaffold_120-1510915933:232583..232742 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1510915933:231713..231957 | TCONS_00047033-exon-scaffold_120-1510915933:231713..231957 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1510915933:231092..231381 | TCONS_00047033-exon-scaffold_120-1510915933:231092..231381 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1510915933:227900..229915 | TCONS_00047033-exon-scaffold_120-1510915933:227900..229915 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1491911889:238473..238533 | TCONS_00047033-exon-scaffold_120-1491911889:238473..238533 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1491911889:232583..232742 | TCONS_00047033-exon-scaffold_120-1491911889:232583..232742 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1491911889:231713..231957 | TCONS_00047033-exon-scaffold_120-1491911889:231713..231957 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1491911889:231092..231381 | TCONS_00047033-exon-scaffold_120-1491911889:231092..231381 | Clytia hemisphaerica | exon |
| TCONS_00047033-exon-scaffold_120-1491911889:227900..229915 | TCONS_00047033-exon-scaffold_120-1491911889:227900..229915 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:227900..238533 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005817 | Wnt |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005102 | receptor binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007275 | multicellular organism development |
| GO:0016055 | Wnt signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007275 |
multicellular organism development |
| biological_process |
GO:0016055 |
Wnt signaling pathway |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005102 |
receptor binding |
Blast
BLAST of TCONS_00047033 vs. Swiss-Prot (Human)
Match: WNT5A (Protein Wnt-5a OS=Homo sapiens GN=WNT5A PE=1 SV=2) HSP 1 Score: 228.409 bits (581), Expect = 3.315e-66 Identity = 121/310 (39.03%), Postives = 178/310 (57.42%), Query Frame = 1
Query: 262 PLCDTRRNLTPQQVKLCKKYQQKHLELLLDAKFISEFECEQQFSQRRWNCTXXXXXXXXXXXXXXXXXATRETAYIYASTSAAIMHTISRGCMEGKLANHCSCSKEERPGSLKQSDVWGGCGDNLPYGYQFSKKFTDAGEQ--LSEETLSKFSRVLMNLHNNEAGRWAVYEKSFVQCRCIGVSTNCAINTCYRQLGRFNKVAKHLENLYRSSVQVELKQGNDDGNSKNTEIRLVETNPNYNKYSAKDMVYIKDSPSYCEKKLSIGSYGVAGRSCTKTGNSVNDCNMLCCDRGYYSRREIVKAKCGCKLIW 1185
PLC L+ Q KLC YQ H++ + + EC+ QF RRWNC+ +SV ++ +RETA+ YA ++A +++ +SR C EG+L+ C CS+ RP L + +WGGCGDN+ YGY+F+K+F DA E+ + + + +R+LMNLHNNEAGR VY + V C+C GVS +C++ TC+ QL F KV L+ Y S+ + L N+ +LV+ N +N + +D+VYI SP YC + S GS G GR C KT ++ C ++CC RGY + + +C CK W
Sbjct: 67 PLCSQLAGLSQGQKKLCHLYQD-HMQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQI---GSRETAFTYAVSAAGVVNAMSRACREGELST-CGCSRAARPKDLPRDWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRL----------NSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTERCHCKFHW 361
The following BLAST results are available for this feature:
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