TCONS_00047481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047481
Unique NameTCONS_00047481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047481 ID=TCONS_00047481|Name=TCONS_00047481|organism=Clytia hemisphaerica|type=transcript|length=2048bp
gtttgcctttcctctcTACCATGAAAAgagaatttagttaaaattcaatt
tttttcagacacagTTAACctccaaactcttatactttttcgtgggtcaa
tCGGTACTTTTGTATTTGACCCCAAGTTTCTTATCTGGTCCCACAGTTTT
TAGTGAGCTTGACCttatttcatttctttgttttagaaaacaaatgaaaa
atcaatAAGATATAACAATATCTAACATAGTTTACAATGACATAAAATCA
AGTTCTTCTAGTTTTGATGCGTTATTGTTGTGTGTATTTAAACTTCTATT
GATGAGTGTCACATCATTATTAACAACGGCTGCGACAACCTCCAAAAACA
GCTCTGTGGCAAAAATTGCTACACATGAAAGCAATGGAGTGGATGATGGT
AAAAATTCTCCCCTGATCAAGAAACTACATAATCCTTCACAGCTTCAACA
AAAACTTGCAAAGCAACTTCAGAAGTCAAGGCAAACCAAAGCATACTCTT
CCAAAGATCTGTACACTGGGAAGAAGAACTTTTCAACTGAAGAGCAAACT
CCTTTAGTTTCAATAGAAAACAGCGATGAAGATGAATTCGATTACATCAG
TTTGAAGACAGAAGCAGAAACGGACGATGAAGTCGTTCTCTTCAAACAAC
CCAGATCTGCTGCTACTAAATACAGGttttcaacaTCTGACGATTGCAAG
GAACACCTTCTAAGAGATGGCTTTAGACTGGACGAATTATCTGATGACGA
AGATCTAGACTTGATTCCACCGAAAGCTGATAATGCAACATGGTGGTCTT
GTGaaggaatgacgtcatcatgttCCATTCAATAACAATGGattcgcgac
ggtatgctattgaagcgcgcgcaagtaaAGACCGGTCTTTATACAACAAC
AAGGAAATATTTTAGCACTTTTTAGATAACAGATCCTACATTGCACTCGC
GTCATTTTAACTATCATATACTGTAGTTCAGTGagcttttattttctttt
gactCTCGAATTGCAGGTAACAAAtttaaaaagggcaaaaaaatatcaga
agGCCCTACTAGCAATTGGCAACAAGGGNTAACAAAtttaaaaagggcaa
aaaaatatcagaagGCCCTACTAGCAATTGGCAACAagggaaaaataatt
attttttattgaaaaacttttcccAATATCCATAATTTcttaatatttct
tttgattgaattttaccaattttgtcaatttgattgaaaataatttcttt
tgtaaataaTGGACATATTGTAGgcatttttgttattttctctcttatta
ttattataagtaAACTCCAACTTTTTGTTTTACAATTCTTTTTTTACTAG
TTACTgttgacaaaaaaatcacataTTCAATCCTCGAGttaTCTTCTGTT
AATTTATGATTATtagttttgcatttttttttcattttgaatttttctac
agttcatttcttgaaattttgagcaGATTTTTTAGACCAATGCATTTTTT
ATTTGGCGATATATAATTAGTAATAATTACTTTACACAACAATCATTAAA
AGTGCTTGCCGAATAATTTTGATattaacctcgaacttttaaaATCTCGT
GTAAAGGATTTTAGTGCCTGCAAGATAACTTCATAGTGTATTTTTTTTCG
TgtatagtttttatttttcacttttttcttaaagAATTTTCCCAGAATTT
CCCCTTTGtagtttaattttaaaaaacgattttaatttatttgttaTAGC
ACCTAAATTTGGTAGTTGTTCTCAGATCTCTTCTGTCTTAACCTCCTTGA
TACTACTCGACTAGCCTTTGGTACATTGTTCATATCACTGTCACAACCCT
CACCTATTGCATTATCATGGCATTATGTAGACTGAAATCTGCCCCGTTAA
ATTCTTATTAGAAGGAGTGATTGAAACTAAACTTCTATGACGAGCtccat
caaaacaaagtttcaaTACTTCAATACAAATGTTCTAAAAAATTGGCAAT
CTGCACGTTTGAGACATTGCTTTTGAAGGGGAAAAGATATGATTAAAA
Run BLAST on NCBI

protein sequence of TCONS_00047481-protein

>TCONS_00047481-protein ID=TCONS_00047481-protein|Name=TCONS_00047481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
MSVTSLLTTAATTSKNSSVAKIATHESNGVDDGKNSPLIKKLHNPSQLQQ
KLAKQLQKSRQTKAYSSKDLYTGKKNFSTEEQTPLVSIENSDEDEFDYIS
LKTEAETDDEVVLFKQPRSAATKYRFSTSDDCKEHLLRDGFRLDELSDDE
DLDLIPPKADNATWWSCEGMTSSCSIQ
Run BLAST on NCBI

transcript from alignment at scaffold_13:120341..128796+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047481 ID=TCONS_00047481|Name=TCONS_00047481|organism=Clytia hemisphaerica|type=transcript|length=8456bp|location=Sequence derived from alignment at scaffold_13:120341..128796+ (Clytia hemisphaerica)
gtttgcctttcctctcTACCATGAAAAgagaatttagttaaaattcaatt
tttttcagacacagTTAACctccaaactcttatactttttcgtgggtcaa
tCGGTACTTTTGTATTTGACCCCAAGTTTCTTATCTGGTCCCACAGTTTT
TAGTGAGCTTGACCttatttcatttctttgttttagaaaacaaatgaaaa
atcaatAAGATATAACAATATCTAACATAGTTTACAATGACATAAAATCA
AGTTCTTCTAGTTTTGATGCGTTATTGTTGTGTGTATTTAAACTTCTATT
GATGAGTGTCACATCATTATTAACAACGGCTGCGACAACCTCCAAAAACA
GCTCTGTGGCAAAAATTGCTACACATGAAAGCAATGGAGTGGTAAGTTCT
TCATCTGTTAATTCATTTTTTCTCCCAAATTTTCAGCCCATTAAAGACAT
TTCTGTAATTCTTGCAAATTCTGTAAAACAATCTGAAAAGGTAATTCACA
ACAGTtcgcaattaaaaaaaaattcttataagcAGAGTGTCGTTTAGATG
AAAATACATTAACTCTTACTTTATCAATATACAATTATAttagaaagaaa
atgtttaaaaatttaaGGTGTGGTTGTGTTTAtgctaaaaagaaatttta
tctcTTTCAAAGGATGATGGTAAAAATTCTCCCCTGATCAAGAAACTACA
TAATCCTTCACAGCTTCAACAAAAACTTGGTAAGCAGTTTTCTTTCAATC
AATGTTCGAACTTCTTCCAATTCAGATGGATTTCCGCCTCTGAGACTTGT
ATGTTTTTTCTAACTTAAAATTGTAACCTTGGCCCTTCCTTGTAGTGGAA
AAGGATCCTATCTAGAAAAGGAAAGGGCCAATCTCTAAATTTTAAGATAT
AGCAAAGTAAAGAAAGATTAGTTTTCTCAGACACTTAATTTGAGATTGTG
AATGAAGAACTAATGGGTTAAATTTATCGTTTAAGTTGTTGATTTTAAAT
TACTTTTCTCACATTTATTCAGCAAAGCAACTTCAGAAGTCAAGGCAAAC
CAAAGCATACTCTTCCAAAGATCTGTAAGTAAATTTGCTTTCTTCATGCC
TTTGGTCTGACAAATGTCGTAAAAGTTTGTACTGATTTTCTCTCATCTTT
CTACATTGATTTTTCTCAATATTGAAGCAAACATTTTGAGAAGAGCGTTG
ATAAAAGTATAAGAAATAGAGTATGAAAATTCTGAATTCAAATCTTAATT
TGATGCTAAAAACACAAGAGAATGGCTCATGACTTACCTTGTAAGTCTTG
ATGCCCttcagtgtgtcccaaaaaagggaacaaatttttgtataaagtaA
GATCCTCATGATTTATGGGGACTTGTATACTTAATATTTCGATCTCATAG
ACCTATTCAATTATCTTGTGAATTGAAATTCTATCGAACTGAAAAGAGAA
TTTTAATCTCATTTAAATCATTCTAAGCCAAATTAAGATATgagttttac
tttttataaaaatttgtctGATTTTTTCGGAACACACTGTACATAGCTTG
AACGTTGAGAACAGAAATAATTGTTTCTGTATTTCAGGTACACTGGGAAG
AAGAACTTTTCAACTGAAGAGCAAACTCCTTTAGTTTCAATAGAAAACAG
GTTTATCTTTaaatatattcttaatttttcgttcTCCAAAGAAAAGTTAG
AACCTTCTATAGGATACAAAATTAGTTCACCTTTAGCTTTTACACAGTGT
TCACGGTTTCAATCTAAGACGGATTTCTCccaaaatataaataaagaCTT
TTCCACATTTGAAGTTTAGAAAAATCTAgtattaaaatattgaaaatctg
tGCAAATTTGTCGTTTGTCAAGTTCAGTCTATTTTCCATTTGATATGAAA
AAACTTTGCTTTAACACTGTTTACAGGGATTGGATATTAACCTTCCTTAA
GGAAACTGATTTTTGGGAagtagaaaaaattgtaaaaaaaaattgccaag
aatttattttggcgtgTAACgtaacttttgaattttggcTATAACTAATT
TTGAGGAATGGTAGGGTAaatcaaaattcgaaaattacaaaaaaagttaa
ctacattttattttaatttataaatATTTATAAATTCGGAATGTCTTCCT
TCGCCCCAATTAAGAAAATGTTTGCCACcctcgattttttattttcttta
tttgggATCGAGATGCAAACAAGCCTGCATGACTTGCAGTAATCCTAGGT
CCAGTGACCGTAGcataaaggtagagcatccagctacggtgcgcaaggtt
gtgggttcgatccccagctgggtcataccaaagattcccaaaatggtact
tgatgcctctctgcttgatgctcagcaactaaagagacggatcaagtgta
agtggagaaatccagggaaaggagtggcgccctcccctaccttcgggtag
acaactatacgaaaagggagccttcgggtcgccctcgactgcagTCGCAA
ACGTACTACGTACGAATCCTAGGTCCAGTCCTATGATCGTATTTAGCTTT
CACGCTTCAAACACATACTGCTAAAAATAATgattgattttttataaaac
ttttcaGCGACGAAGATGAAATAatgattgatttttgaaaacttttcagT
GATGAAGatgaaataataattgatttttgaaaacttttcagCGATGAAGA
TGAATTCGATTACATCAGTTTGAAGACAGAAGCAGAAACGGACGATGAAG
TCGTTCTCTTCAAACAACCCAGATCTGCTGCTACTAAATACAGGGTATAT
ACAAAATACTAATAGGGTCTGTAGATACAGGGTAAACAGTCTCGACTGTg
gtcgagcaatgatgatgaCAGGTTATTCTATATTCTATTTTACATGAATT
TGATATAATGAAACTATGAATGACCAACTTTGTAAATCTTTAGTATTTAA
CAAAGTCTTTCTTAGATTGCTCTACTCTTTACTTTGTACAACACTTGATA
TTTATCAGCCAAATTTAAATTGAACCTTTTCAGTTGAGCTGGATGTAAGC
AAAGAAAACCATGTAAACAAAGTCTGTttcctttttttagttttcaacaT
CTGACGATTGCAAGGAACACCTTCTAAGAGATGGCTTTAGGTTGGTATCA
TGATGATTTGTATTCAAGCTTCAActaaataaaatttataataaAGTCTC
TACTTTCGGACACTTTCAGGTATGACGGAAAGGGATGAGTAGTTAGTTTG
AGATTTTCTTTCTGTAGATAcctgatacacgttttttataagaacatcca
aatttttcaagcctttggatgttcttaactttttgagtttcaagccttaa
attgttcttaacatgttcttgtttttcccatttttttatgtaccgggtga
cccacgaaaaagtataagagtttggagggtaactgtgtctgaaaaaaatt
gaattttaactaaattattttttcatggtaaagaggaaaggcaatcctaa
attttgatgtatcattttttaattttggaaaagtagttatcaagatatgg
aggtataaagtcaaaagtcattataaaaaacagtcaaaaaacgtCATAAA
AGACAGcatcaaattaattaattaacaaataaaaagaGACATCGAGTGAG
AAacatattttgatttcttttaccgGAAGGATTCAGAAAAGAATAACAAA
GGTTGacaattcttttttaatcatatttattcatttggaaaagtactctc
gggtacctaatagccgtccccccgctaattaatttttcgaaaattttcca
cccagaacattcttattccaacccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNtagttaaaattcaatttttttcggac
acatttaccctccaaactcttatactttttcgtgggtcacccggtattct
TGTCTATTTgcctaagaaattggctgttttcgagtccgcaaagccttaaa
atgttcttaacttactcttaacatttttgccatcgaagacttctgttctt
acatagtttgttcttataaaaataggTGTATAGTCCTGAATAAAACCTTT
GAATCTTATAACCTGTTACAAAGTTGAGTTATCTCAATTTTAATTTCTCG
CTATTTTCTTTCTAAAAGGGTTTAACTTATAGCTTGAATTTCTTAGCTTA
GAAAAAATGTTaagcaaaaagattttatcaagGACCATTAATACGTTCAC
TGCCgagccttttttagaaattggaAATTTGACCTTATTTAAAGCTTGAC
TTTAGTGATGGCTTCAATGATCTCATTTTTGCTTCAAATACCTTCAGATT
GTAAACCAAACAACGCAAAACTTTGTTTATCCTGAATATgcaaaaataag
tttttctATATAAGAAATTGAGGAAGGCCCTTTGAAGTACTGTAGGTATT
TTGACCCGTATactacgagtatactcgtagtCAGCAGTGAACGTGTTAAA
GGGATTTACAGGTTGAACATCCATCAAACCATCTGACTACCTCTTTAAAT
TTAGGATATCAAGTCTCTCTTGTTTAATCACCTTTACGACTCTTCATATC
TTTTTTTTCGATTATATACCAAAACGCATTTGTGttaacaaaatatttat
ttttcttatttgattAGACTGGACGAATTATCTGATGACGAAGATCTAGA
CTTGATTCCACCGAAAGCTGATAATGCAACATGGTGGTCTTGTGaaggaa
tgacgtcatcatgttCCATTCAATAACAATGGGTATCGTCAATGCTTTTT
TTCTTatacaaatacttttttatacGATGCAAGAAATATCCATGTAGTCG
TTAATGTCGGAGCCTTGTATGTTTTAAATCAAGGTTTTCATCAAAGGGGA
AatggaaaatattaaaaagagTTTCCAAATTTGTTAACCTTCGATAATGT
TTACAAGAGATTTTACTGCAGTAGGGGGGACTTTCGTAAGGTCAATCATA
AggtgttttgttttaaataggTTTATTCTCGGCTACTTTATAGACACTCT
GTTTGAGTTTCAAAGGTTAGATTTGCAGATATTAAGCTTTCCtgtaaaaa
tatctttcaaaaagcatGACACTGTAAGGTTAACGGCTTTGGGAACTCTT
TTTAAGCTTGTGTGACAATGCATTCACAATCAAAAGAGTAGGTAGattta
tataatatatttttaaaaagagtaaTTGATACTTTTTTGTTACTAGAATA
ATGCAGTGTTAAGGCCGCTCTCCACTTGCGCgtgctgcgatcgcactttt
tggctttaatccattttgcttggaaaaaagattacgtcttaaaaatgtag
cgcgcgctttaaacttttttcaaacgttacgtcagatcgcgccaatggag
ttgcttcatttttctttgacCAATAGCATGGAAGCTtcgctcgaaaaagt
gcgattgaagcgcgcgcaagtggcgACCGGCCTTTATACAACAACAAGGA
AATATTTTAGCACTTTTTAGATAACAGATCCTACATTGCACTCGCATCAT
TTTAACTATCATATACTGTAGTTCAGTGagcttttattttcttttgactC
TCGAATTGAAggtaacaattttaaaaagggcaaaaaaatatcagaagGCC
CTACTAGCAATTGGCAACaaggaaaaaataattattttttattgaaaaac
ttttcccAATATCCATAATTTcttaatatttcttttgattgaattttacc
aattttgtcaatttgattgaaaataaatttttttgtaaataatggACATT
TTGTAGgcatttttgttattttctctcttattattattataagtaAACTC
CAACTTTTTGTTTTACAATTCTTTTTTTACTAGTTACTGttgacaaaaaa
ataacatattCAATCCTTGAGTTATAGGCCAGCGTCCGAGGTTcagaaag
ttaacaaaccataccatttttggatactactaattcagggctatccagcc
gtgggaatgattttttctgaaaatgctcctagGAAANCTAGACTTGATTC
CACCGAAAGCTGATAATGCAACATGGTGGTCTTGTGaaggaatgacgtca
tcatgttCCATTCAATAACAATGGGTATTGTCAATACTTTTTTCTTATGC
AAGTACTTTTTTATACGATGCAAGAAATATCCATATAGTCGTTAATGTCG
GAGCCTTGTATGTTTTAAATCAAGGTTTTCATAGGGAAATGAAAGATAtt
aaaaagaatttccaaaTTTGTTAAcctttgataatgtttacaagaaactt
TACTGCAGTAGATGGGACTTTCATAAGGTCAATCGTAAGGTGTTTAGTTT
TAAATAGGTTCATTCTCGGCTACCTTAGAGGCACTCTGTTTGAGTGTTTG
AGTTTCAAAGGTTAGACTTGCAGCTGTCTCCtgtaaaaatatctttcaaa
aagcatGATACTGTAAGGTCAACAGCTTTGTGAACTTTTTTTAAGCTTGT
GTGACAATACATACACAATGGAAAGAGTAGGTAGatttatataatatatt
ttttacaaagagTAATTGATAGTTTTTTGTTACTAGAATAATGCAgtgtt
aaggccggtctccacttgcacgcgctgcgatcgcactttttggctttgat
tctttttgcttggaaaaaagattacgtcataaaaatgtaacacatttcaa
ctttttccaaacgtcatgattattacttctctcatttgaccgaaattcaa
tcccacaatccttttcgtcttaattcaaaagtcgtgaaagttattacttt
ttctttgtaatcgagtgtaatttgcgtgcaagcgtaataaacgcaaaggt
tgatggaattgaatttcagtcaaacataaaaatcaatgtctatttttaga
ttcgcgacggtatgctattgaagcgcgcgcaagtaaAGACCGGTCTTTAT
ACAACAACAAGGAAATATTTTAGCACTTTTTAGATAACAGATCCTACATT
GCACTCGCGTCATTTTAACTATCATATACTGTAGTTCAGTGagcttttat
tttcttttgactCTCGAATTGCAGGTAACAAAtttaaaaagggcaaaaaa
atatcagaagGCCCTACTAGCAATTGGCAACAAGGGNTAACAAAtttaaa
aagggcaaaaaaatatcagaagGCCCTACTAGCAATTGGCAACAagggaa
aaataattattttttattgaaaaacttttcccAATATCCATAATTTctta
atatttcttttgattgaattttaccaattttgtcaatttgattgaaaata
atttcttttgtaaataaTGGACATATTGTAGgcatttttgttattttctc
tcttattattattataagtaAACTCCAACTTTTTGTTTTACAATTCTTTT
TTTACTAGTTACTgttgacaaaaaaatcacataTTCAATCCTCGAGttaT
CTTCTGTTAATTTATGATTATtagttttgcatttttttttcattttgaat
ttttctacagttcatttcttgaaattttgagcaGATTTTTTAGACCAATG
CATTTTTTATTTGGCGATATATAATTAGTAATAATTACTTTACACAACAA
TCATTAAAAGTGCTTGCCGAATAATTTTGATattaacctcgaacttttaa
aATCTCGTGTAAAGGATTTTAGTGCCTGCAAGATAACTTCATAGTGTATT
TTTTTTCGTgtatagtttttatttttcacttttttcttaaagAATTTTCC
CAGAATTTCCCCTTTGtagtttaattttaaaaaacgattttaatttattt
gttaTAGCACCTAAATTTGGTAGTTGTTCTCAGATCTCTTCTGTCTTAAC
CTCCTTGATACTACTCGACTAGCCTTTGGTACATTGTTCATATCACTGTC
ACAACCCTCACCTATTGCATTATCATGGCATTATGTAGACTGAAATCTGC
CCCGTTAAATTCTTATTAGAAGGAGTGATTGAAACTAAACTTCTATGACG
AGCtccatcaaaacaaagtttcaaTACTTCAATACAAATGTTCTAAAAAA
TTGGCAATCTGCACGTTTGAGACATTGCTTTTGAAGGGGAAAAGATATGA
TTAAAA

Coding sequence (CDS) from alignment at scaffold_13:120341..128796+

>TCONS_00047481 ID=TCONS_00047481|Name=TCONS_00047481|organism=Clytia hemisphaerica|type=CDS|length=3738bp|location=Sequence derived from alignment at scaffold_13:120341..128796+ (Clytia hemisphaerica)
ATGAGTGTCACATCATTATTAACAACGGCTGCGACAACCTCCAAAAACAG
CTCTGTGGCAAAAATTGCTACACATGAAAGCAATGGAGTGGATGATGGTA
AAAATTCTCCCCTGATCAAGAAACTACATAATCCTTCACAGCTTCAACAA
AAACTTGCAAAGCAACTTCAGAAGTCAAGGCAAACCAAAGCATACTCTTC
CAAAGATCTGTACACTGGGAAGAAGAACTTTTCAACTGAAGAGCAAACTC
CTTTAGTTTCAATAGAAAACAGCGATGAAGATGAATTCGATTACATCAGT
TTGAAGACAGAAGCAGAAACGGACGATGAAGTCGTTCTCTTCAAACAACC
CAGATCTGCTGCTACTAAATACAGGttttcaacaTCTGACGATTGCAAGG
AACACCTTCTAAGAGATGGCTTTAGACTGGACGAATTATCTGATGACGAA
GATCTAGACTTGATTCCACCGAAAGCTGATAATGCAACATGGTGGTCTTG
TGaaggaatgacgtcatcatgttCCATTCAATAAATGAGTGTCACATCAT
TATTAACAACGGCTGCGACAACCTCCAAAAACAGCTCTGTGGCAAAAATT
GCTACACATGAAAGCAATGGAGTGGATGATGGTAAAAATTCTCCCCTGAT
CAAGAAACTACATAATCCTTCACAGCTTCAACAAAAACTTGCAAAGCAAC
TTCAGAAGTCAAGGCAAACCAAAGCATACTCTTCCAAAGATCTGTACACT
GGGAAGAAGAACTTTTCAACTGAAGAGCAAACTCCTTTAGTTTCAATAGA
AAACAGCGATGAAGATGAATTCGATTACATCAGTTTGAAGACAGAAGCAG
AAACGGACGATGAAGTCGTTCTCTTCAAACAACCCAGATCTGCTGCTACT
AAATACAGGttttcaacaTCTGACGATTGCAAGGAACACCTTCTAAGAGA
TGGCTTTAGACTGGACGAATTATCTGATGACGAAGATCTAGACTTGATTC
CACCGAAAGCTGATAATGCAACATGGTGGTCTTGTGaaggaatgacgtca
tcatgttCCATTCAATAAATGAGTGTCACATCATTATTAACAACGGCTGC
GACAACCTCCAAAAACAGCTCTGTGGCAAAAATTGCTACACATGAAAGCA
ATGGAGTGGATGATGGTAAAAATTCTCCCCTGATCAAGAAACTACATAAT
CCTTCACAGCTTCAACAAAAACTTGCAAAGCAACTTCAGAAGTCAAGGCA
AACCAAAGCATACTCTTCCAAAGATCTGTACACTGGGAAGAAGAACTTTT
CAACTGAAGAGCAAACTCCTTTAGTTTCAATAGAAAACAGCGATGAAGAT
GAATTCGATTACATCAGTTTGAAGACAGAAGCAGAAACGGACGATGAAGT
CGTTCTCTTCAAACAACCCAGATCTGCTGCTACTAAATACAGGttttcaa
caTCTGACGATTGCAAGGAACACCTTCTAAGAGATGGCTTTAGACTGGAC
GAATTATCTGATGACGAAGATCTAGACTTGATTCCACCGAAAGCTGATAA
TGCAACATGGTGGTCTTGTGaaggaatgacgtcatcatgttCCATTCAAT
AAATGAGTGTCACATCATTATTAACAACGGCTGCGACAACCTCCAAAAAC
AGCTCTGTGGCAAAAATTGCTACACATGAAAGCAATGGAGTGGATGATGG
TAAAAATTCTCCCCTGATCAAGAAACTACATAATCCTTCACAGCTTCAAC
AAAAACTTGCAAAGCAACTTCAGAAGTCAAGGCAAACCAAAGCATACTCT
TCCAAAGATCTGTACACTGGGAAGAAGAACTTTTCAACTGAAGAGCAAAC
TCCTTTAGTTTCAATAGAAAACAGCGATGAAGATGAATTCGATTACATCA
GTTTGAAGACAGAAGCAGAAACGGACGATGAAGTCGTTCTCTTCAAACAA
CCCAGATCTGCTGCTACTAAATACAGGttttcaacaTCTGACGATTGCAA
GGAACACCTTCTAAGAGATGGCTTTAGACTGGACGAATTATCTGATGACG
AAGATCTAGACTTGATTCCACCGAAAGCTGATAATGCAACATGGTGGTCT
TGTGaaggaatgacgtcatcatgttCCATTCAATAAATGAGTGTCACATC
ATTATTAACAACGGCTGCGACAACCTCCAAAAACAGCTCTGTGGCAAAAA
TTGCTACACATGAAAGCAATGGAGTGGATGATGGTAAAAATTCTCCCCTG
ATCAAGAAACTACATAATCCTTCACAGCTTCAACAAAAACTTGCAAAGCA
ACTTCAGAAGTCAAGGCAAACCAAAGCATACTCTTCCAAAGATCTGTACA
CTGGGAAGAAGAACTTTTCAACTGAAGAGCAAACTCCTTTAGTTTCAATA
GAAAACAGCGATGAAGATGAATTCGATTACATCAGTTTGAAGACAGAAGC
AGAAACGGACGATGAAGTCGTTCTCTTCAAACAACCCAGATCTGCTGCTA
CTAAATACAGGttttcaacaTCTGACGATTGCAAGGAACACCTTCTAAGA
GATGGCTTTAGACTGGACGAATTATCTGATGACGAAGATCTAGACTTGAT
TCCACCGAAAGCTGATAATGCAACATGGTGGTCTTGTGaaggaatgacgt
catcatgttCCATTCAATAAATGAGTGTCACATCATTATTAACAACGGCT
GCGACAACCTCCAAAAACAGCTCTGTGGCAAAAATTGCTACACATGAAAG
CAATGGAGTGGATGATGGTAAAAATTCTCCCCTGATCAAGAAACTACATA
ATCCTTCACAGCTTCAACAAAAACTTGCAAAGCAACTTCAGAAGTCAAGG
CAAACCAAAGCATACTCTTCCAAAGATCTGTACACTGGGAAGAAGAACTT
TTCAACTGAAGAGCAAACTCCTTTAGTTTCAATAGAAAACAGCGATGAAG
ATGAATTCGATTACATCAGTTTGAAGACAGAAGCAGAAACGGACGATGAA
GTCGTTCTCTTCAAACAACCCAGATCTGCTGCTACTAAATACAGGttttc
aacaTCTGACGATTGCAAGGAACACCTTCTAAGAGATGGCTTTAGACTGG
ACGAATTATCTGATGACGAAGATCTAGACTTGATTCCACCGAAAGCTGAT
AATGCAACATGGTGGTCTTGTGaaggaatgacgtcatcatgttCCATTCA
ATAAATGAGTGTCACATCATTATTAACAACGGCTGCGACAACCTCCAAAA
ACAGCTCTGTGGCAAAAATTGCTACACATGAAAGCAATGGAGTGGATGAT
GGTAAAAATTCTCCCCTGATCAAGAAACTACATAATCCTTCACAGCTTCA
ACAAAAACTTGCAAAGCAACTTCAGAAGTCAAGGCAAACCAAAGCATACT
CTTCCAAAGATCTGTACACTGGGAAGAAGAACTTTTCAACTGAAGAGCAA
ACTCCTTTAGTTTCAATAGAAAACAGCGATGAAGATGAATTCGATTACAT
CAGTTTGAAGACAGAAGCAGAAACGGACGATGAAGTCGTTCTCTTCAAAC
AACCCAGATCTGCTGCTACTAAATACAGGttttcaacaTCTGACGATTGC
AAGGAACACCTTCTAAGAGATGGCTTTAGACTGGACGAATTATCTGATGA
CGAAGATCTAGACTTGATTCCACCGAAAGCTGATAATGCAACATGGTGGT
CTTGTGaaggaatgacgtcatcatgttCCATTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030244XLOC_030244Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047481-proteinTCONS_00047481-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047481-exon-scaffold_13-1491911889:120341..120731TCONS_00047481-exon-scaffold_13-1491911889:120341..120731Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:120341..120731TCONS_00047481-exon-scaffold_13-1510915933:120341..120731Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:120341..120731TCONS_00047481-exon-scaffold_13-1575043694:120341..120731Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1491911889:121003..121069TCONS_00047481-exon-scaffold_13-1491911889:121003..121069Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:121003..121069TCONS_00047481-exon-scaffold_13-1510915933:121003..121069Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:121003..121069TCONS_00047481-exon-scaffold_13-1575043694:121003..121069Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1491911889:121363..121414TCONS_00047481-exon-scaffold_13-1491911889:121363..121414Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:121363..121414TCONS_00047481-exon-scaffold_13-1510915933:121363..121414Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:121363..121414TCONS_00047481-exon-scaffold_13-1575043694:121363..121414Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1491911889:121928..121990TCONS_00047481-exon-scaffold_13-1491911889:121928..121990Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:121928..121990TCONS_00047481-exon-scaffold_13-1510915933:121928..121990Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:121928..121990TCONS_00047481-exon-scaffold_13-1575043694:121928..121990Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1491911889:123032..123134TCONS_00047481-exon-scaffold_13-1491911889:123032..123134Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:123032..123134TCONS_00047481-exon-scaffold_13-1510915933:123032..123134Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:123032..123134TCONS_00047481-exon-scaffold_13-1575043694:123032..123134Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1491911889:123431..123480TCONS_00047481-exon-scaffold_13-1491911889:123431..123480Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:123431..123480TCONS_00047481-exon-scaffold_13-1510915933:123431..123480Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:123431..123480TCONS_00047481-exon-scaffold_13-1575043694:123431..123480Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1491911889:125358..125472TCONS_00047481-exon-scaffold_13-1491911889:125358..125472Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:125358..125472TCONS_00047481-exon-scaffold_13-1510915933:125358..125472Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:125358..125472TCONS_00047481-exon-scaffold_13-1575043694:125358..125472Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1491911889:127590..128796TCONS_00047481-exon-scaffold_13-1491911889:127590..128796Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1510915933:127590..128796TCONS_00047481-exon-scaffold_13-1510915933:127590..128796Clytia hemisphaericaexon
TCONS_00047481-exon-scaffold_13-1575043694:127590..128796TCONS_00047481-exon-scaffold_13-1575043694:127590..128796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:120341..128796 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.46247	5.45777	21.5216	24.2967	5.90782	3.50607	4.89901	5.13206	9.29229	10.6759	6.16681	6.46926	4.5676	4.81968	5.96811	5.22244	9.15966	7.70892	3.98139	7.4068	3.65963	3.575	4.56689	5.45809	3.89308	4.60313	6.00028	3.39036	4.20272	3.65254
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029339FAM219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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