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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047105 ID=TCONS_00047105|Name=TCONS_00047105|organism=Clytia hemisphaerica|type=transcript|length=4259bp
taaagagatagcccaaaatcggctttttcgcccgaactttaaatctcgaa
aaacgtcaaaataaccggaattctcaatatatttcttgaaagattgtagc
AGGTCGCCAGGTGACATAATTTAGTGTTACTGTTTGAGATTAAGTTTTAT
ACCCTccaaggatcatctgtgccaaatttcatgcttttatcacgaactga
agtatttttgtgccaACAGACCTCACTATTGCAAAAGTTTTGTCATTGAT
AACGTTGTGAAAATTTAAACAGGCTTAAAAGCTTATTATTCTAATCTAAA
CCTCGAAACgataattatatttttgtttaatcattaaaaataaaatcaaa
atcacagaagttttttggaaaaacatgatcacccttcatatattcatcaa
agaaaataaaccaTCCTTTCTTGGTTCTCATTTTCATTACAACGATCCAA
ACACCGAATTTTAGGAGCCGCAGTAAATTGTACCCAACCACAACGACACC
GGGTACTAAGAGCAAGATCTGAACCAATACACCAAAcacaaaattagggc
ttgagtTGTCATTCATTTTGAGGACAGACATCTTTTGTTTGCCATTACTA
ATGATTCCAATAGCGCAGATTAGGAATAGGATAAAGGTATCGAACCCGTT
GAGGTACATTTTCTGGCCGTCAATTTCATCTTTGTAGGGTTTATTGGCTG
CGAAGATGACGAGAATGCCAATCGAAAGCACGGTTAGAATGACCAAACTC
AACTGCTTGTGTGGGTTGAAAGCgactaagaacattgaaatAAGATCGAT
AACGATTCTTATTACAAGATAGTAAACAGCAAATCCTGTACAGTCGTCTC
TGAACGGTTCCTTGAAGACGTCCGTAACATGTCGATTTGCAAACACCTTT
TTGATACTTCTGCACGAGCATTTGTCAAGGCAATCACAACAAGATCTATA
CCGCTTCATTTTTCGATAGAATCTATCATCGATAACAAAAGGATACATGC
TAAACATGATAAGCAGAAGGGACGCAATAATGTAATAAGGCCAAAACCAA
TCTGATATTTGTTTAAACTCCGCATAATTGAACAATCGAAATTGGTCATC
AATATTGACAAACTTCAGGGCATCGAAACAAACTTTGACTATAGAGCCGT
AGGTgtacaaaatgataaaaacggCTGCTCTGTACCCATTCTCTCgttta
aaaacattcaagaAAGTTCGTGTTTTTATACTTTGCGGTTGTTGGTCGCC
ATTTTCATCGACATTTTCAACGGGTGTGTTTTTCTTTGATAACAAACGCC
CTCTCAAGTACGAGCAAAAGCAAACACAAATAAAAAGGTTGACAAAAGTA
ACCAATAGCACAGCCAAGTTTAGCATTGGTTTATAAAAGTCTGTGAAGTG
TTCACCAAGACAGGCGATCCCTTTGTTGCTACCAATTCCGTCAAAATTCA
TAACCTCAATGAGAAACGCAATGAGGGGTCCAATATACGAATCATTCATG
GAAAGTTGAGTTGTTGTAAGGAAATTACCGATGActtgataaaagaaaaa
tacGGAGTTTAAGTAGCAAGTATAAACGTCAATATTCGATAAAAGcacaa
ttaaaacaaaaatcaaatcgGCAACATAAAGTCCAATAATTGTAAAAGCA
AGGCTCAATTTATCTACACCACATTCGTCCACTGGCAAACATTTTTCGGA
GCCCCATTGGAGGGTTGTTCCATTTTTGCACGAAGAACATAATGTAGAAT
TTTCATCTCTGTTTTTTCCGCATTGTGTTTTATTTGGATCGTATTTACAA
TAAACCCAATTTTCGTCTTCACGGTCGCATAATCGACAGTAATGATTTGG
ACATTGAATTCCTTTTTCGAGGTCATTAACGATCTCTTGATGGGTCGGTT
TAAACCAAAGATTGGCATAAGTATAAATGTCATCTCCGATACACAATACT
ATCCCCCTCGCTTCGTTTGTCTTCGGGTTACATTGGCATACCCCGTCTTC
CAATACTTTAACAAATGGACAATGGTCAAAACGTCCTCTCTTTTGTTTAG
GTTGAGCAGCGTTAGCATTCTCTAAAGAAAAGACTAAATCGAATAGTGCT
GGTTTGTGACTTATTTTGAGTGTCAGTTCAATAGAGTTGTTACTGACAAT
AAATGctttgtaattatttttctccTCGACCTGCACACCTTCGGTCTTAG
AAATAATATCCATGTTGACAGTCGCCGATACTGGCTGTCCGATCTCATCG
CGAAGTTCTATGGGCACGGTCATTGTTGTTCCAGGGTACATATTCTGCCA
TACTTTATTGTCTGGGATGTAAATTTCAACCGGTTCTGTAGCTATAGAGT
TCTTTGAAGTGAAGTTAAACTTATCTTTATCGTTGAAAAAATCAAGTAGA
TCGGCCGATTCTGACGATGACGAGCATGTTCGTAGGCTGGTTGTAAAGAT
GTCGTTCTCATGCCCAGAGAACAGGACCGCTTTGTTATTATTGAAACGTA
CTCGAGGCTTCCGTCCATTGACTGCTTGTTCCATAAATTTAAAGAAACAA
GGGTAGACTGGTGTAAGATAGGTTTCCCATTCACCGATTAATGGTCCGTT
AAAATCCACGGAAATTCCGGCACCTTTGTTTGCATTATTACTATCAATGT
CTAAGAAAGCGGTGGTAGATTCAATAATGATTTGTGATCTTCCATGAAGT
GCCATTCCACCTCCATTAATACCTTTGTTTGAATATAAATCAAGGTTTCC
TCGGAGATGAAGGTCTGAGAAATCAAGTACGATACCAGTCGCATGGTTTT
GAAATAGATAAAATGCATCCTCACTTGATGTGCTGGTCACCAATAGATGC
GACTGGTAGGCGTAGATAGCACCAAAACCAAGAGTTCCGTCTTTCGAAGC
TGTACAACTGTTGTCTATCAATCCGACTTCACCAAAGAATTGAACATAAA
CGTTATCAAAAAAGAGTGCAGATccaattttggcgttattatgACTGATT
TGGCTTTTTTTTCCTCcgtaaaagaaagtttttactAAAGAAGGATCAAA
TTGACTACGATGAATACCAGTTGATTGTTGTTTTCGTTGGCAAAATGCAC
CACCGTAACCATTGAGAGCCGTATTGGAAGATAACTCGTTTAAATTGTCC
ACAGTAAAACTATTATCATTCGTATGCGAGTATTCGACTGTGAAATAGAA
GAAAGCACCACCAGAGAAAACTGCTGTATTGTGTGTACAGAAAATCTCTT
TTACCAAAATACTGTTATTGGAGGAATCGCTTCCGTGCTTCACGTAAATA
GCACCCCCGTACAGTGCTTTGTTGTGAGTGATCCAAGTATCGTCATTTAT
ATCATCGTTTATAATATTGATTTTGTTACCCGATGTTTTGTGGAAAGATA
AACTGATAGCTCCTCCATATCCGAATGGTTCATATGGTTTCGATTCTTTC
TCCGGAGCCGTTTCATCCGGGTAACCAGTGAGgtttttcaagttggtatc
acTGATGGTGAAAAATGCTCCTTTTAATGTTTTACGAGATATATGTCGAA
ATAAAACACCTCCCCCGTAAATTGTTCCTTTTGATGACTtctcaaattga
aaataaactgGCCTGTTGCTTTGTAATGTTGATTTGGTCAACGAAATATG
CCCGATACAGTCAGTCATTGAGATACCATAGCCGTCATAGGAGTTCATGT
CGATGCTATTGAGGGTGATATCTGTCACGTTTTCAAAGTGGAATACAGCT
GTGATATCAACACTTAATAGTGTTTTGGAATTCATATAAAATGGATCGTT
ATGTATATAAGTAGATGTTTGAGCTCCTCCGCAAGGACCATCGAATTTGA
GGTTTTCAATCTCGATGTTATCTCCGtaaatgaaagacaaaaattGACCA
GGATTAGAACCACACTGAAAGGTGAACATGTCGTGAGAagtgattttcaa
ttttcgtgCGTTGGAAACGATAGCATTTGTAAAATGATGGTTAGCATCTT
CGGTGATATTGACGCAAGTATCTGTTAAAGGTTTCTTTGGGTAAATGGCA
AATGCAGCTTCGAGGGAATGACATTGCCAACGATTGGGAGTTGATGGATC
TTTCTGGCAATCGGTAACGTTTGAAACTATGTCTATGATTGTGTTGAAAC
CATCACAATTCGATGTTTCTTGAGCACGAGATGAAGATATACACCATACG
GTTAAAAccagtaaaaatatttcactttttaaattcatttttctttagCA
TCTTAAACG Run BLAST on NCBI transcript from alignment at scaffold_121:50904..55162+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047105 ID=TCONS_00047105|Name=TCONS_00047105|organism=Clytia hemisphaerica|type=transcript|length=4259bp|location=Sequence derived from alignment at scaffold_121:50904..55162+ (Clytia hemisphaerica)
taaagagatagcccaaaatcggctttttcgcccgaactttaaatctcgaa
aaacgtcaaaataaccggaattctcaatatatttcttgaaagattgtagc
AGGTCGCCAGGTGACATAATTTAGTGTTACTGTTTGAGATTAAGTTTTAT
ACCCTccaaggatcatctgtgccaaatttcatgcttttatcacgaactga
agtatttttgtgccaACAGACCTCACTATTGCAAAAGTTTTGTCATTGAT
AACGTTGTGAAAATTTAAACAGGCTTAAAAGCTTATTATTCTAATCTAAA
CCTCGAAACgataattatatttttgtttaatcattaaaaataaaatcaaa
atcacagaagttttttggaaaaacatgatcacccttcatatattcatcaa
agaaaataaaccaTCCTTTCTTGGTTCTCATTTTCATTACAACGATCCAA
ACACCGAATTTTAGGAGCCGCAGTAAATTGTACCCAACCACAACGACACC
GGGTACTAAGAGCAAGATCTGAACCAATACACCAAAcacaaaattagggc
ttgagtTGTCATTCATTTTGAGGACAGACATCTTTTGTTTGCCATTACTA
ATGATTCCAATAGCGCAGATTAGGAATAGGATAAAGGTATCGAACCCGTT
GAGGTACATTTTCTGGCCGTCAATTTCATCTTTGTAGGGTTTATTGGCTG
CGAAGATGACGAGAATGCCAATCGAAAGCACGGTTAGAATGACCAAACTC
AACTGCTTGTGTGGGTTGAAAGCgactaagaacattgaaatAAGATCGAT
AACGATTCTTATTACAAGATAGTAAACAGCAAATCCTGTACAGTCGTCTC
TGAACGGTTCCTTGAAGACGTCCGTAACATGTCGATTTGCAAACACCTTT
TTGATACTTCTGCACGAGCATTTGTCAAGGCAATCACAACAAGATCTATA
CCGCTTCATTTTTCGATAGAATCTATCATCGATAACAAAAGGATACATGC
TAAACATGATAAGCAGAAGGGACGCAATAATGTAATAAGGCCAAAACCAA
TCTGATATTTGTTTAAACTCCGCATAATTGAACAATCGAAATTGGTCATC
AATATTGACAAACTTCAGGGCATCGAAACAAACTTTGACTATAGAGCCGT
AGGTgtacaaaatgataaaaacggCTGCTCTGTACCCATTCTCTCgttta
aaaacattcaagaAAGTTCGTGTTTTTATACTTTGCGGTTGTTGGTCGCC
ATTTTCATCGACATTTTCAACGGGTGTGTTTTTCTTTGATAACAAACGCC
CTCTCAAGTACGAGCAAAAGCAAACACAAATAAAAAGGTTGACAAAAGTA
ACCAATAGCACAGCCAAGTTTAGCATTGGTTTATAAAAGTCTGTGAAGTG
TTCACCAAGACAGGCGATCCCTTTGTTGCTACCAATTCCGTCAAAATTCA
TAACCTCAATGAGAAACGCAATGAGGGGTCCAATATACGAATCATTCATG
GAAAGTTGAGTTGTTGTAAGGAAATTACCGATGActtgataaaagaaaaa
tacGGAGTTTAAGTAGCAAGTATAAACGTCAATATTCGATAAAAGcacaa
ttaaaacaaaaatcaaatcgGCAACATAAAGTCCAATAATTGTAAAAGCA
AGGCTCAATTTATCTACACCACATTCGTCCACTGGCAAACATTTTTCGGA
GCCCCATTGGAGGGTTGTTCCATTTTTGCACGAAGAACATAATGTAGAAT
TTTCATCTCTGTTTTTTCCGCATTGTGTTTTATTTGGATCGTATTTACAA
TAAACCCAATTTTCGTCTTCACGGTCGCATAATCGACAGTAATGATTTGG
ACATTGAATTCCTTTTTCGAGGTCATTAACGATCTCTTGATGGGTCGGTT
TAAACCAAAGATTGGCATAAGTATAAATGTCATCTCCGATACACAATACT
ATCCCCCTCGCTTCGTTTGTCTTCGGGTTACATTGGCATACCCCGTCTTC
CAATACTTTAACAAATGGACAATGGTCAAAACGTCCTCTCTTTTGTTTAG
GTTGAGCAGCGTTAGCATTCTCTAAAGAAAAGACTAAATCGAATAGTGCT
GGTTTGTGACTTATTTTGAGTGTCAGTTCAATAGAGTTGTTACTGACAAT
AAATGctttgtaattatttttctccTCGACCTGCACACCTTCGGTCTTAG
AAATAATATCCATGTTGACAGTCGCCGATACTGGCTGTCCGATCTCATCG
CGAAGTTCTATGGGCACGGTCATTGTTGTTCCAGGGTACATATTCTGCCA
TACTTTATTGTCTGGGATGTAAATTTCAACCGGTTCTGTAGCTATAGAGT
TCTTTGAAGTGAAGTTAAACTTATCTTTATCGTTGAAAAAATCAAGTAGA
TCGGCCGATTCTGACGATGACGAGCATGTTCGTAGGCTGGTTGTAAAGAT
GTCGTTCTCATGCCCAGAGAACAGGACCGCTTTGTTATTATTGAAACGTA
CTCGAGGCTTCCGTCCATTGACTGCTTGTTCCATAAATTTAAAGAAACAA
GGGTAGACTGGTGTAAGATAGGTTTCCCATTCACCGATTAATGGTCCGTT
AAAATCCACGGAAATTCCGGCACCTTTGTTTGCATTATTACTATCAATGT
CTAAGAAAGCGGTGGTAGATTCAATAATGATTTGTGATCTTCCATGAAGT
GCCATTCCACCTCCATTAATACCTTTGTTTGAATATAAATCAAGGTTTCC
TCGGAGATGAAGGTCTGAGAAATCAAGTACGATACCAGTCGCATGGTTTT
GAAATAGATAAAATGCATCCTCACTTGATGTGCTGGTCACCAATAGATGC
GACTGGTAGGCGTAGATAGCACCAAAACCAAGAGTTCCGTCTTTCGAAGC
TGTACAACTGTTGTCTATCAATCCGACTTCACCAAAGAATTGAACATAAA
CGTTATCAAAAAAGAGTGCAGATccaattttggcgttattatgACTGATT
TGGCTTTTTTTTCCTCcgtaaaagaaagtttttactAAAGAAGGATCAAA
TTGACTACGATGAATACCAGTTGATTGTTGTTTTCGTTGGCAAAATGCAC
CACCGTAACCATTGAGAGCCGTATTGGAAGATAACTCGTTTAAATTGTCC
ACAGTAAAACTATTATCATTCGTATGCGAGTATTCGACTGTGAAATAGAA
GAAAGCACCACCAGAGAAAACTGCTGTATTGTGTGTACAGAAAATCTCTT
TTACCAAAATACTGTTATTGGAGGAATCGCTTCCGTGCTTCACGTAAATA
GCACCCCCGTACAGTGCTTTGTTGTGAGTGATCCAAGTATCGTCATTTAT
ATCATCGTTTATAATATTGATTTTGTTACCCGATGTTTTGTGGAAAGATA
AACTGATAGCTCCTCCATATCCGAATGGTTCATATGGTTTCGATTCTTTC
TCCGGAGCCGTTTCATCCGGGTAACCAGTGAGgtttttcaagttggtatc
acTGATGGTGAAAAATGCTCCTTTTAATGTTTTACGAGATATATGTCGAA
ATAAAACACCTCCCCCGTAAATTGTTCCTTTTGATGACTtctcaaattga
aaataaactgGCCTGTTGCTTTGTAATGTTGATTTGGTCAACGAAATATG
CCCGATACAGTCAGTCATTGAGATACCATAGCCGTCATAGGAGTTCATGT
CGATGCTATTGAGGGTGATATCTGTCACGTTTTCAAAGTGGAATACAGCT
GTGATATCAACACTTAATAGTGTTTTGGAATTCATATAAAATGGATCGTT
ATGTATATAAGTAGATGTTTGAGCTCCTCCGCAAGGACCATCGAATTTGA
GGTTTTCAATCTCGATGTTATCTCCGtaaatgaaagacaaaaattGACCA
GGATTAGAACCACACTGAAAGGTGAACATGTCGTGAGAagtgattttcaa
ttttcgtgCGTTGGAAACGATAGCATTTGTAAAATGATGGTTAGCATCTT
CGGTGATATTGACGCAAGTATCTGTTAAAGGTTTCTTTGGGTAAATGGCA
AATGCAGCTTCGAGGGAATGACATTGCCAACGATTGGGAGTTGATGGATC
TTTCTGGCAATCGGTAACGTTTGAAACTATGTCTATGATTGTGTTGAAAC
CATCACAATTCGATGTTTCTTGAGCACGAGATGAAGATATACACCATACG
GTTAAAAccagtaaaaatatttcactttttaaattcatttttctttagCA
TCTTAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047105-exon-scaffold_121-1491911889:50904..55162 | TCONS_00047105-exon-scaffold_121-1491911889:50904..55162 | Clytia hemisphaerica | exon |
| TCONS_00047105-exon-scaffold_121-1510915933:50904..55162 | TCONS_00047105-exon-scaffold_121-1510915933:50904..55162 | Clytia hemisphaerica | exon |
| TCONS_00047105-exon-scaffold_121-1575043694:50904..55162 | TCONS_00047105-exon-scaffold_121-1575043694:50904..55162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:50904..55162 + |
Blast
The following BLAST results are available for this feature:
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