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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047098 ID=TCONS_00047098|Name=TCONS_00047098|organism=Clytia hemisphaerica|type=transcript|length=2733bp
TGAAAAAGGATGCATGGTCTCGAGatAGAAGAAACCAAAATGTACAACAA
TGTGAAAAACATAATAAGAAATAACATCACGCCTGACATGATTGGAAAAC
CATATCTCCTGGCAGAAACTTCTTTACGTACAACTGATTGGGGAAAAGAT
TTTCGATTTCTTGATGACAAGATGGCAGATGTTAAACCAGACatagaaat
tgacaaaaattgcaAATGATATTTATTTGGTGAAGAATTTGTTGACTGAA
CCTCAATGCAAAGAAATTATTGGTAAAGCTGAAAATCTAAACTTGCAGTT
ATGTTGCTATGATGAAACAAGAAAGAATTCTCGATTAGTTTTATTTGATG
AAGAATTTGCAGATTTTCTTTGGGATAATATTTCCAACCAATTTGAAAAG
CAAATCGGAGATGCTCGTATTCATCCATTTGGCTTTGATGCAGCTAGGGG
CCATTGGAAGTTATCTTGTGTCAATCAAGCAATGCGCCTGAGTGAATAGa
tatggcggaaaaaagaaagaattttttgctCCTCATAGAGATGCTTCATT
TTGTCCCAATGGTCACAAAAGATCGTTGTATACTATGCTCATCTATTTGA
ATGATGGTTTTCGTGGCGGTCAGACAAAATTTTATGTTCCAAAAGACACA
ACAATTGTCACTAAAGGCTGCACTATAAAGGAGGAGGTAAAAGAGAAGTT
TATGTTCAGGATATGACTGCCATATTATTGCACCAAAGACAGGGCAAGCA
gttattttcaaacaaaatctgATTCATGAAGGATGCAAGCTTTCACCAAA
GAGTTACAAGTTTGTAATCAAAACTGATATTATGACTGAGCGGGTTGGAA
AAAAGCTTGGATTCTGCCCTCCTaaggaaaaatttgatgataaTAAGAAG
TGTTTGCAATTATTTCGCCAAGCACAACAATTTGAATTGGGACGTAATTA
TGATAAAGCTAACGAGTGTTATGAACGAAGTCTCTCTTTGAGGTATTGCT
ACCCTCAGAATCTTGATGGTGGTATTTATCAAAAAGGAGAACAATTATTG
ACTGACAATGTTGCAGAATCGCAAGAATCTTTACCTTGCTCTCAAATATC
AACTCTCTCCACCTCATCAAATACAAATCCTTTCTACATTTTTTCTCAAG
AGGTGTGGCATAAAATTATGGTCTACCTGCAACATGACAAAGCTTTACAA
AGCCTTTgtgaagttttttcttttttaagctcAGAGCGAAGGAAGATTTT
GTCCAATCAATTTGTGCCAAAGGTTGACCATCATAGtggaattttcacca
aattccCATTTCAAAATGGAAAGTTTGTTTCTGAAAATCTAGAAAGGTGT
ATTAAAGTTTCAGCAGTTTATTCAATGTGTTTACTTGGTAATGAGCAAAG
AAATTCGCATTATTTGGTGAATTATGATAGAGAAACTAGAAATGCTACTA
CAGCCCAATTGAAAGATCTTCTTTATGGGGTGTTTGCTGAGGAACCTGTC
CAAggaacattcttcaaagtagctCAAAGAAAAGCTAACAAGAATCCGAA
TGAAGATTTGTACCATAGTGTTGATAGGAAATTCATGTCAACACATTTTG
ATCGAGATGATATTGGTATTGatttaaaatctgaaattaGATCACATCTC
ACGATATATGATAAGGACAGTGATGATGAAGAGTACAGCGATTCTGAGGA
AAGTGACCGAGAAGGAAAAACTGATGAATTCACGAAGAAAGATTTCTACA
ATAATGCCAAAGATAAACCATATCCTATAAAAGATTTTCACAATCGTATA
ACCTTAGATGGTTTTGACCACTATTACCGATATTGTAGAAATAAGTTTCC
ACCTAAGTCAGCTGACGAGGCTGATTATTATAAATCATCTGCTTGTTTAT
ATGATTGTATTACGTACCCAGAAGATCAACGAAACGAACTACTGGAAAAA
TTAGTCCCTGAAGACCATTACAACTATCATGTAACCAGGATGAATGTTCC
TACCTCATTAGAACCAAGTTGTGCAATCTTCCGAAAACTAAATAAACCAA
TTGATGATATGAGAGGAGAGAGCTGTGTTTGTGTTTTTGCAGATGTTGGT
AGTAGATTGACTGAAAACTGCTCCACTCATCTTTTTAATAGTATTGTTGC
TAATTTCAGCAAAACGAAACTGGCGGTAGAATTAGCTGCTGATTATTTGA
ACTCAGTTTACCAATTTTCCCAATGGATTGAACATTTTTGTGATGATGGA
GATTTTGAGTTGATAACATACCGTGTAAATATCAGGCAAATGGAAGAAGT
GTTCTCTTCTTTCAATCATGCGTCGTGCCAGTGTATGTTCCCAAATTACA
AAGTTAATGATTATGTCAATTTGTCCAACTATCCAATGTTAGATACCATT
GCTGTTGTCGTGGCAACGAATAAAAAGGATTCAAACGAAGTTTATATCTA
TACGGAGTATGATGGTATCACTGCTCTATGatgaattattttgttttatg
aTCCTATTTGCACATACAAGcttcagtttttttgttttcgtaGCTCACTC
AAATATATATCACAGTAAATAGTTTTATCTCAAAACATTGTAGATAGCAA
GTTtcgaataaaactttttttaacaaactGCCAAAAGGTTGATATCTATC
TTCACCAATCAGTGGAAATAATATCCCTTAAACTATCCAaatataattat
attttattttaaagattattagagcctaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_121:3946..6762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047098 ID=TCONS_00047098|Name=TCONS_00047098|organism=Clytia hemisphaerica|type=transcript|length=2817bp|location=Sequence derived from alignment at scaffold_121:3946..6762+ (Clytia hemisphaerica)
TGAAAAAGGATGCATGGTCTCGAGGTActattttaacttttattttttct
acaAGAGAGAATTTGAATGTCTTTGGGTCTTTTTTAATAatgtatattta
tattttagatAGAAGAAACCAAAATGTACAACAATGTGAAAAACATAATA
AGAAATAACATCACGCCTGACATGATTGGAAAACCATATCTCCTGGCAGA
AACTTCTTTACGTACAACTGATTGGGGAAAAGATTTTCGATTTCTTGATG
ACAAGATGGCAGATGTTAAACCAGACatagaaattgacaaaaattgcaAA
TGATATTTATTTGGTGAAGAATTTGTTGACTGAACCTCAATGCAAAGAAA
TTATTGGTAAAGCTGAAAATCTAAACTTGCAGTTATGTTGCTATGATGAA
ACAAGAAAGAATTCTCGATTAGTTTTATTTGATGAAGAATTTGCAGATTT
TCTTTGGGATAATATTTCCAACCAATTTGAAAAGCAAATCGGAGATGCTC
GTATTCATCCATTTGGCTTTGATGCAGCTAGGGGCCATTGGAAGTTATCT
TGTGTCAATCAAGCAATGCGCCTGAGTGAATAGatatggcggaaaaaaga
aagaattttttgctCCTCATAGAGATGCTTCATTTTGTCCCAATGGTCAC
AAAAGATCGTTGTATACTATGCTCATCTATTTGAATGATGGTTTTCGTGG
CGGTCAGACAAAATTTTATGTTCCAAAAGACACAACAATTGTCACTAAAG
GCTGCACTATAAAGGAGGAGGTAAAAGAGAAGTTTATGTTCAGGATATGA
CTGCCATATTATTGCACCAAAGACAGGGCAAGCAgttattttcaaacaaa
atctgATTCATGAAGGATGCAAGCTTTCACCAAAGAGTTACAAGTTTGTA
ATCAAAACTGATATTATGACTGAGCGGGTTGGAAAAAAGCTTGGATTCTG
CCCTCCTaaggaaaaatttgatgataaTAAGAAGTGTTTGCAATTATTTC
GCCAAGCACAACAATTTGAATTGGGACGTAATTATGATAAAGCTAACGAG
TGTTATGAACGAAGTCTCTCTTTGAGGTATTGCTACCCTCAGAATCTTGA
TGGTGGTATTTATCAAAAAGGAGAACAATTATTGACTGACAATGTTGCAG
AATCGCAAGAATCTTTACCTTGCTCTCAAATATCAACTCTCTCCACCTCA
TCAAATACAAATCCTTTCTACATTTTTTCTCAAGAGGTGTGGCATAAAAT
TATGGTCTACCTGCAACATGACAAAGCTTTACAAAGCCTTTgtgaagttt
tttcttttttaagctcAGAGCGAAGGAAGATTTTGTCCAATCAATTTGTG
CCAAAGGTTGACCATCATAGtggaattttcaccaaattccCATTTCAAAA
TGGAAAGTTTGTTTCTGAAAATCTAGAAAGGTGTATTAAAGTTTCAGCAG
TTTATTCAATGTGTTTACTTGGTAATGAGCAAAGAAATTCGCATTATTTG
GTGAATTATGATAGAGAAACTAGAAATGCTACTACAGCCCAATTGAAAGA
TCTTCTTTATGGGGTGTTTGCTGAGGAACCTGTCCAAggaacattcttca
aagtagctCAAAGAAAAGCTAACAAGAATCCGAATGAAGATTTGTACCAT
AGTGTTGATAGGAAATTCATGTCAACACATTTTGATCGAGATGATATTGG
TATTGatttaaaatctgaaattaGATCACATCTCACGATATATGATAAGG
ACAGTGATGATGAAGAGTACAGCGATTCTGAGGAAAGTGACCGAGAAGGA
AAAACTGATGAATTCACGAAGAAAGATTTCTACAATAATGCCAAAGATAA
ACCATATCCTATAAAAGATTTTCACAATCGTATAACCTTAGATGGTTTTG
ACCACTATTACCGATATTGTAGAAATAAGTTTCCACCTAAGTCAGCTGAC
GAGGCTGATTATTATAAATCATCTGCTTGTTTATATGATTGTATTACGTA
CCCAGAAGATCAACGAAACGAACTACTGGAAAAATTAGTCCCTGAAGACC
ATTACAACTATCATGTAACCAGGATGAATGTTCCTACCTCATTAGAACCA
AGTTGTGCAATCTTCCGAAAACTAAATAAACCAATTGATGATATGAGAGG
AGAGAGCTGTGTTTGTGTTTTTGCAGATGTTGGTAGTAGATTGACTGAAA
ACTGCTCCACTCATCTTTTTAATAGTATTGTTGCTAATTTCAGCAAAACG
AAACTGGCGGTAGAATTAGCTGCTGATTATTTGAACTCAGTTTACCAATT
TTCCCAATGGATTGAACATTTTTGTGATGATGGAGATTTTGAGTTGATAA
CATACCGTGTAAATATCAGGCAAATGGAAGAAGTGTTCTCTTCTTTCAAT
CATGCGTCGTGCCAGTGTATGTTCCCAAATTACAAAGTTAATGATTATGT
CAATTTGTCCAACTATCCAATGTTAGATACCATTGCTGTTGTCGTGGCAA
CGAATAAAAAGGATTCAAACGAAGTTTATATCTATACGGAGTATGATGGT
ATCACTGCTCTATGatgaattattttgttttatgaTCCTATTTGCACATA
CAAGcttcagtttttttgttttcgtaGCTCACTCAAATATATATCACAGT
AAATAGTTTTATCTCAAAACATTGTAGATAGCAAGTTtcgaataaaactt
tttttaacaaactGCCAAAAGGTTGATATCTATCTTCACCAATCAGTGGA
AATAATATCCCTTAAACTATCCAaatataattatattttattttaaagat
tattagagcctaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047098-exon-scaffold_121-1491911889:3946..3969 | TCONS_00047098-exon-scaffold_121-1491911889:3946..3969 | Clytia hemisphaerica | exon |
| TCONS_00047098-exon-scaffold_121-1510915933:3946..3969 | TCONS_00047098-exon-scaffold_121-1510915933:3946..3969 | Clytia hemisphaerica | exon |
| TCONS_00047098-exon-scaffold_121-1575043694:3946..3969 | TCONS_00047098-exon-scaffold_121-1575043694:3946..3969 | Clytia hemisphaerica | exon |
| TCONS_00047098-exon-scaffold_121-1491911889:4054..6762 | TCONS_00047098-exon-scaffold_121-1491911889:4054..6762 | Clytia hemisphaerica | exon |
| TCONS_00047098-exon-scaffold_121-1510915933:4054..6762 | TCONS_00047098-exon-scaffold_121-1510915933:4054..6762 | Clytia hemisphaerica | exon |
| TCONS_00047098-exon-scaffold_121-1575043694:4054..6762 | TCONS_00047098-exon-scaffold_121-1575043694:4054..6762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:3946..6762 + |
Blast
The following BLAST results are available for this feature:
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