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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047204 ID=TCONS_00047204|Name=TCONS_00047204|organism=Clytia hemisphaerica|type=transcript|length=2219bp
GAAAGTTATTGTGCGAAACAAGAGGAGCGAGAATGAGAGAGAATAAAAAA
TGGCCAACATCACACCTTTGCATTGTGTTGAATCTTGTAAGGTGTCAAAG
CATAACATGTTTTCATTCTAAATactcaaatatttcttttctagCAAGAT
AATTATTCAACAACCTAAGTCAACTGAAAGAGAAAGTcgttaaaaaaaag
attttctttatatattatgttattattatttttccaacTGTCTTGAGTGT
TGTGGAGTTTTCTCAAATGAATTCTCTGGATCTTGATGttcgaaaaaaat
gaaataaaaagattgaTGTGGCTTCCACAAGACAGTTAAACAAGAAAATC
AAAGTCTTCTACAAGGAGTGCATAACACGGAAAATAAATCTTCACACATA
TATTACATAACAACTTCTAAACCTTTTTTTGCACACACAGCACAGAAATG
ACTGGTGAACACACTTCAGTAATCTACGGAACTCCATATCCTTACCGTCT
GTTTGTGGGATGTTTACCACTGGAGGCTACAGCTGAAGAACTTGGTACAT
TCTTCTCGCAGTACGGAAACGTCGTTGAAGCCAAGGTTGTCCTCAATGAG
AATGGTGTTTCCAAACGGTTTGGGTTTGTCACTTTCACAAATAAAGATGA
CGTGACGGATTTGATTAAAAACCGcactgttgaatttcaaaagaaatgga
TCAACGTTGGACCGGCTGTTAAGAAAAATCTTGAAAATCAGACCAGCGTT
GGTGTTGGTGGTGGTGATAATCCATCGAAGCCTCGTTCCGCGACCTCAGT
AACCGTCGTCACAAAGAAATCACCACCTACTACAACAATGGCACAACAAC
AGCAACACGGAAACACAAAACAATCGTTCTATCGTGGTCCACAACATATT
CCAAAAACTGTCATTCGAAAATCGCCCACTGAACAACATTTTGAACCAGA
TTTTATGCGTGCTCTCACCAACGCTAACGCATACCAACAACACAACCAAC
ATTCAGAATTTTGTCCGCGATATCATCAAAAGATTGATGACTCATTCAGC
TCAACATGGGGAATCTCCAACAAGAAGACTTCCTATTGGTCTCAACCGCC
CAAACGTCAAATGCAATCGAATGGCTCGTCTCGATCATCCAGTGTTGATG
CCATGGAAACTGCATTCAAAGCACCTCTCCTTCCCTTCGAAGAGGATGCA
TCGCAAAGCCAATTCATgcctaaaatcgatttttcatctttcgatttttc
ttttgataacaATCCCTGGTCCCGACTCGGTGGATGCGGCCCCATCGCGC
CACCACCTGGTTTTCCTCAGCACAGCAACTGGATTCAAAAGAAGTAAGTG
CCGAATGGTTTCTATTTTAAAATAATGGTACAACATCAAAGACCGTCAGG
CTTTCCTAAAAAAGAAATGCTTTCAGCAATTCCATTTCACGGATTATTTT
TACAGTTttcgttttattatttttttggttcaCTCACACATGTCATGGGA
CGCTTGTGTCTGGCCTGTTCtgttttttggatatttttaagttgcagatt
ttatttattgattttaaaCTAATATAGTGTGTTTACCCTTGTACATATAA
CCAACTCTAACcccttgttttattttttataataattatataCCTTAGAA
GATTTTTTGTTAACGTTTGGAAAAAGTGAAgattttttagataatttaag
GTTCAGAAGTTTTACGTTCTTTATATGGTTTTATTATCGTTTTATATAGT
AATTAGTCCAAGTTTCAACATAAGGCAAGTTTACTactaatattttaaaa
tttttaatggTTCCAGCTGGGTTTTAACTACTCGAAAGAAAGCTCTGaaa
gtcaaaaaagaatttgaaattttacttcTCACCTTACCTTAATGAAATAA
TTCTCTTTAATAGACTATACTTGGCTTAACCGATTTTAGTGTTTATGTTT
TAGCAATTtagttccattttttgaaactattttatttcttaaTGTTTGTA
CATTTATGCAAGACTGTTTACCGTTATTAGGACTTTTTTACCTTaggttt
aaaatatattgatgtTACTATTGAAGAATTGTGAGTTCGTATTTTCTGCC
CAAGTAATTTAGTATGCCACAACTTTATATAAAGATAGCTGATATGATTT
GAAGTGAATCGGATTAAAAATGTATAAGCATAGCTTGATAAccgttcaaa
taaaaaaacgttATTTTCC Run BLAST on NCBI protein sequence of boule-like-1b >TCONS_00047204-protein ID=TCONS_00047204-protein|Name=boule-like-1b|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MTGEHTSVIYGTPYPYRLFVGCLPLEATAEELGTFFSQYGNVVEAKVVLN
ENGVSKRFGFVTFTNKDDVTDLIKNRTVEFQKKWINVGPAVKKNLENQTS
VGVGGGDNPSKPRSATSVTVVTKKSPPTTTMAQQQQHGNTKQSFYRGPQH
IPKTVIRKSPTEQHFEPDFMRALTNANAYQQHNQHSEFCPRYHQKIDDSF
SSTWGISNKKTSYWSQPPKRQMQSNGSSRSSSVDAMETAFKAPLLPFEED
ASQSQFMPKIDFSSFDFSFDNNPWSRLGGCGPIAPPPGFPQHSNWIQKK Run BLAST on NCBI transcript from alignment at scaffold_123:305815..310246+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047204 ID=TCONS_00047204|Name=TCONS_00047204|organism=Clytia hemisphaerica|type=transcript|length=4432bp|location=Sequence derived from alignment at scaffold_123:305815..310246+ (Clytia hemisphaerica)
GAAAGTTATTGTGCGAAACAAGAGGAGCGAGAATGAGAGAGAATAAAAAA
TGGCCAACATCACACCTTTGCATTGTGTTGAATCTTGTAAGGTGTCAAAG
CATAACATGTTTTCATTCTAAATactcaaatatttcttttctagCAAGAT
AATTATTCAACAACCTAAGTCAACTGAAAGAGAAAGTcgttaaaaaaaag
attttctttatatattatgttattattatttttccaacTGTCTTGAGTGT
TGTGGAGTTTTCTCAAATGAATTCTCTGGATCTTGATGttcgaaaaaaat
gaaataaaaagattgaTGTGGCTTCCACAAGACAGTTAAACAAGAAAATC
AAAGTCTTCTACAAGGAGTGCATAACACGGAAAATAAATCTTCACACATA
TATTACATAACAACTTCGAAACCTTTTTTGCACACACAGCACAGAAATGG
TANCAAGAGAATCAGAGTCTTCTACAAGGAGTGCATAACACGGAAAATAA
ATCTTCACACATATATTACATAACAACTTCTAAACCTTTTTTTGCACACA
CAGCACAGAAATGGTAAGTTTTTCTGcatctttttgtcatttttttgtga
gaaataaaaatattgcaggAAATTGAATTCACATTGCTATCATTTCCTGA
TTTCAATCCGGATTTTAAGCAACGAAGTTCAATTTTCTGCAGTGTTTTTT
TGTGCACTAAACTGATCTCCAATTTTATAATCTATTTATTAGTTACATAT
TGACTTActgtttatagaacaatttaATAGGAGTATTGAGGCTCGCAATG
CCAaaagtagcctggatatccaagctcaaaatttaagaaaaaacaaaatt
tacctcaacatacaaagttcttaaattatagagcttggtctccctagaga
atgaaagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNctagagaatgaaagtgaaaacccatgtttcctagccaa
cccagggcagcaaaacagaaattaataaaaagcagtcttacaagatctaa
aactattaaaaagatccaaagattacaccaaagtccataaaaaagtttgc
atgcattatcattaccaaccatgttttcttggaaaatgaacttgcctctg
ttttcttctttttgatgttttcatgtaacagaaaactccatcttcactag
caagtggaggactatcctatttttgctttagaattgctcaacaccgtgta
gattggcccttacggttttagcgaagtgagcgcaagcaagcggacNATGG
TAAGTTTTTCTGCATCTTTTTGTCAGATTTTTgtgagaaataaaaatatt
gcaggAAATTGAATTCACATTGCTATCATTTCCTGATTTCAATCCGGATT
TTAAGCAACGAAGTTCAATTTTCTGCAGTGTTTTTTTGTGCACTAAACTG
ATCTCCAATTTTATAATCTATTTATTAGTTACATTGACTTActgtttata
gaacaatttaATAGGAGTATTGAGGCTCACGATGCCAAAAGTTTTGAGCC
ATATCTGCAAACTGCAGCTAAACAAATTTAATATGCAGATGGAGTTGGGT
GAAAATTTTACTgtagaaaacaacaaaaactctTGTTTCTTTAGTATGTA
GAACTGGTAGAACTATGgacttcttaaaaaaactctgcGGGCATCATTAT
AAAACTAGATTCCTCtacaaaatctaaattttgtttACCCGTACTGGCGT
AGTAAACAGTTGCATGCTTGCAAACACATTTTATAATACAtccaagattt
ttgaagcctttgggtcGGGCTTTGGATGTTCTCAAATCTATAAATGTTCt
caatttcaccattttttttttggtgttttgtccattttccttagaaatcg
cgcgtttttgagtccataaatctttaaaatattctcaactattttggcta
tcgaagccttgtgttcttatatagtttgttcttatagaaagatAAACGTG
TACTCGTATTATCACGCAAGAAAGAAGCCCCGATCACCTCATTACGCAAA
TTGCTTGGGAGGGTATTAATGATCTGTTTCTACATTATAAACATCAATAA
ATGATCATGAATCGGGTGAATGCAAAACgacaacaaaaaagaacaaatca
aaAACTTCTAAAATGCATAAAATTTAACAGTTTCATATTCAACTCTTTTC
Ttaagtaaaaatttttcttatttttggtgctttttaaaacttgttcttat
aaaaaattataggTAATCGGCCTTTGTGCGAAGGATTGTATATGCAGAAA
ATCTTTCATTATAGACTGGTGAACACACTTCAGTAATCTACGGAACTCCA
TATCCTTACCGTCTGTTTGTGGGATGTTTACCACTGGAGGCTACAGCTGA
AGAACTTGGTACATTCTTCTCGCAGTACGGAAACGTCGTTGAAGCCAAGG
TTGTCCTCAATGAGAATGGTGTTTCCAAACGGTTTGGGTTTGTCACTTTC
ACAAATAAAGATGACGTGACGGATTTGATTAAAAACCGcactgttgaatt
tcaaaagaaatggaTCAACGTTGGACCGGCTGTTAAGAAAAATGTAAGAA
GTTACTTTAACAGTACTCACAGTTTGTGCTTTTAGCACAATTTTCCACGA
TTTTTGAATAATTCTAGAAGATGTATTCATTCTCGCATAGAATCTTTCTG
TTTGAAAGCATTACGGCCGAAAATAAGTTAccttaaaatattaagaacta
gCGACGGCAACATTGAACTGTTTTTTATCGCGGTTGCCATATTTTGATTT
CGTCACTTCTCATTTTCAAGTCTCTTTTTTCTTCATACGAAGTGCTGCGA
GCctaaaaaagagatttttgcGACTATATTTTTTCCATCCAGCTTGAAAA
TCAGACCAGCGTTGGTGTTGGTGGTGGTGATAATCCATCGAAGCCTCGTT
CCGCGACCTCAGTAACCGTCGTCACAAAGAAATCACCACCTACTACAACA
ATGGCACAACAACAGCAACACGGAAACACAAAACAATCGTTCTATCGTGG
TCCACAACATATTCCAAAAACTGTCATTCGAAAATCGCCCACTGAACAAC
ATTTTGAACCAGATTTTATGCGTGCTCTCACCAACGCTAACGCATACCAA
CAACACAACCAACATTCAGAATTTTGTCCGCGATATCATCAAAAGATTGA
TGACTCATTCAGCTCAACATGGGGAATCTCCAACAAGAAGACTTCCTATT
GGTCTCAACCGCCCAAACGTCAAATGCAATCGAATGGCTCGTCTCGATCA
TCCAGTGTTGATGCCATGGAAACTGCATTCAAAGCACCTCTCCTTCCCTT
CGAAGAGGATGCATCGCAAAGCCAATTCATgcctaaaatcgatttttcat
ctttcgatttttcttttgataacaATCCCTGGTCCCGACTCGGTGGATGC
GGCCCCATCGCGCCACCACCTGGTTTTCCTCAGCACAGCAACTGGATTCA
AAAGAAGTAAGTGCCGAATGGTTTCTATTTTAAAATAATGGTACAACATC
AAAGACCGTCAGGCTTTCCTAAAAAAGAAATGCTTTCAGCAATTCCATTT
CACGGATTATTTTTACAGTTttcgttttattatttttttggttcaCTCAC
ACATGTCATGGGACGCTTGTGTCTGGCCTGTTCtgttttttggatatttt
taagttgcagattttatttattgattttaaaCTAATATAGTGTGTTTACC
CTTGTACATATAACCAACTCTAACcccttgttttattttttataataatt
atataCCTTAGAAGATTTTTTGTTAACGTTTGGAAAAAGTGAAgattttt
tagataatttaagGTTCAGAAGTTTTACGTTCTTTATATGGTTTTATTAT
CGTTTTATATAGTAATTAGTCCAAGTTTCAACATAAGGCAAGTTTACTac
taatattttaaaatttttaatggTTCCAGCTGGGTTTTAACTACTCGAAA
GAAAGCTCTGaaagtcaaaaaagaatttgaaattttacttcTCACCTTAC
CTTAATGAAATAATTCTCTTTAATAGACTATACTTGGCTTAACCGATTTT
AGTGTTTATGTTTTAGCAATTtagttccattttttgaaactattttattt
cttaaTGTTTGTACATTTATGCAAGACTGTTTACCGTTATTAGGACTTTT
TTACCTTaggtttaaaatatattgatgtTACTATTGAAGAATTGTGAGTT
CGTATTTTCTGCCCAAGTAATTTAGTATGCCACAACTTTATATAAAGATA
GCTGATATGATTTGAAGTGAATCGGATTAAAAATGTATAAGCATAGCTTG
ATAAccgttcaaataaaaaaacgttATTTTCC Coding sequence (CDS) from alignment at scaffold_123:305815..310246+ >TCONS_00047204 ID=TCONS_00047204|Name=TCONS_00047204|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_123:305815..310246+ (Clytia hemisphaerica)
ATGACTGGTGAACACACTTCAGTAATCTACGGAACTCCATATCCTTACCG
TCTGTTTGTGGGATGTTTACCACTGGAGGCTACAGCTGAAGAACTTGGTA
CATTCTTCTCGCAGTACGGAAACGTCGTTGAAGCCAAGGTTGTCCTCAAT
GAGAATGGTGTTTCCAAACGGTTTGGGTTTGTCACTTTCACAAATAAAGA
TGACGTGACGGATTTGATTAAAAACCGcactgttgaatttcaaaagaaat
ggaTCAACGTTGGACCGGCTGTTAAGAAAAATCTTGAAAATCAGACCAGC
GTTGGTGTTGGTGGTGGTGATAATCCATCGAAGCCTCGTTCCGCGACCTC
AGTAACCGTCGTCACAAAGAAATCACCACCTACTACAACAATGGCACAAC
AACAGCAACACGGAAACACAAAACAATCGTTCTATCGTGGTCCACAACAT
ATTCCAAAAACTGTCATTCGAAAATCGCCCACTGAACAACATTTTGAACC
AGATTTTATGCGTGCTCTCACCAACGCTAACGCATACCAACAACACAACC
AACATTCAGAATTTTGTCCGCGATATCATCAAAAGATTGATGACTCATTC
AGCTCAACATGGGGAATCTCCAACAAGAAGACTTCCTATTGGTCTCAACC
GCCCAAACGTCAAATGCAATCGAATGGCTCGTCTCGATCATCCAGTGTTG
ATGCCATGGAAACTGCATTCAAAGCACCTCTCCTTCCCTTCGAAGAGGAT
GCATCGCAAAGCCAATTCATgcctaaaatcgatttttcatctttcgattt
ttcttttgataacaATCCCTGGTCCCGACTCGGTGGATGCGGCCCCATCG
CGCCACCACCTGGTTTTCCTCAGCACAGCAACTGGATTCAAAAGAAGTAA
ATGACTGGTGAACACACTTCAGTAATCTACGGAACTCCATATCCTTACCG
TCTGTTTGTGGGATGTTTACCACTGGAGGCTACAGCTGAAGAACTTGGTA
CATTCTTCTCGCAGTACGGAAACGTCGTTGAAGCCAAGGTTGTCCTCAAT
GAGAATGGTGTTTCCAAACGGTTTGGGTTTGTCACTTTCACAAATAAAGA
TGACGTGACGGATTTGATTAAAAACCGcactgttgaatttcaaaagaaat
ggaTCAACGTTGGACCGGCTGTTAAGAAAAATCTTGAAAATCAGACCAGC
GTTGGTGTTGGTGGTGGTGATAATCCATCGAAGCCTCGTTCCGCGACCTC
AGTAACCGTCGTCACAAAGAAATCACCACCTACTACAACAATGGCACAAC
AACAGCAACACGGAAACACAAAACAATCGTTCTATCGTGGTCCACAACAT
ATTCCAAAAACTGTCATTCGAAAATCGCCCACTGAACAACATTTTGAACC
AGATTTTATGCGTGCTCTCACCAACGCTAACGCATACCAACAACACAACC
AACATTCAGAATTTTGTCCGCGATATCATCAAAAGATTGATGACTCATTC
AGCTCAACATGGGGAATCTCCAACAAGAAGACTTCCTATTGGTCTCAACC
GCCCAAACGTCAAATGCAATCGAATGGCTCGTCTCGATCATCCAGTGTTG
ATGCCATGGAAACTGCATTCAAAGCACCTCTCCTTCCCTTCGAAGAGGAT
GCATCGCAAAGCCAATTCATgcctaaaatcgatttttcatctttcgattt
ttcttttgataacaATCCCTGGTCCCGACTCGGTGGATGCGGCCCCATCG
CGCCACCACCTGGTTTTCCTCAGCACAGCAACTGGATTCAAAAGAAGTAA
ATGACTGGTGAACACACTTCAGTAATCTACGGAACTCCATATCCTTACCG
TCTGTTTGTGGGATGTTTACCACTGGAGGCTACAGCTGAAGAACTTGGTA
CATTCTTCTCGCAGTACGGAAACGTCGTTGAAGCCAAGGTTGTCCTCAAT
GAGAATGGTGTTTCCAAACGGTTTGGGTTTGTCACTTTCACAAATAAAGA
TGACGTGACGGATTTGATTAAAAACCGcactgttgaatttcaaaagaaat
ggaTCAACGTTGGACCGGCTGTTAAGAAAAATCTTGAAAATCAGACCAGC
GTTGGTGTTGGTGGTGGTGATAATCCATCGAAGCCTCGTTCCGCGACCTC
AGTAACCGTCGTCACAAAGAAATCACCACCTACTACAACAATGGCACAAC
AACAGCAACACGGAAACACAAAACAATCGTTCTATCGTGGTCCACAACAT
ATTCCAAAAACTGTCATTCGAAAATCGCCCACTGAACAACATTTTGAACC
AGATTTTATGCGTGCTCTCACCAACGCTAACGCATACCAACAACACAACC
AACATTCAGAATTTTGTCCGCGATATCATCAAAAGATTGATGACTCATTC
AGCTCAACATGGGGAATCTCCAACAAGAAGACTTCCTATTGGTCTCAACC
GCCCAAACGTCAAATGCAATCGAATGGCTCGTCTCGATCATCCAGTGTTG
ATGCCATGGAAACTGCATTCAAAGCACCTCTCCTTCCCTTCGAAGAGGAT
GCATCGCAAAGCCAATTCATgcctaaaatcgatttttcatctttcgattt
ttcttttgataacaATCCCTGGTCCCGACTCGGTGGATGCGGCCCCATCG
CGCCACCACCTGGTTTTCCTCAGCACAGCAACTGGATTCAAAAGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047204-exon-scaffold_123-1491911889:305815..306220 | TCONS_00047204-exon-scaffold_123-1491911889:305815..306220 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1510915933:305815..306220 | TCONS_00047204-exon-scaffold_123-1510915933:305815..306220 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1575043694:305815..306220 | TCONS_00047204-exon-scaffold_123-1575043694:305815..306220 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1491911889:306334..306377 | TCONS_00047204-exon-scaffold_123-1491911889:306334..306377 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1510915933:306334..306377 | TCONS_00047204-exon-scaffold_123-1510915933:306334..306377 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1575043694:306334..306377 | TCONS_00047204-exon-scaffold_123-1575043694:306334..306377 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1491911889:308179..308457 | TCONS_00047204-exon-scaffold_123-1491911889:308179..308457 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1510915933:308179..308457 | TCONS_00047204-exon-scaffold_123-1510915933:308179..308457 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1575043694:308179..308457 | TCONS_00047204-exon-scaffold_123-1575043694:308179..308457 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1491911889:308757..310246 | TCONS_00047204-exon-scaffold_123-1491911889:308757..310246 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1510915933:308757..310246 | TCONS_00047204-exon-scaffold_123-1510915933:308757..310246 | Clytia hemisphaerica | exon |
| TCONS_00047204-exon-scaffold_123-1575043694:308757..310246 | TCONS_00047204-exon-scaffold_123-1575043694:308757..310246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:305815..310246 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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