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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047125 ID=TCONS_00047125|Name=TCONS_00047125|organism=Clytia hemisphaerica|type=transcript|length=4866bpRun BLAST on NCBI protein sequence of TCONS_00047125-protein >TCONS_00047125-protein ID=TCONS_00047125-protein|Name=TCONS_00047125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp MSSSVKHTLERLEEQQKQRLLKKKKKEENEKAEVAVKNVCKCSVEDQYDNRun BLAST on NCBI transcript from alignment at scaffold_122:159162..171915+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047125 ID=TCONS_00047125|Name=TCONS_00047125|organism=Clytia hemisphaerica|type=transcript|length=12754bp|location=Sequence derived from alignment at scaffold_122:159162..171915+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_122:159162..171915+ >TCONS_00047125 ID=TCONS_00047125|Name=TCONS_00047125|organism=Clytia hemisphaerica|type=CDS|length=24414bp|location=Sequence derived from alignment at scaffold_122:159162..171915+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047125 vs. Swiss-Prot (Human)
Match: DHCR7 (7-dehydrocholesterol reductase OS=Homo sapiens GN=DHCR7 PE=1 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 1.494e-62 Identity = 128/348 (36.78%), Postives = 199/348 (57.18%), Query Frame = -1
Query: 3415 EGPLTAKGNTPVYKDNGFSCYVITMAAFGGLTYVMKTKYGMTPTVVFDHYGEVLAWLSLYSLFICVLLYLKGRLAPSTS-DNGSSGNFIFDYYWGTELYPRIFG-IDIKVFTNCRFGLTVWALVISICFLKSYELYGFV-DSMFVCWLLQIIYLTKFFWWEGGYMRTMDISVDRAGFYICWGCLVYVPGFYTLCSLYMVAHPVKLGIELTAFFIVAGAASIFINYQADYQRQVFRETGGKCLIWGRKPDMIWAKYRTEAGQDKLNPLLLSGWWGVARHFHYLPELALSFFWSVPALFDHLLPFSYFIFLTILLVHRTFRDDVKCQKKYGRYWQQYCKKVPYKIVPYIF 4449
EG +T G Y+ NG +++T + +++ +PT++FD++ +L ++ + +KG P+++ D +GNF ++Y G E PRI D K+F N R G+ W L+ K EL+ V ++M + +LQ IY+ FFW E Y++T+DI D G+Y+ WG V++P YTL LY+V HPV+L ++ G +I A++Q+ +FR T G+CLIWGRKP +I Y + GQ + LL+SG+WGVARHF+Y+ +L S + + HLLP+ Y I++ ILL HR RD+ +C KYGR W++Y VPY+++P IF
Sbjct: 131 EGAVTPAGVVNKYQINGLQAWLLTHLLWFANAHLLSW---FSPTIIFDNWIPLLWCANILGYAVSTFAMVKGYFFPTSARDCKFTGNFFYNYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSFAAKQRELHSHVTNAMVLVNVLQAIYVIDFFWNETWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLSTPHAVGVLLLGLVGYYIFRVANHQKDLFRRTDGRCLIWGRKPKVIECSYTSADGQRHHSKLLVSGFWGVARHFNYVGDLMGSLAYCLACGGGHLLPYFYIIYMAILLTHRCLRDEHRCASKYGRDWERYTAAVPYRLLPGIF 475 The following BLAST results are available for this feature:
BLAST of TCONS_00047125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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