TCONS_00047443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047443
Unique NameTCONS_00047443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047443 ID=TCONS_00047443|Name=TCONS_00047443|organism=Clytia hemisphaerica|type=transcript|length=1398bp
CTTTCAGCAATTACACGGATATAATAATTACGAAGAACTTCTACAATTAC
AACAACGAGCTGTCCATATGCCTCAATCACCATACCATTATGATGTTTCA
ACGATGTATCCAACGCCTACAGCTACTGCTACAAGAGAAGGGATCGCTGG
TTATCAAGGCGCAGAAACTAAATTTGCAAGAGCAAGTGGAGATGAGACGA
CTGGTCTACATCAAGCTAACGCACACGTAGCAGCAGGCAACATAAACGCC
CAACATGCCCAAGCCTATATGAACGCAGCCGGTCAATTACCGTATGGTTT
CACGTATGCTTACCAACCCGGTGTGATGCCAGGCCAAGCACCAGGCTTGT
ACCCAGCTTTCACTACACCAAATGTATATTTGAACCAAGCTGGAGGAGGT
AGCAAAGGCGTGGTTGGTACGCAATACCAGTCGCAATATACTCCACAGAC
CTTCAACAGTGCTAAATATTCAGGTTCTGGAAACCATGATTTCAAAGGGA
ATTATCACAACAGCTCATCACAGACTACCTTAACAAAGAGTGGAAACCCA
TCTGtaaATAGTGGGAACGATAGTGGTCAGAACAATGCCTCCTTCAAAGG
GCAAGGGTATAATGATGGTAAAGCCTTCCTTGGCACGAGTCCATCATCGC
AGCCTGGGATGACTTTGCACGGTCAAAACACTCATCTCAACCCGTACTTG
TTGGCCCAGCAACAACAGCAGAACAGCCTACTGGCTGGCCAagtttcagc
caatcagattggTCATCAGGGTAGCCATGACAACCGATCTGGATTCAGTG
GTAGTCAACAGAAACGGGAAGGGAAAGGATCATATCAATCTTACTGGTCT
GGTTCAAGATGAGATGACGTCATCGCTGTCATCTTTGACCTGGTTTCTCG
GCATGGAGCATTTGGTCTGGTTTCCACCTGCTTTTATATTATGGATGGGT
ACCTTTTCAACAAATTCATTCTCTGGACTTGAATTTTTCTATTAAtttaa
agaaaacgaaaaaatttTTGGGACAGAGTGGATTTTTTTTaaccagaaaa
aaaacataagttgttgttgttatttaCGTGAGAAAGATAGAAAGAGTATT
GTttattatgaattttttttgattttttttgtatacATTTTTTGGAACAC
ATTTTCAAAGTGTCTAATATCTTCGCCCCCGGTTCtgtctttatttttct
tgttttgtttaTACTGAAGAGGAGAACTATCATTCTcgtgtttttgttct
ttttttagtttttttttgtcattttttcacTAGTAGTGATTGACAAAAGA
ATATACAGAGATATGACTATATGTATATAGGATTAACCGCACCAAACCCG
CCCACAGGttcgaaaagaaagaaaacacaaaagaaCAACTTCAAAATT
Run BLAST on NCBI

protein sequence of TCONS_00047443-protein

>TCONS_00047443-protein ID=TCONS_00047443-protein|Name=TCONS_00047443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
FQQLHGYNNYEELLQLQQRAVHMPQSPYHYDVSTMYPTPTATATREGIAG
YQGAETKFARASGDETTGLHQANAHVAAGNINAQHAQAYMNAAGQLPYGF
TYAYQPGVMPGQAPGLYPAFTTPNVYLNQAGGGSKGVVGTQYQSQYTPQT
FNSAKYSGSGNHDFKGNYHNSSSQTTLTKSGNPSVNSGNDSGQNNASFKG
QGYNDGKAFLGTSPSSQPGMTLHGQNTHLNPYLLAQQQQQNSLLAGQVSA
NQIGHQGSHDNRSGFSGSQQKREGKGSYQSYWSGSR
Run BLAST on NCBI

transcript from alignment at scaffold_128:94721..104711+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047443 ID=TCONS_00047443|Name=TCONS_00047443|organism=Clytia hemisphaerica|type=transcript|length=9991bp|location=Sequence derived from alignment at scaffold_128:94721..104711+ (Clytia hemisphaerica)
CTTTCAGCAATTACACGGATATAATAATTACGAAGAACTTCTACAATTAC
AACAACGAGCTGTCCATATGGTGAGTCTACTATATAATTCTTGTTGATCA
ATTTtacttttcaaccctttttttCCCCATTCCGTCAATATTTCAAGCAT
GTCTCTGCATTGGAGTCTCCAATAAATCTGATAAATATCGATCACCTTCC
CTAGAATTTCTCTTTGTTGAATAGAGAAATAGCCAAGCTCTGGATTAAAT
TTCTCTGGTCCCTTGCGAAGCTGCCGCATAGAGGCTCGTTATTTATTAGA
TATTTATTAATCAAAGGAGGTGAACTCATAGTCAACAAGTGCTCGATAAA
CCGACCAGGAGTAGAGCTtcttcaatcaaaaaatatttatagatATTTat
tagatatttaaaaaaagaattatttttgagGTTTAACTCAACTTGGAATA
TTCTCAAATGTTGCAATTTGGTATGCTTGGAGCTTTCTTTGGGTTTACTT
TTAGTTGATAAGATAATTAGATAATTATTCAAGGTCTAGTTCGATATTTT
ACCCAAAAATAAATACAGTACCCAAAtattaaatcatgttttcaaaatca
TCATATGACTCATATGACATCATTTTTCTCTGCATGAGCACCGGGGTTTT
TCCCTGCTTACGTATATCTTCAATTgaactttttgcaaaaatgctgaaaa
attgcTGATGCAAGTTTATCTCTGGTATGAATAGAATGGTCAGATCACTT
TCATGTGTCGGTTCAATAACATTGAATTATTGATGACGAAGTTTCGATTT
TAAATCAATTCCATTCATATCATATCTctcttattttgataattttccat
cttcagttttttataagaatacttttTGATAGATTCCACTTTGCTAAGAT
TTCAATTATAAATCTTGTCAATTAGTCAGGTTCTTTCTCTTCGACATAAC
TGGGAAACTGAAGGTGTATGTGTCACCACAGAAATAACTGACTTGTGGCA
GCCGAGCGTTTATAGCGACCTTGCTTTTCGATCATTCGATGTTAGATATC
TAAGTGTGTCAGTGTTTCttaaatgttttaaacgaaaaacTTGActttgt
tttcttataaaaagacattTTACCTCCCTTGTTTTTTATCTGGAATATTT
TTTCAGCATTCAATGTGGAACCATTTTCGAATGTTGTTTTCAAAACCTAC
CATAACATTTCCGACCGTTTAGTTTACAGTAAAACTCTGTAAATTTGtta
ttaaattttaattttttgatcaCTCGACGCGCCGATTGTAAAAATAACAT
CAGCAAAACAGAATACAATTTTCAGTGaattttcaagcattttttctttt
tgaagaacAACTTCTAATCTGTGATAAAGTCAAATTAATGAGCTACAGAA
ACGGACTTTCTAAGAGTGTCAAGGTCAAAATGACCTTATCTCCTTCAATT
CTCCATAGAAAATTTCCCCCAGCTTTGCAAAAATCCCAAGGTGTCAtatg
ataagaaaataaaataaaaagaggtAGAAGCAAAAAGCTCATTTAATCAA
CGTTTTATTGAACTTCTTTCTGAAGCGTGGTATTTTGATAATGATAGGCT
TTAATGATACAAAAACTAATTTACATCAACTTTAAACTACctctaaacaa
aaaatatttttttaaagcaaaaatttcgaatATCGAAAATTGTAAATTGC
ATAATTTTTAACTCTCAAGAAATGATAAATTAACCATCATAAAACTGACA
TAACATAGTGAAGAATTATTTAAAATAACAGTCAAAGCTAGGAGTTAATA
GTCTGATTTTTCATGTTTCCCTATTCAACAGTGGtcaatttttggaatat
ttttcccaGAAGCGATCACCAATCTTTGCCAACAGACTTCCAAAGAACTT
GCATCTCAAAGAGTCTTCTAATTCCTTCCTCAATTCCTCTTCGCTCTTCG
ATTGGTTCTTATTGTCCCCTTTACCGCCACCACTACTACTTCCGCCATTA
TGGGTGTGGTCGCCTTGAGCATGTTTTTGTGAGAGCTTTGTTATGATGGA
GTTGATTATCTGCTCTTCTTCCTCTGTATTATCCATCTTTAATGATTCCA
AGAAACGACGGATTGTTGCTATGGAGAACATTTCACcttctttgatgttt
tgaaaTTGGTTTGTTGCTTTCTCGCTCAAAATCTTCTCAATTCCAATGGC
AATTTGATGTAGAGCTGATCTACGTTTTGTgttattttctaagtcttttt
caACAAGCCAACAAACAAGTCCTTGGTACTCAAAATCTGACTTTATCGAA
TCCACTCCTAGGGCCTTCTCTCTCCTACTATGTCTTTGCCAGAAATCTCG
ATCCGCAATCTTTTAGTCTCAAATTCCAGTTTTGAGTTTTCCCAATCAAG
TGCTacaattttgatattcttatttCATCTGCTATATAATAACTTCCGTC
CGATTTCTGTTCATAAGAATACCTTGAATCTTGATGCATACCCTTGCCGT
AAATGGCAAGTTCTCTACAAAATTTCTGATATTAAACTCAAGAATGTGTA
CTGTTCTTTTCGCTTGCTTTTTAAGAtatgattctatcaaaattgctttg
ctttgtttttatttcgttcttttacccccttttttgtaaactttttccCG
GGTGTATTTCTCTATTCACATTCAATAAATTCGTAATGCTGAATAGAGTA
TTCATATACGAAAGTTCCTATCAAAATAGGTTTCAatacaaaaaaagtta
gttgcTATTTTGTCTCTGGGAAAActtcaatttttcaacaaatattttta
tgactCACCCCAGTTCCCGAATTTCCCGATAAACAATCGGATTCTTTTGA
CACTTcgcatttcattttcaattacaTAACGGTTCCTGTTTTGActcttt
aaatttttgtttttcattttcttcaaaatttataCCTAGGTCAATGTTTA
TTTCCACGTGGCCACATGACGTATGAACCTaacccgggttttttttttcg
tgcTAAATTAagtaaattaatgaaaaatcaggaaacatatgaaaaaaact
ttgaaaaaattattgcctACGTAATTAATGCTTTTATGAAAGTAATATGG
TTaagaaacaagaaaattgaaattttcattacaGCCTCAATCACCATACC
ATTATGATGTTTCAACGATGTATCCAACGCCTACAGCTACTGCTACAAGA
GAAGGGATCGCTGGTTATCAAGGTATTCAACgtaaaataaatatataaag
caaaaattaaaaaaatgtggTGTTTCCGGAAaacggccgggtgaaaaaaa
gattttttctgacccggccgcagacttgATACATTAGGGCTTACTTATat
tattcagggcttacttcatactgtttgtacataaaagtcatcaaaagtta
tcaaaaaatagcaaaaaaaaagatttttttccggccggccgcatgagagc
ttttttccttcacccgcattccggaaacactacattttttggacctaccc
cggtggggtggaggtcctataaattaacccatgttcgttcgttcgttagt
tagtgtgttagttaccagcttttctcgagattggctNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtattttgaccagttatgtcttatgtgtttcattgtttc
aatgttcactgattagtttgataaccaggtaggtccataaaagtatcgct
tgtttatTTTCGCCTAAGCAAAATTTCCCGATTTCGAAAAGTCTACTCAT
CTTGAAatatataccttattacacgaatattactagtcattttattaaca
cgaattgaaaaatttcttgttaataaaaaccccccttaattaaaaccagc
cgtggtgtccttgaaaaagcacaTTAGAatcgtgttaattttttgcgtgt
taatttcaaggccgttgaatccTTGCCtatagtaatattcgtgtaataag
gtagttaTGATTTTGATCATTTCATTTCGTCATAATGCTCTCAATATAAT
GTATGTGGGCGACTCATCTTACCTAACAATGCTTAAGTCCCTTAGACGAG
TTTCCCTTACACTTTTTAGGGACTTAGTGGCCTGAATTTCAGTCTTCATA
TGTGCTGTCgtttatacagtggagtctccataactcgaacagggaacaca
aatttgctTGAGTTAAGGGAatctcgagttatggagtaaggtatATAAGG
CATTGCTAACTGAATGGagcataaaacttgttcgagtcaAGGAGACGTTC
ACTGTACTTTATAAATGTGAagcaaataaaactttttgcgTCCTTTCAGG
CGCAGAAACTAAATTTGCAAGAGCAAGTGGAGATGAGACGACTGGTCTAC
ATCAAGGTAAGGGGAAATTTGATAGTCCTCATGTTATAATTAGATTGAAT
AGCAAACACAAGTTTGTATTTCTtcaaatgggctcttccagaaaaaaatt
cgttcatgggcgtggaggatatattattttttcaatgatctacccctgga
tatttcgatttttcacccccttGACACGcgttttacccctggacaagcat
caaatcGACTCCCTGGACGCTAAAATTTACCCCGTGACATTACAAATTCA
CCCCGTGGACATGCCAgttttcaggattttttcgATACCCTTGGACAAta
tatcttccaccccctaTGAAAGgctttttctggaagagcccaatagaAGA
ATTTAATTCGAGGCTTTTCAATGAAATCGTCTTTTCCTTCCTGTGTTCAC
GACTCCGAATATATTCATCAATTGATTTTCAATCTAAAATATGAAACGAT
CTTTCAACGAGAAAGGCTTATAAGCTCTAGTGTAATTAGTCGACTTTCTG
CCTATCGTAAGCGAAAAAATGGCAGAAAGTTGCCAGTTGAAATCTATACT
TTGAAAAGATTAAAAGAAGTCATTGCGTAAAGGTCAAAAAAGGCCGAGGC
ATTGGCTTTAGACAGTCAACTCTCTACCCTCATTAAtgcacaattagaat
aggcagggagAAAATTGATATGTCTAAACTAGAGTTATTATTTCGTTGAG
ATTGTCAAAATCCTCTAACATTTTTCATCCAATATCTTTTAGCTAACGCA
CACGTAGCAGCAGGCAACATAAACGCNggttgaaatttagcaaaatcaaa
aacatgaacgaaaaaaccgacaaaaagcaagaaaaacaatcatttgaaga
agctaaacaaaaccaaacatgcactcctacctcctgctcagatgacgatg
accaaaaccgtctaaaatgccgaaaatgccaccgcatggtacactacgag
tgcacacaattaccGCTTTATCAGCTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGTGTTCACGACCCCGAATATATTCATCAATTGATTTT
CAATCTAAAATATGAAACGATCTTTCAACGAGAAAGGCTTATAAGCTCTA
GTGTAATTAGTCGACTTTCTGCCTATCGTAAGCGAAAAAATGGCAGAAAG
TTGCCAGTTGAAATCTATACTTTGAAAAGATTAAAAGAAGTCATTGCGTA
AAGGTCAAAAAAGGCCGAGGCATTGGCTTTAGACAGTCAACTCTCTACCC
TCATTAAtgcacaattagaataggcagggagAAAATTGATATGTCTAAAC
TAGAGTTATTATTTCGTTGAGATTGTCAAAATCCTCTAACATTTTTCATC
CAATATCTTTTAGCTAACGCACACGTAGCAGCAGGCAACATAAACGCCCA
ACATGCCCAAGCCTATATGAACGCAGCCGGTCAATTACCGTATGGTTTCA
CGTATGCTTACCAACCCGGTGTGATGCCAGGCCAAGCACCAGGCTTGTAC
CCAGCTTTCACTACACCAAATGTATATGTAAGTTCAAACCTTTACACAAA
ACTTATCTCGCACTTTCACGCTCTTTTTCAGTTTGGGGGTACAgttcaca
gatttctgtaaagcccgaagggctagatgtcgtgatGGGTAAAGGTGGTC
TAAATAGATTACGACGCCCCTCAAAACAACATCACAAATGATGatgggct
agatgtcgtgcttttaagctctttcaagcaaaaaaaaaaagaatatcgcc
aaaatattgctgctattgttttcgaaaacctgcggagcttcttattggtc
aagagctgaaattctattgtaatgtcacgtgacctaggcaggatttccta
cctagccTCGGCAcagttttcagccaaagcacgacatctagtccttcggg
ttttataaatctatggtacAGTTAGCCATAATATCACTCTTTTTTTTCTC
CAGTTGAACCAAGCTGGAGGAGGTAGCAAAGGCGTGGTTGGTACGCAATA
CCAGTCGCAATATACTCCACAGACCTTCAACAGTGCTAAATATTCAGGTT
CTGGAAACCATGATTTCAAAGGGAATTATCACAACAGCTCATCACAGACT
ACCTTAACAAAGAGTGGAAACCCATCTGGTAAGCAACACTATTTTGTTAA
CAAATTTCATGTAGTACTTGTAGAAACTtttgttttataattttttagaa
atatttcNTCATGTAGTACTTGTAGAAACTtttgttttataattttttag
aaatatttctaaacCTGGTATTTTTTCTTGATATAGGAAAATGAAATAGA
GGGAGGTTAGACCTTTTAATCAATTActttacgaacatcacttgccctAT
TCAAACAATTGCCAtagtgattatgtcccttgagacattaaatgattttt
tatgaacagAAAGTTTcatagttttaataaaatccgctgggagttaatca
ccatggcaataaattcaaaacgaggcaagtgatgttcgtaacgtaattta
tgaaaagatctattCTGAAATTTTCTGGTGTTTTCGGTAGGATATAAGAC
GTAAGCTTGATTTGTTTCAAGAATTAAAGATCATAAGGCATAATAgtgga
aaaaatttttcttgatgtttttttctttttttcagtaaATAGTGGGAACG
ATAGTGGTCAGAACAATGCCTCCTTCAAAGGGCAAGGGGTGAGTTTTTAA
AACGTGTTGAATTTGTATGACCAAGTGTCTTTATTCCCTCGCTCAATGCA
CTACACTAGGTTGGCACGGAAAGTGTTTTTATCATAATGATTACAATATT
TTTCCCTTGGACATTTCGATCCCCCCGCAAATTCACCCAATAGGCAATAG
AGATGGgagtttttcagtattttttcgATACCACTTGGGCACTATATCTT
CCACCAACTGTAACCCaggttttttctggaaaatccaAATGAAATGATTT
TGAGATCTCCTAAGGCATGGATTACAATTttgttacaaaaaataaaacat
ccAATGTTTAACTCTAAAACTCTGGTCAAGGTCCGTCCATCTGATTTATC
ATCTGTTTTAAGAGAATACGAACATTTCACTTCTTCTTCTACCTTTGTAG
TATAATGATGGTAAAGCCTTCCTTGGCACGAGTCCATCATCGCAGCCTGG
GATGACTTTGCACGGTCAAAACACTCATCTCAACCCGTACTTGTTGGCCC
AGCAACAACAGCAGAACAGCCTACTGGCTGGCCAagtttcagccaatcag
attggTCATCAGGGTAGCCATGACAACCGATCTGGATTCAGTGGTAGTCA
ACAGAAACGGGAAGGGAAAGGATCATATCAATCTTACTGGTCTGGTTCAA
GATGAGATGACGTCATCGCTGTCATCTTTGACCTGGTTTCTCGGCATGGA
GCATTTGGTCTGGTTTCCACCTGCTTTTATATTATGGATGGGTACCTTTT
CAACAAATTCATTCTCTGGACTTGAATTTTTCTATTAAtttaaagaaaac
gaaaaaatttTTGGGACAGAGTGGATTTTTTTTaaccagaaaaaaaacat
aagttgttgttgttatttaCGTGAGAAAGATAGAAAGAGTATTGTttatt
atgaattttttttgattttttttgtatacATTTTTTGGAACACATTTTCA
AAGTGTCTAATATCTTCGCCCCCGGTTCtgtctttatttttcttgttttg
tttaTACTGAAGAGGAGAACTATCATTCTcgtgtttttgttcttttttta
gtttttttttgtcattttttcacTAGTAGTGATTGACAAAAGAATATACA
GAGATATGACTATATGTATATAGGATTAACCGCACCAAACCCGCCCACAG
GttcgaaaagaaagaaaacacaaaagaaCAACTTCAAAATT

Coding sequence (CDS) from alignment at scaffold_128:94721..104711+

>TCONS_00047443 ID=TCONS_00047443|Name=TCONS_00047443|organism=Clytia hemisphaerica|type=CDS|length=6888bp|location=Sequence derived from alignment at scaffold_128:94721..104711+ (Clytia hemisphaerica)
TTTCAGCAATTACACGGATATAATAATTACGAAGAACTTCTACAATTACA
ACAACGAGCTGTCCATATGCCTCAATCACCATACCATTATGATGTTTCAA
CGATGTATCCAACGCCTACAGCTACTGCTACAAGAGAAGGGATCGCTGGT
TATCAAGGCGCAGAAACTAAATTTGCAAGAGCAAGTGGAGATGAGACGAC
TGGTCTACATCAAGCTAACGCACACGTAGCAGCAGGCAACATAAACGCCC
AACATGCCCAAGCCTATATGAACGCAGCCGGTCAATTACCGTATGGTTTC
ACGTATGCTTACCAACCCGGTGTGATGCCAGGCCAAGCACCAGGCTTGTA
CCCAGCTTTCACTACACCAAATGTATATTTGAACCAAGCTGGAGGAGGTA
GCAAAGGCGTGGTTGGTACGCAATACCAGTCGCAATATACTCCACAGACC
TTCAACAGTGCTAAATATTCAGGTTCTGGAAACCATGATTTCAAAGGGAA
TTATCACAACAGCTCATCACAGACTACCTTAACAAAGAGTGGAAACCCAT
CTGtaaATAGTGGGAACGATAGTGGTCAGAACAATGCCTCCTTCAAAGGG
CAAGGGTATAATGATGGTAAAGCCTTCCTTGGCACGAGTCCATCATCGCA
GCCTGGGATGACTTTGCACGGTCAAAACACTCATCTCAACCCGTACTTGT
TGGCCCAGCAACAACAGCAGAACAGCCTACTGGCTGGCCAagtttcagcc
aatcagattggTCATCAGGGTAGCCATGACAACCGATCTGGATTCAGTGG
TAGTCAACAGAAACGGGAAGGGAAAGGATCATATCAATCTTACTGGTCTG
GTTCAAGATGATTTCAGCAATTACACGGATATAATAATTACGAAGAACTT
CTACAATTACAACAACGAGCTGTCCATATGCCTCAATCACCATACCATTA
TGATGTTTCAACGATGTATCCAACGCCTACAGCTACTGCTACAAGAGAAG
GGATCGCTGGTTATCAAGGCGCAGAAACTAAATTTGCAAGAGCAAGTGGA
GATGAGACGACTGGTCTACATCAAGCTAACGCACACGTAGCAGCAGGCAA
CATAAACGCCCAACATGCCCAAGCCTATATGAACGCAGCCGGTCAATTAC
CGTATGGTTTCACGTATGCTTACCAACCCGGTGTGATGCCAGGCCAAGCA
CCAGGCTTGTACCCAGCTTTCACTACACCAAATGTATATTTGAACCAAGC
TGGAGGAGGTAGCAAAGGCGTGGTTGGTACGCAATACCAGTCGCAATATA
CTCCACAGACCTTCAACAGTGCTAAATATTCAGGTTCTGGAAACCATGAT
TTCAAAGGGAATTATCACAACAGCTCATCACAGACTACCTTAACAAAGAG
TGGAAACCCATCTGtaaATAGTGGGAACGATAGTGGTCAGAACAATGCCT
CCTTCAAAGGGCAAGGGTATAATGATGGTAAAGCCTTCCTTGGCACGAGT
CCATCATCGCAGCCTGGGATGACTTTGCACGGTCAAAACACTCATCTCAA
CCCGTACTTGTTGGCCCAGCAACAACAGCAGAACAGCCTACTGGCTGGCC
AagtttcagccaatcagattggTCATCAGGGTAGCCATGACAACCGATCT
GGATTCAGTGGTAGTCAACAGAAACGGGAAGGGAAAGGATCATATCAATC
TTACTGGTCTGGTTCAAGATGATTTCAGCAATTACACGGATATAATAATT
ACGAAGAACTTCTACAATTACAACAACGAGCTGTCCATATGCCTCAATCA
CCATACCATTATGATGTTTCAACGATGTATCCAACGCCTACAGCTACTGC
TACAAGAGAAGGGATCGCTGGTTATCAAGGCGCAGAAACTAAATTTGCAA
GAGCAAGTGGAGATGAGACGACTGGTCTACATCAAGCTAACGCACACGTA
GCAGCAGGCAACATAAACGCCCAACATGCCCAAGCCTATATGAACGCAGC
CGGTCAATTACCGTATGGTTTCACGTATGCTTACCAACCCGGTGTGATGC
CAGGCCAAGCACCAGGCTTGTACCCAGCTTTCACTACACCAAATGTATAT
TTGAACCAAGCTGGAGGAGGTAGCAAAGGCGTGGTTGGTACGCAATACCA
GTCGCAATATACTCCACAGACCTTCAACAGTGCTAAATATTCAGGTTCTG
GAAACCATGATTTCAAAGGGAATTATCACAACAGCTCATCACAGACTACC
TTAACAAAGAGTGGAAACCCATCTGtaaATAGTGGGAACGATAGTGGTCA
GAACAATGCCTCCTTCAAAGGGCAAGGGTATAATGATGGTAAAGCCTTCC
TTGGCACGAGTCCATCATCGCAGCCTGGGATGACTTTGCACGGTCAAAAC
ACTCATCTCAACCCGTACTTGTTGGCCCAGCAACAACAGCAGAACAGCCT
ACTGGCTGGCCAagtttcagccaatcagattggTCATCAGGGTAGCCATG
ACAACCGATCTGGATTCAGTGGTAGTCAACAGAAACGGGAAGGGAAAGGA
TCATATCAATCTTACTGGTCTGGTTCAAGATGATTTCAGCAATTACACGG
ATATAATAATTACGAAGAACTTCTACAATTACAACAACGAGCTGTCCATA
TGCCTCAATCACCATACCATTATGATGTTTCAACGATGTATCCAACGCCT
ACAGCTACTGCTACAAGAGAAGGGATCGCTGGTTATCAAGGCGCAGAAAC
TAAATTTGCAAGAGCAAGTGGAGATGAGACGACTGGTCTACATCAAGCTA
ACGCACACGTAGCAGCAGGCAACATAAACGCCCAACATGCCCAAGCCTAT
ATGAACGCAGCCGGTCAATTACCGTATGGTTTCACGTATGCTTACCAACC
CGGTGTGATGCCAGGCCAAGCACCAGGCTTGTACCCAGCTTTCACTACAC
CAAATGTATATTTGAACCAAGCTGGAGGAGGTAGCAAAGGCGTGGTTGGT
ACGCAATACCAGTCGCAATATACTCCACAGACCTTCAACAGTGCTAAATA
TTCAGGTTCTGGAAACCATGATTTCAAAGGGAATTATCACAACAGCTCAT
CACAGACTACCTTAACAAAGAGTGGAAACCCATCTGtaaATAGTGGGAAC
GATAGTGGTCAGAACAATGCCTCCTTCAAAGGGCAAGGGTATAATGATGG
TAAAGCCTTCCTTGGCACGAGTCCATCATCGCAGCCTGGGATGACTTTGC
ACGGTCAAAACACTCATCTCAACCCGTACTTGTTGGCCCAGCAACAACAG
CAGAACAGCCTACTGGCTGGCCAagtttcagccaatcagattggTCATCA
GGGTAGCCATGACAACCGATCTGGATTCAGTGGTAGTCAACAGAAACGGG
AAGGGAAAGGATCATATCAATCTTACTGGTCTGGTTCAAGATGATTTCAG
CAATTACACGGATATAATAATTACGAAGAACTTCTACAATTACAACAACG
AGCTGTCCATATGCCTCAATCACCATACCATTATGATGTTTCAACGATGT
ATCCAACGCCTACAGCTACTGCTACAAGAGAAGGGATCGCTGGTTATCAA
GGCGCAGAAACTAAATTTGCAAGAGCAAGTGGAGATGAGACGACTGGTCT
ACATCAAGCTAACGCACACGTAGCAGCAGGCAACATAAACGCCCAACATG
CCCAAGCCTATATGAACGCAGCCGGTCAATTACCGTATGGTTTCACGTAT
GCTTACCAACCCGGTGTGATGCCAGGCCAAGCACCAGGCTTGTACCCAGC
TTTCACTACACCAAATGTATATTTGAACCAAGCTGGAGGAGGTAGCAAAG
GCGTGGTTGGTACGCAATACCAGTCGCAATATACTCCACAGACCTTCAAC
AGTGCTAAATATTCAGGTTCTGGAAACCATGATTTCAAAGGGAATTATCA
CAACAGCTCATCACAGACTACCTTAACAAAGAGTGGAAACCCATCTGtaa
ATAGTGGGAACGATAGTGGTCAGAACAATGCCTCCTTCAAAGGGCAAGGG
TATAATGATGGTAAAGCCTTCCTTGGCACGAGTCCATCATCGCAGCCTGG
GATGACTTTGCACGGTCAAAACACTCATCTCAACCCGTACTTGTTGGCCC
AGCAACAACAGCAGAACAGCCTACTGGCTGGCCAagtttcagccaatcag
attggTCATCAGGGTAGCCATGACAACCGATCTGGATTCAGTGGTAGTCA
ACAGAAACGGGAAGGGAAAGGATCATATCAATCTTACTGGTCTGGTTCAA
GATGATTTCAGCAATTACACGGATATAATAATTACGAAGAACTTCTACAA
TTACAACAACGAGCTGTCCATATGCCTCAATCACCATACCATTATGATGT
TTCAACGATGTATCCAACGCCTACAGCTACTGCTACAAGAGAAGGGATCG
CTGGTTATCAAGGCGCAGAAACTAAATTTGCAAGAGCAAGTGGAGATGAG
ACGACTGGTCTACATCAAGCTAACGCACACGTAGCAGCAGGCAACATAAA
CGCCCAACATGCCCAAGCCTATATGAACGCAGCCGGTCAATTACCGTATG
GTTTCACGTATGCTTACCAACCCGGTGTGATGCCAGGCCAAGCACCAGGC
TTGTACCCAGCTTTCACTACACCAAATGTATATTTGAACCAAGCTGGAGG
AGGTAGCAAAGGCGTGGTTGGTACGCAATACCAGTCGCAATATACTCCAC
AGACCTTCAACAGTGCTAAATATTCAGGTTCTGGAAACCATGATTTCAAA
GGGAATTATCACAACAGCTCATCACAGACTACCTTAACAAAGAGTGGAAA
CCCATCTGtaaATAGTGGGAACGATAGTGGTCAGAACAATGCCTCCTTCA
AAGGGCAAGGGTATAATGATGGTAAAGCCTTCCTTGGCACGAGTCCATCA
TCGCAGCCTGGGATGACTTTGCACGGTCAAAACACTCATCTCAACCCGTA
CTTGTTGGCCCAGCAACAACAGCAGAACAGCCTACTGGCTGGCCAagttt
cagccaatcagattggTCATCAGGGTAGCCATGACAACCGATCTGGATTC
AGTGGTAGTCAACAGAAACGGGAAGGGAAAGGATCATATCAATCTTACTG
GTCTGGTTCAAGATGATTTCAGCAATTACACGGATATAATAATTACGAAG
AACTTCTACAATTACAACAACGAGCTGTCCATATGCCTCAATCACCATAC
CATTATGATGTTTCAACGATGTATCCAACGCCTACAGCTACTGCTACAAG
AGAAGGGATCGCTGGTTATCAAGGCGCAGAAACTAAATTTGCAAGAGCAA
GTGGAGATGAGACGACTGGTCTACATCAAGCTAACGCACACGTAGCAGCA
GGCAACATAAACGCCCAACATGCCCAAGCCTATATGAACGCAGCCGGTCA
ATTACCGTATGGTTTCACGTATGCTTACCAACCCGGTGTGATGCCAGGCC
AAGCACCAGGCTTGTACCCAGCTTTCACTACACCAAATGTATATTTGAAC
CAAGCTGGAGGAGGTAGCAAAGGCGTGGTTGGTACGCAATACCAGTCGCA
ATATACTCCACAGACCTTCAACAGTGCTAAATATTCAGGTTCTGGAAACC
ATGATTTCAAAGGGAATTATCACAACAGCTCATCACAGACTACCTTAACA
AAGAGTGGAAACCCATCTGtaaATAGTGGGAACGATAGTGGTCAGAACAA
TGCCTCCTTCAAAGGGCAAGGGTATAATGATGGTAAAGCCTTCCTTGGCA
CGAGTCCATCATCGCAGCCTGGGATGACTTTGCACGGTCAAAACACTCAT
CTCAACCCGTACTTGTTGGCCCAGCAACAACAGCAGAACAGCCTACTGGC
TGGCCAagtttcagccaatcagattggTCATCAGGGTAGCCATGACAACC
GATCTGGATTCAGTGGTAGTCAACAGAAACGGGAAGGGAAAGGATCATAT
CAATCTTACTGGTCTGGTTCAAGATGATTTCAGCAATTACACGGATATAA
TAATTACGAAGAACTTCTACAATTACAACAACGAGCTGTCCATATGCCTC
AATCACCATACCATTATGATGTTTCAACGATGTATCCAACGCCTACAGCT
ACTGCTACAAGAGAAGGGATCGCTGGTTATCAAGGCGCAGAAACTAAATT
TGCAAGAGCAAGTGGAGATGAGACGACTGGTCTACATCAAGCTAACGCAC
ACGTAGCAGCAGGCAACATAAACGCCCAACATGCCCAAGCCTATATGAAC
GCAGCCGGTCAATTACCGTATGGTTTCACGTATGCTTACCAACCCGGTGT
GATGCCAGGCCAAGCACCAGGCTTGTACCCAGCTTTCACTACACCAAATG
TATATTTGAACCAAGCTGGAGGAGGTAGCAAAGGCGTGGTTGGTACGCAA
TACCAGTCGCAATATACTCCACAGACCTTCAACAGTGCTAAATATTCAGG
TTCTGGAAACCATGATTTCAAAGGGAATTATCACAACAGCTCATCACAGA
CTACCTTAACAAAGAGTGGAAACCCATCTGtaaATAGTGGGAACGATAGT
GGTCAGAACAATGCCTCCTTCAAAGGGCAAGGGTATAATGATGGTAAAGC
CTTCCTTGGCACGAGTCCATCATCGCAGCCTGGGATGACTTTGCACGGTC
AAAACACTCATCTCAACCCGTACTTGTTGGCCCAGCAACAACAGCAGAAC
AGCCTACTGGCTGGCCAagtttcagccaatcagattggTCATCAGGGTAG
CCATGACAACCGATCTGGATTCAGTGGTAGTCAACAGAAACGGGAAGGGA
AAGGATCATATCAATCTTACTGGTCTGGTTCAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030212XLOC_030212Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047443-exon-scaffold_128-1491911889:94721..94790TCONS_00047443-exon-scaffold_128-1491911889:94721..94790Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:94721..94790TCONS_00047443-exon-scaffold_128-1510915933:94721..94790Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:94721..94790TCONS_00047443-exon-scaffold_128-1575043694:94721..94790Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1491911889:97855..97942TCONS_00047443-exon-scaffold_128-1491911889:97855..97942Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:97855..97942TCONS_00047443-exon-scaffold_128-1510915933:97855..97942Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:97855..97942TCONS_00047443-exon-scaffold_128-1575043694:97855..97942Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1491911889:99820..99876TCONS_00047443-exon-scaffold_128-1491911889:99820..99876Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:99820..99876TCONS_00047443-exon-scaffold_128-1510915933:99820..99876Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:99820..99876TCONS_00047443-exon-scaffold_128-1575043694:99820..99876Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1491911889:100613..100633TCONS_00047443-exon-scaffold_128-1491911889:100613..100633Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:100613..100633TCONS_00047443-exon-scaffold_128-1510915933:100613..100633Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:100613..100633TCONS_00047443-exon-scaffold_128-1575043694:100613..100633Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1491911889:102205..102347TCONS_00047443-exon-scaffold_128-1491911889:102205..102347Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:102205..102347TCONS_00047443-exon-scaffold_128-1510915933:102205..102347Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:102205..102347TCONS_00047443-exon-scaffold_128-1575043694:102205..102347Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1491911889:102774..102948TCONS_00047443-exon-scaffold_128-1491911889:102774..102948Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:102774..102948TCONS_00047443-exon-scaffold_128-1510915933:102774..102948Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:102774..102948TCONS_00047443-exon-scaffold_128-1575043694:102774..102948Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1491911889:103456..103508TCONS_00047443-exon-scaffold_128-1491911889:103456..103508Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:103456..103508TCONS_00047443-exon-scaffold_128-1510915933:103456..103508Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:103456..103508TCONS_00047443-exon-scaffold_128-1575043694:103456..103508Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1491911889:103921..104711TCONS_00047443-exon-scaffold_128-1491911889:103921..104711Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1510915933:103921..104711TCONS_00047443-exon-scaffold_128-1510915933:103921..104711Clytia hemisphaericaexon
TCONS_00047443-exon-scaffold_128-1575043694:103921..104711TCONS_00047443-exon-scaffold_128-1575043694:103921..104711Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047443-proteinTCONS_00047443-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:94721..104711 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.4303	22.6915	28.592	38.1766	0	0.201985	8.03589e-06	3.28681e-09	22.3539	15.3239	36.0226	17.7839	43.7604	31.2294	38.1652	35.5299	35.06	21.9862	44.9155	26.6877	13.1253	32.3138	23.3364	15.2594	0	0	13.3029	33.0403	4.24957	6.7065
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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