TCONS_00047107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047107
Unique NameTCONS_00047107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047107 ID=TCONS_00047107|Name=TCONS_00047107|organism=Clytia hemisphaerica|type=transcript|length=806bp
TTCTCCGGAGCCGTTTCATCCGGGTAACCAGTGAGgtttttcaagttggt
atcacTGATGGTGAAAAATGCTCCTTTTAATGTTTTACGAGATATATGTC
GAAATAAAACACCTCCCCCGTAAATTGTTCCTTTTGATGACTtctcaaat
tgaaaataaactgGCCTGTTGCTTTGTAATGTTGATTTGGTCAACGAAAT
ATGCCCGATACAGTCAGTCATTGAGATACCATAGCCGTCATAGGAGTTCA
TGTCAATGTTATTAAGGGTGATATCTGTCACGTTTTCAAAGTGGAATACA
GCTGTGATATGAACACTTAATAGTGTTTGGGAATTCATATAAAATGGATC
GTTATGTATATAAGTAGATGTTTGAGCTCCTCCGCAAGAACCATCGAATT
TGAGGTTTTCGATCTCGATGTTATCTCCGtaaatgaaagacaaaaattGA
CCAGGACCACACTGAAAGGTGAACATGTCGTGAGAagtgattttcaattt
tcgtgCGTTGGAAACGATAGCATTTGTAAAATGATGGTTAGCATCTTTGG
TGATATGGATGCAAGTATCTGTTAAAGGTTTCTTTGGGTAAATGGCAAAT
GCAGCTTCGAGGGAATGACATTGCCAACGATTGGGAGTTGATGGATCTTT
CTGGCAATCGGTAACGTTTGAAACTATGTCTATGATTGTGTTGAAACCAT
CACAATTCGATGTTTCTTGAGCACGAGATGAAGATATACACCATACGGTT
AAAAccagtaaaaatatttcactttttaaattcatttttctttagCATCT
TAAACG
Run BLAST on NCBI

transcript from alignment at scaffold_121:55275..56080+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047107 ID=TCONS_00047107|Name=TCONS_00047107|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at scaffold_121:55275..56080+ (Clytia hemisphaerica)
TTCTCCGGAGCCGTTTCATCCGGGTAACCAGTGAGgtttttcaagttggt
atcacTGATGGTGAAAAATGCTCCTTTTAATGTTTTACGAGATATATGTC
GAAATAAAACACCTCCCCCGTAAATTGTTCCTTTTGATGACTtctcaaat
tgaaaataaactgGCCTGTTGCTTTGTAATGTTGATTTGGTCAACGAAAT
ATGCCCGATACAGTCAGTCATTGAGATACCATAGCCGTCATAGGAGTTCA
TGTCAATGTTATTAAGGGTGATATCTGTCACGTTTTCAAAGTGGAATACA
GCTGTGATATGAACACTTAATAGTGTTTGGGAATTCATATAAAATGGATC
GTTATGTATATAAGTAGATGTTTGAGCTCCTCCGCAAGAACCATCGAATT
TGAGGTTTTCGATCTCGATGTTATCTCCGtaaatgaaagacaaaaattGA
CCAGGACCACACTGAAAGGTGAACATGTCGTGAGAagtgattttcaattt
tcgtgCGTTGGAAACGATAGCATTTGTAAAATGATGGTTAGCATCTTTGG
TGATATGGATGCAAGTATCTGTTAAAGGTTTCTTTGGGTAAATGGCAAAT
GCAGCTTCGAGGGAATGACATTGCCAACGATTGGGAGTTGATGGATCTTT
CTGGCAATCGGTAACGTTTGAAACTATGTCTATGATTGTGTTGAAACCAT
CACAATTCGATGTTTCTTGAGCACGAGATGAAGATATACACCATACGGTT
AAAAccagtaaaaatatttcactttttaaattcatttttctttagCATCT
TAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030032XLOC_030032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047107-exon-scaffold_121-1491911889:55275..56080TCONS_00047107-exon-scaffold_121-1491911889:55275..56080Clytia hemisphaericaexon
TCONS_00047107-exon-scaffold_121-1510915933:55275..56080TCONS_00047107-exon-scaffold_121-1510915933:55275..56080Clytia hemisphaericaexon
TCONS_00047107-exon-scaffold_121-1575043694:55275..56080TCONS_00047107-exon-scaffold_121-1575043694:55275..56080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_121supercontigscaffold_121:55275..56080 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205042	0.434404	0.276393	0.264007	0.348215	0.573776	0.483603	1.25389	0.175551	0.969775	0.364873	0	0.83562	1.13453	1.85248	1.38285	1.03693	1.06485	1.23057	1.31707	0.609678	0.95228	0.444642	1.04361	2.28211	0.9359	0.640445	1.46043	0.946169	1.2148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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