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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047490 ID=TCONS_00047490|Name=TCONS_00047490|organism=Clytia hemisphaerica|type=transcript|length=4165bpRun BLAST on NCBI protein sequence of TCONS_00047490-protein >TCONS_00047490-protein ID=TCONS_00047490-protein|Name=TCONS_00047490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp MEEFLKDQYNNTQKKQQPAQQQKQAERPAESVEADIKIHMPDRTLLTIKIRun BLAST on NCBI transcript from alignment at scaffold_13:151154..165543- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047490 ID=TCONS_00047490|Name=TCONS_00047490|organism=Clytia hemisphaerica|type=transcript|length=14390bp|location=Sequence derived from alignment at scaffold_13:151154..165543- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_13:151154..165543- >TCONS_00047490 ID=TCONS_00047490|Name=TCONS_00047490|organism=Clytia hemisphaerica|type=CDS|length=9870bp|location=Sequence derived from alignment at scaffold_13:151154..165543- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047490 vs. Swiss-Prot (Human)
Match: SNX27 (Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=2) HSP 1 Score: 310.071 bits (793), Expect = 4.480e-92 Identity = 144/338 (42.60%), Postives = 220/338 (65.09%), Query Frame = 3
Query: 6 LKRQFHDFPFPKFPGKWPLKLSEVQLDARRRHLETYLEEVCAVRAIGESSPMEEFLKDQYNNTXXXXXXXXXXXXXERPAESVEADIKIHMPDRTLLTIKISKKQRYAKIYEALVKKLGLSDFSATFFAIFEIMDKGFTRKLESNEFPYTLFNKKYQES--GTSCLVLQKWVFSIEKEIEMYEDSVAVSLLYHLAVEDIRQGRVKPGDKIQQVKELKASNNKVKFLEVVRTLEGYCQIIFPHCQCDARRDGHVILAISLRHLALKACSTDGVLENIDHTFEWNEIKSWDADDEGMCFWFEYHKAGKKPKQVKVFSPHYKYMTSCTKRIQKELEWCKKD 1013
LKR+F +F FP+ PGKWP LSE QLDARRR LE YLE+VC++R IGES M+EFL + N + ++++ +PD T +T+++ K ++Y+A+ K+G+ + +FA+FE++ F RKL NEFP+ L+ + Y + GT CL ++KW+F+ E+EI + ++ +AV+ +H AV+D+++G +K +K Q+++L V +L ++RT EGY +IIFPHC CD+RR GHVI AIS+ H L AC+ +G LEN FEW+E++ WD D+EGM F FEY + KKP+ VK+F+P++ YM C +R+ EL+W K++
Sbjct: 207 LKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVS----------------DVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGT-CLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEN 527 The following BLAST results are available for this feature:
BLAST of TCONS_00047490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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